5TC1 - Sequence, Chains, Asymmetric and Biological Units

• Title: IN SITU STRUCTURES OF THE GENOME AND GENOME-DELIVERY APPARAT SSRNA BACTERIOPHAGE MS2
• Keywords: ASYMMETRIC CRYOEM RECONSTRUCTION, SSRNA GENOME STRUCTURE, GE DELIVERY APPARATUS, GENOME-CAPSID INTERACTIONS, VIRAL PROTE COMPLEX
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5TC1	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CAPSID PROTEIN	A	129	965	0
2	Protein	CAPSID PROTEIN	B	129	965	0
3	Protein	CAPSID PROTEIN	C	129	965	0
4	Protein	CAPSID PROTEIN	D	129	965	0
5	Protein	CAPSID PROTEIN	E	129	965	0
6	Protein	CAPSID PROTEIN	F	129	965	0
7	Protein	CAPSID PROTEIN	G	119	898	0
8	Protein	CAPSID PROTEIN	H	129	965	0
9	Protein	MATURATION PROTEIN	M	330	2608	0
10	RNA		R	242	5132	0
total				1594	15393	0

Proteins

Unit 1	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 2	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 3	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 4	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 5	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 6	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 7	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 8	ALA 1 SER 2 ASN 3 PHE 4 THR 5 GLN 6 PHE 7 VAL 8 LEU 9 VAL 10 ASP 11 ASN 12 GLY 13 GLY 14 THR 15 GLY 16 ASP 17 VAL 18 THR 19 VAL 20 ALA 21 PRO 22 SER 23 ASN 24 PHE 25 ALA 26 ASN 27 GLY 28 VAL 29 ALA 30 GLU 31 TRP 32 ILE 33 SER 34 SER 35 ASN 36 SER 37 ARG 38 SER 39 GLN 40 ALA 41 TYR 42 LYS 43 VAL 44 THR 45 CYS 46 SER 47 VAL 48 ARG 49 GLN 50 SER 51 SER 52 ALA 53 GLN 54 ASN 55 ARG 56 LYS 57 TYR 58 THR 59 ILE 60 LYS 61 VAL 62 GLU 63 VAL 64 PRO 65 LYS 66 VAL 67 ALA 68 THR 69 GLN 70 THR 71 VAL 72 GLY 73 GLY 74 VAL 75 GLU 76 LEU 77 PRO 78 VAL 79 ALA 80 ALA 81 TRP 82 ARG 83 SER 84 TYR 85 LEU 86 ASN 87 MET 88 GLU 89 LEU 90 THR 91 ILE 92 PRO 93 ILE 94 PHE 95 ALA 96 THR 97 ASN 98 SER 99 ASP 100 CYS 101 GLU 102 LEU 103 ILE 104 VAL 105 LYS 106 ALA 107 MET 108 GLN 109 GLY 110 LEU 111 LEU 112 LYS 113 ASP 114 GLY 115 ASN 116 PRO 117 ILE 118 PRO 119 SER 120 ALA 121 ILE 122 ALA 123 ALA 124 ASN 125 SER 126 GLY 127 ILE 128 TYR 129
Unit 9	MET 1 ARG 2 ALA 3 PHE 4 SER 5 THR 6 LEU 7 ASP 8 ARG 9 GLU 10 ASN 11 GLU 12 THR 13 PHE 14 VAL 15 TYR 35 ARG 36 SER 37 ASN 38 TRP 39 THR 40 PRO 41 GLY 42 ARG 43 PHE 44 ASN 45 SER 46 THR 47 GLY 48 ALA 49 LYS 50 THR 51 LYS 52 GLN 53 TRP 54 HIS 55 TYR 56 PRO 57 SER 58 PRO 59 TYR 60 SER 61 ARG 62 GLY 63 ALA 64 LEU 65 SER 66 VAL 67 THR 68 SER 69 ILE 70 PHE 94 SER 95 LEU 96 ASP 97 ALA 98 ARG 99 SER 100 CYS 101 TYR 102 SER 103 LEU 104 PHE 105 PRO 106 VAL 107 SER 108 GLN 109 ASN 110 LEU 111 THR 112 TYR 113 ILE 114 GLU 115 VAL 116 PRO 117 GLN 118 ASN 119 VAL 120 ALA 121 ASN 122 ARG 123 ALA 124 SER 125 THR 126 GLU 127 VAL 128 LEU 129 GLN 130 LYS 131 VAL 132 THR 133 GLN 134 GLY 135 ASN 136 PHE 137 ASN 138 LEU 139 GLY 140 VAL 141 ALA 142 LEU 143 ALA 144 GLU 145 ALA 146 ARG 147 SER 148 THR 149 ALA 150 SER 151 GLN 152 LEU 153 ALA 154 THR 155 GLN 156 THR 157 ILE 158 ALA 159 LEU 160 VAL 161 LYS 162 ALA 163 TYR 164 THR 165 ALA 166 ALA 167 ARG 168 ARG 169 GLY 170 ASN 171 TRP 172 ARG 173 GLN 174 ALA 175 LEU 176 ARG 177 TYR 178 LEU 179 ALA 180 LEU 181 ASN 182 GLU 183 ASP 184 ARG 185 LYS 186 PHE 187 ARG 188 SER 189 LYS 190 HIS 191 VAL 192 ALA 193 GLY 194 ARG 195 TRP 196 LEU 197 GLU 198 LEU 199 GLN 200 PHE 201 GLY 202 TRP 203 LEU 204 PRO 205 LEU 206 MET 207 SER 208 ASP 209 ILE 210 GLN 211 GLY 212 ALA 213 TYR 214 GLU 215 MET 216 LEU 217 THR 218 LYS 219 VAL 220 HIS 221 LEU 222 GLN 223 GLU 224 PHE 225 LEU 226 PRO 227 MET 228 ARG 229 ALA 230 VAL 231 ARG 232 GLN 233 VAL 234 GLY 235 THR 236 ASN 237 ILE 238 LYS 239 LEU 240 ASP 241 GLY 242 GLN 252 THR 253 THR 254 CYS 255 ASN 256 ILE 257 SER 258 ARG 259 ARG 260 ILE 261 VAL 262 ILE 263 TRP 264 PHE 265 TYR 266 ILE 267 ASN 268 ASP 269 ALA 270 ARG 271 LEU 272 ALA 273 TRP 274 LEU 275 SER 276 SER 277 LEU 278 GLY 279 ILE 280 LEU 281 ASN 282 PRO 283 LEU 284 GLY 285 ILE 286 VAL 287 TRP 288 GLU 289 LYS 290 VAL 291 PRO 292 PHE 293 SER 294 PHE 295 VAL 296 VAL 297 ASP 298 TRP 299 LEU 300 LEU 301 PRO 302 VAL 303 GLY 304 ASN 305 MET 306 LEU 307 GLU 308 GLY 309 LEU 310 THR 311 ALA 312 PRO 313 VAL 314 GLY 315 CYS 316 SER 317 TYR 318 MET 319 SER 320 GLY 321 THR 322 VAL 323 THR 324 ASP 325 VAL 326 ILE 327 THR 328 GLY 329 GLU 330 SER 331 ILE 332 ILE 333 GLN 346 GLY 347 THR 348 ALA 349 LYS 350 ALA 351 GLN 352 ILE 353 SER 354 ALA 355 MET 356 HIS 357 ARG 358 GLY 359 VAL 360 GLN 361 SER 362 VAL 363 TRP 364 PRO 365 THR 366 THR 367 GLY 368 ALA 369 TYR 370 VAL 371 LYS 372 SER 373 PRO 374 PHE 375 SER 376 MET 377 VAL 378 HIS 379 THR 380 LEU 381 ASP 382 ALA 383 LEU 384 ALA 385 LEU 386 ILE 387 ARG 388 GLN 389 ARG 390 LEU 391 SER 392 ARG 393

