5T9J - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN GEN1 IN COMPLEX WITH HOLLIDAY JUN IN THE UPPER INTERFACE
• Keywords: PROTEIN-DNA COMPLEX, HOLLIDAY JUNCTION RESOLVASE, STRUCTURE- ENDONUCLEASE, DNA FOUR-WAY JUNCTION, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5T9J	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FLAP ENDONUCLEASE GEN HOMOLOG 1	A	390	3144	0
2	Protein	FLAP ENDONUCLEASE GEN HOMOLOG 1	B	391	3154	0
3	Other macromolecule	DNA (5'- D(*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DAP*DGP* P*DTP*DGP*DC)-3')	C	20	407	0
4	Other macromolecule	DNA (5'- D(*DGP*DCP*DAP*DTP*DCP*DCP*DCP*DTP*DAP*DAP*DGP*DCP*DTP*DCP* P*DCP*DGP*DT)-3')	D	20	409	0
5	Other macromolecule	DNA (5'- D(*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DCP*DGP*DCP*DTP* P*DCP*DTP*DC)-3')	E	19	379	0
6	Other macromolecule	DNA (5'- D(*DGP*DAP*DGP*DCP*DCP*DTP*DAP*DGP*DCP*DGP*DTP*DCP*DCP*DGP* P*DTP*DTP*DC)-3')	F	19	394	0
7	Ligand	FLAP ENDONUCLEASE GEN HOMOLOG 1	A	8	0	43
8	Ligand	FLAP ENDONUCLEASE GEN HOMOLOG 1	B	6	0	31
9	Ligand	DNA (5'- D(*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DAP*DGP* P*DTP*DGP*DC)-3')	C	3	0	18
10	Water			22	0	23
total				898	7887	115

Proteins

Unit 1

GLY 2 VAL 3 ASN 4 ASP 5 LEU 6 TRP 7 GLN 8 ILE 9 LEU 10 GLU 11 PRO 12 VAL 13 LYS 14 GLN 15 HIS 16 ILE 17 PRO 18 LEU 19 ARG 20 ASN 21 LEU 22 GLY 23 GLY 24 LYS 25 THR 26 ILE 27 ALA 28 VAL 29 ASN 30 LEU 31 SER 32 LEU 33 TRP 34 VAL 35 CYS 36 GLU 37 ALA 38 GLN 39 THR 40 VAL 41 LYS 42 LYS 43 MET 44 MET 45 GLY 46 SER 47 VAL 48 MET 49 LYS 50 PRO 51 HIS 52 LEU 53 ARG 54 ASN 55 LEU 56 PHE 57 PHE 58 ARG 59 ILE 60 SER 61 TYR 62 LEU 63 THR 64 GLN 65 MET 66 ASP 67 VAL 68 LYS 69 LEU 70 VAL 71 PHE 72 VAL 73 MET 74 GLU 75 GLY 76 GLU 77 PRO 78 PRO 79 LYS 80 LEU 81 GLN 91 THR 92 ARG 93 TYR 94 GLY 95 SER 96 SER 97 GLY 98 LYS 99 SER 100 TRP 101 SER 102 GLN 103 LYS 104 THR 105 GLY 106 ARG 107 SER 108 HIS 109 PHE 110 LYS 111 SER 112 VAL 113 LEU 114 ARG 115 GLU 116 CYS 117 LEU 118 HIS 119 MET 120 LEU 121 GLU 122 CYS 123 LEU 124 GLY 125 ILE 126 PRO 127 TRP 128 VAL 129 GLN 130 ALA 131 ALA 132 GLY 133 GLU 134 ALA 135 GLU 