Nucleic acids

Unit 10

G 102 G 103 A 104 A 105 U 106 U 107 C 108 C 109 A 110 U 111 U 112 C 113 C 114 C 179 C 180 G 181 U 182 U 183 C 184 G 185 C 186 G 187 U 188 U 189 U 190 A 191 C 192 G 193 C 194 G 195 G 196 A 197 C 198 G 199 G 200 C 593 G 594 C 595 A 596 A 597 A 598 C 599 C 600 A 601 U 602 U 603 G 604 C 605 G 606 C 902 G 903 C 904 G 905 A 906 C 907 G 908 U 909 A 910 U 911 C 912 G 913 U 914 G 915 C 977 A 978 C 979 U 980 A 981 G 982 G 983 U 984 A 985 U 986 A 987 G 988 U 989 G 990 U 1460 U 1461 A 1462 C 1463 A 1464 A 1465 A 1466 G 1467 U 1468 A 1469 A 1470 U 1720 C 1721 U 1722 A 1723 C 1724 U 1725 A 1726 A 1727 U 1728 A 1729 G 1730 A 1731 A 1748 U 1749 G 1750 A 1751 G 1752 G 1753 A 1754 U 1755 U 1756 A 1757 C 1758 C 1759 C 1760 A 1761 U 1762 G 1763 A 1776 A 1777 G 1778 A 1779 A 1780 G 1781 U 1782 U 1783 C 1784 A 1785 A 1786 C 1787 U 1788 C 1789 U 1790 U 1791 G 2040 A 2041 C 2042 A 2043 A 2044 A 2045 U 2046 C 2047 C 2048 U 2049 U 2050 G 2051 U 2052 C 2053 C 2374 U 2375 G 2376 C 2377 C 2378 U 2379 G 2380 U 2381 A 2382 A 2383 G 2384 G 2385 A 2386 G 2387 U 2468 G 2469 A 2470 U 2471 C 2472 A 2473 A 2474 U 2475 C 2476 G 2477 A 2478 U 2479 C 2480 A 2481 G 2781 A 2782 C 2783 G 2784 A 2785 U 2786 A 2787 U 2788 U 2789 A 2790 U 2791 A 2792 U 2793 G 2794 U 2795 C 2796 C 2840 G 2841 G 2842 U 2843 U 2844 U 2845 U 2846 A 2847 A 2848 A 2849 C 2850 C 2851 G 2852 A 3359 U 3360 U 3361 C 3362 C 3363 C 3364 U 3365 C 3366 A 3367 G 3368 G 3369 A 3370 G 3371 U 3372 G 3540 U 3541 A 3542 A 3543 C 3544 U 3545 A 3546 G 3547 C 3548 U 3549 G 3550 C 3551 U 3552 U 3553 G 3554 G 3555 C 3556 U 3557 A 3558 G 3559 U 3560 U 3561 A 3562 C 3563 C 3564