136 ALA 137 MET 138 CYS 139 ALA 140 TYR 141 LEU 142 ASN 143 ALA 144 GLY 145 GLY 146 HIS 147 VAL 148 ASP 149 GLY 150 CYS 151 LEU 152 THR 153 ASN 154 ASP 155 GLY 156 ASP 157 THR 158 PHE 159 LEU 160 TYR 161 GLY 162 ALA 163 GLN 164 THR 165 VAL 166 TYR 167 ARG 168 ASN 169 PHE 170 THR 171 MET 172 ASN 173 THR 174 LYS 175 ASP 176 PRO 177 HIS 178 VAL 179 ASP 180 CYS 181 TYR 182 THR 183 MET 184 SER 185 SER 186 ILE 187 LYS 188 SER 189 LYS 190 LEU 191 GLY 192 LEU 193 ASP 194 ARG 195 ASP 196 ALA 197 LEU 198 VAL 199 GLY 200 LEU 201 ALA 202 ILE 203 LEU 204 LEU 205 GLY 206 CYS 207 ASP 208 TYR 209 LEU 210 PRO 211 LYS 212 GLY 213 VAL 214 PRO 215 GLY 216 VAL 217 GLY 218 LYS 219 GLU 220 GLN 221 ALA 222 LEU 223 LYS 224 LEU 225 ILE 226 GLN 227 ILE 228 LEU 229 LYS 230 GLY 231 GLN 232 SER 233 LEU 234 LEU 235 GLN 236 ARG 237 PHE 238 ASN 239 ARG 240 TRP 241 ASN 242 ASN 310 GLU 311 VAL 312 GLU 313 ASN 314 ASN 315 ILE 316 LYS 317 LYS 318 LYS 319 ALA 320 CYS 321 CYS 322 CYS 323 GLU 324 GLY 325 PHE 326 PRO 327 PHE 328 HIS 329 GLU 330 VAL 331 ILE 332 GLN 333 GLU 334 PHE 335 LEU 336 LEU 337 ASN 338 LYS 339 ASP 340 LYS 341 LEU 342 VAL 343 LYS 344 VAL 345 ILE 346 ARG 347 TYR 348 GLN 349 ARG 350 PRO 351 ASP 352 LEU 353 LEU 354 LEU 355 PHE 356 GLN 357 ARG 358 PHE 359 THR 360 LEU 361 GLU 362 LYS 363 MET 364 GLU 365 TRP 366 PRO 367 ASN 368 HIS 369 TYR 370 ALA 371 CYS 372 GLU 373 LYS 374 LEU 375 LEU 376 VAL 377 LEU 378 LEU 379 THR 380 HIS 381 TYR 382 ASP 383 MET 384 ILE 385 GLU 386 ARG 387 LYS 388 LEU 389 GLY 390 SER 391 ARG 392 ASN 393 SER 394 ASN 395 GLN 396 LEU 397 GLN 398 PRO 399 ILE 400 ARG 401 ILE 402 VAL 403 LYS 404 THR 405 ARG 406 ILE 407 ARG 408 ASN 409 GLY 410 VAL 411 HIS 412 CYS 413 PHE 414 GLU 415 ILE 416 GLU 417 TRP 418 GLU 419 LYS 420 PRO 421 GLU 422 HIS 423 TYR 424 ALA 425 MET 426 GLU 427 ASP 428 LYS 429 GLN 430 HIS 431 GLY 432 GLU 433 PHE 434 ALA 435 LEU 436 LEU 437 THR 438 ILE 439 GLU 440 GLU 441 GLU 442 SER 443 LEU 444 PHE 445 GLU 446 ALA 447 ALA 448 TYR 449 PRO 450 GLU 451 ILE 452 VAL 453 ALA 454 VAL 455 TYR 456 GLN 457 LYS 458 GLN 459 LYS 460 LEU 461 GLU 462 ILE 463 LYS 464 GLY 465 LYS 466 LYS 467

Unit 2

GLY 2 VAL 3 ASN 4 ASP 5 LEU 6 TRP 7 GLN 8 ILE 9 LEU 10 GLU 11 PRO 12 VAL 13 LYS 14 GLN 15 HIS 16 ILE 17 PRO 18 LEU 19 ARG 20 ASN 21 LEU 22 GLY 23 GLY 24 LYS 25 THR 26 ILE 27 ALA 28 VAL 29 ASN 30 LEU 31 SER 32 LEU 33 TRP 34 VAL 35 CYS 36 GLU 37 ALA 38 GLN 39 THR 40 VAL 41 LYS 42 LYS 43 MET 44 MET 45 GLY 46 SER 47 VAL 48 MET 49 LYS 50 PRO 51 HIS 52 LEU 53 ARG 54 ASN 55 LEU 56 PHE 57 PHE 58 ARG 59 ILE 60 SER 61 TYR 62 LEU 63 THR 64 GLN 65 MET 66 ASP 67 VAL 68 LYS 69 LEU 70 VAL 71 PHE 72 VAL 73 MET 74 GLU 75 GLY 76 GLU 77 PRO 78 PRO 79 LYS 80 LEU 81 ARG 93 TYR 94 GLY 95 SER 96 SER 97 GLY 98 LYS 99 SER 100 TRP 101 SER 102 GLN 103 LYS 104 THR 105 GLY 106 ARG 107 SER 108 HIS 109 PHE 110 LYS 111 SER 112 VAL 113 LEU 114 ARG 115 GLU 116 CYS 117 LEU 118 HIS 119 MET 120 LEU 121 GLU 122 CYS 123 LEU 124 GLY 125 ILE 126 PRO 127 TRP 128 VAL 129 GLN 130 ALA 131 ALA 132 GLY 133 GLU 134 ALA 135 GLU 136 ALA 137 MET 138 CYS 139 ALA 140 TYR 141 LEU 142 ASN 143 ALA 144 GLY 145 GLY 146 HIS 147 VAL 148 ASP 149 GLY 150 CYS 151 LEU 152 THR 153 ASN 154 ASP 155 GLY 156 ASP 157 THR 158 PHE 159 LEU 160 TYR 161 GLY 162 ALA 163 GLN 164 THR 165 VAL 166 TYR 167 ARG 168 ASN 169 PHE 170 THR 171 MET 172 ASN 173 THR 174 LYS 175 ASP 176 PRO 177 HIS 178 VAL 179 ASP 180 CYS 181 TYR 182 THR 183 MET 184 SER 185 SER 186 ILE 187 LYS 188 SER 189 LYS 190 LEU 191 GLY 192 LEU 193 ASP 194 ARG 195 ASP 196 ALA 197 LEU 198 VAL 199 GLY 200 LEU 201 ALA 202 ILE 203 LEU 204 LEU 205 GLY 206 CYS 207 ASP 208 TYR 209 LEU 210 PRO 211 LYS 212 GLY 213 VAL 214 PRO 215 GLY 216 VAL 217 GLY 218 LYS 219 GLU 220 GLN 221 ALA 222 LEU 223 LYS 224 LEU 225 ILE 226 GLN 227 ILE 228 LEU 229 LYS 230 GLY 231 GLN 232 SER 233 LEU 234 LEU 235 GLN 236 ARG 237 PHE 238 ASN 239 ARG 240 TRP 241 ASN 242 GLN 308 LEU 309 ASN 310 GLU 311 VAL 312 GLU 313 ASN 314 ASN 315 ILE 316 LYS 317 LYS 318 LYS 319 ALA 320 CYS 321 CYS 322 CYS 323 GLU 324 GLY 325 PHE 326 PRO 327 PHE 328 HIS 329 GLU 330 VAL 331 ILE 332 GLN 333 GLU 334 PHE 335 LEU 336 LEU 337 ASN 338 LYS 339 ASP 340 LYS 341 LEU 342 VAL 343 LYS 344 VAL 345 ILE 346 ARG 347 TYR 348 GLN 349 ARG 350 PRO 351 ASP 352 LEU 353 LEU 354 LEU 355 PHE 356 GLN 357 ARG 358 PHE 359 THR 360 LEU 361 GLU 362 LYS 363 MET 364 GLU 365 TRP 366 PRO 367 ASN 368 HIS 369 TYR 370 ALA 371 CYS 372 GLU 373 LYS 374 LEU 375 LEU 376 VAL 377 LEU 378 LEU 379 THR 380 HIS 381 TYR 382 ASP 383 MET 384 ILE 385 GLU 386 ARG 387 LYS 388 LEU 389 GLY 390 SER 391 ARG 392 ASN 393 SER 394 ASN 395 GLN 396 LEU 397 GLN 398 PRO 399 ILE 400 ARG 401 ILE 402 VAL 403 LYS 404 THR 405 ARG 406 ILE 407 ARG 408 ASN 409 GLY 410 VAL 411 HIS 412 CYS 413 PHE 414 GLU 415 ILE 416 GLU 417 TRP 418 GLU 419 LYS 420 PRO 421 GLU 422 HIS 423 TYR 424 ALA 425 MET 426 GLU 427 ASP 428 LYS 429 GLN 430 HIS 431 GLY 432 GLU 433 PHE 434 ALA 435 LEU 436 LEU 437 THR 438 ILE 439 GLU 440 GLU 441 GLU 442 SER 443 LEU 444 PHE 445 GLU 446 ALA 447 ALA 448 TYR 449 PRO 450 GLU 451 ILE 452 VAL 453 ALA 454 VAL 455 TYR 456 GLN 457 LYS 458 GLN 459 LYS 460 LEU 461 GLU 462 ILE 463 LYS 464 GLY 465 LYS 466 LYS 467 GLN 468

Other macromolecules

Unit 3	DG 1 DA 2 DG 3 DC 4 DC 5 DT 6 DA 7 DG 8 DC 9 DG 10 DT 11 DC 12 DC 13 DG 14 DG 15 DA 16 DA 17 DT 18 DT 19 DC 20
Unit 4	DA 1 DC 2 DG 3 DA 4 DT 5 DG 6 DG 7 DA 8 DG 9 DC 10 DC 11 DG 12 DC 13 DT 14 DA 15 DG 16 DG 17 DC 18 DT 19 DC 20
Unit 5	DG 1 DC 2 DA 3 DT 4 DC 5 DC 6 DC 7 DT 8 DA 9 DA 10 DG 11 DC 12 DT 13 DC 14 DC 15 DA 16 DT 17 DC 18 DG 19
Unit 6	DA 2 DA 3 DT 4 DT 5 DC 6 DC 7 DG 8 DG 9 DA 10 DT 11 DT 12 DA 13 DG 14 DG 15 DG 16 DA 17 DT 18 DG 19 DC 20

Ligands

Unit 7	GOL 601 GOL 602 GOL 603 GOL 604 GOL 605 GOL 606 GOL 607 MG 608
Unit 8	GOL 601 GOL 602 GOL 603 GOL 604 GOL 605 MG 606
Unit 9	GOL 101 GOL 102 GOL 103