5T8Y - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF EPOXYQUEUOSINE REDUCTASE FROM BACILLUS SUBTILIS ASP134 CATALYTIC LOOP SWUNG OUT OF THE ACTIVE SITE.
• Keywords: B12, COBALAMIN, IRON SULFUR CLUSTER, TRNA MODIFYING ENZYME, OXIDOREDUCTASE-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5T8Y	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	EPOXYQUEUOSINE REDUCTASE	A	374	2942	0
2	Protein	EPOXYQUEUOSINE REDUCTASE	B	372	2929	0
3	RNA		X	5	107	0
4	Ligand	EPOXYQUEUOSINE REDUCTASE	A	5	0	117
5	Ligand	EPOXYQUEUOSINE REDUCTASE	B	8	0	132
6	Water			14	0	14
total				778	5978	263

Proteins

Unit 1

ASN 2 VAL 3 TYR 4 GLN 5 LEU 6 LYS 7 GLU 8 GLU 9 LEU 10 ILE 11 GLU 12 TYR 13 ALA 14 LYS 15 SER 16 ILE 17 GLY 18 VAL 19 ASP 20 LYS 21 ILE 22 GLY 23 PHE 24 THR 25 THR 26 ALA 27 ASP 28 THR 29 PHE 30 ASP 31 SER 32 LEU 33 LYS 34 ASP 35 ARG 36 LEU 37 ILE 38 LEU 39 GLN 40 GLU 41 SER 42 LEU 43 GLY 44 TYR 45 LEU 46 SER 47 GLY 48 PHE 49 GLU 50 GLU 51 PRO 52 ASP 53 ILE 54 GLU 55 LYS 56 ARG 57 VAL 58 THR 59 PRO 60 LYS 61 LEU 62 LEU 63 LEU 64 PRO 65 LYS 66 ALA 67 LYS 68 SER 69 ILE 70 VAL 71 ALA 72 ILE 73 ALA 74 LEU 75 ALA 76 TYR 77 PRO 78 SER 79 ARG 80 MET 81 LYS 82 ASP 83 ALA 84 PRO 85 ARG 86 SER 87 THR 88 ARG 89 THR 90 GLU 91 ARG 92 ARG 93 GLY 94 ILE 95 PHE 96 CYS 97 ARG 98 ALA 99 SER 100 TRP 101 GLY 102 LYS 103 ASP 104 TYR 105 HIS 106 ASP 107 VAL 108 LEU 109 ARG 110 GLU 111 LYS 112 LEU 113 ASP 114 LEU 115 LEU 116 GLU 117 ASP 118 PHE 119 LEU 120 LYS 121 SER 122 LYS 123 HIS 124 GLU 125 ASP 126 ILE 127 ARG 128 THR 129 LYS 130 SER 131 MET 132 VAL 133 ASP 134 THR 135 GLY 136 GLU 137 LEU 138 SER 139 ASP 140 ARG 141 ALA 142 VAL 143 ALA 144 GLU 145 ARG 146 ALA 147 GLY 148 ILE 149 GLY 150 PHE 151 SER 152 ALA 153 LYS 154 ASN 155 CYS 156 MET 157 ILE 158 THR 159 THR 160 PRO 161 GLU 162 TYR 163 GLY 164 SER 165 TYR 166 VAL 167 TYR 168 LEU 169 ALA 170 GLU 171 MET 172 ILE 173 THR 174 ASN 175 ILE 176 PRO 177 PHE 178 GLU 179 PRO 180 ASP 181 VAL 182 PRO 183 ILE 184 GLU 185 ASP 186 MET 187 CYS 188 GLY 189 SER 190 CYS 191 THR 192 LYS 193 CYS 194 LEU 195 ASP 196 ALA 197 CYS 198 PRO 199 THR 200 GLY 201 ALA 202 LEU 203 VAL 204 ASN 205 PRO 206 GLY 207 GLN 208 LEU 209 ASN 210 ALA 211 GLN 212 ARG 213 CYS 214 ILE 215 SER 216 PHE 217 LEU 218 THR 219 GLN 220 THR 221 LYS 222 GLY 223 PHE 224 LEU 225 PRO 226 ASP 227 GLU 228 PHE 229 ARG 230 THR 231 LYS 232 ILE 233 GLY 234 ASN 235 ARG 236 LEU 237 TYR 238 GLY 239 CYS 240 ASP 241 THR 242 CYS 243 GLN 244 THR 245 VAL 246 CYS 247 PRO 248 LEU 249 ASN 250 LYS 251 GLY 252 LYS 253 ASP 254 PHE 255 HIS 256 LEU 257 HIS 258 PRO 259 GLU 260 MET 261 GLU 262 PRO 263 ASP 264 PRO 265 GLU 266 ILE 267 ALA 268 LYS 269 PRO 270 LEU 271 LEU 272 LYS 273 PRO 274 LEU 275 LEU 276 ALA 277 ILE 278 SER 279 ASN 280 ARG 281 GLU 282 PHE 283 LYS 284 GLU 285 LYS 286 PHE 287 GLY 288 HIS 289 VAL 290 SER 291 GLY 292 SER 293 TRP 294 ARG 295 GLY 296 LYS 297 LYS 298 PRO 299 ILE 300 GLN 301 ARG 302 ASN 303 ALA 304 ILE 305 LEU 306 ALA 307 LEU 308 ALA 309 HIS 310 PHE 311 LYS 312 ASP 313 ALA 314 SER 315 ALA 316 LEU 317 PRO 318 GLU 319 LEU 320 THR 321 GLU 322 LEU 323 MET 324 HIS 325 LYS 326 ASP 327 PRO 328 ARG 329 PRO 330 VAL 331 ILE 332 ARG 333 GLY 334 THR 335 ALA 336 ALA 337 TRP 338 ALA 339 ILE 340 GLY 341 LYS 342 ILE 343 GLY 344 ASP 345 PRO 346 ALA 347 TYR 348 ALA 349 GLU 350 GLU 351 LEU 352 GLU 353 LYS 354 ALA 355 LEU 356 GLU 357 LYS 358 GLU 359 LYS 360 ASP 361 GLU 362 GLU 363 ALA 364 LYS 365 LEU 366 GLU 367 ILE 368 GLU 369 LYS 370 GLY 371 ILE 372 GLU 373 LEU 374 LEU 375

Unit 2

ASN 2 VAL 3 TYR 4 GLN 5 LEU 6 LYS 7 GLU 8 GLU 9 LEU 10 ILE 11 GLU 12 TYR 13 ALA 14 LYS 15 SER 16 ILE 17 GLY 18 VAL 19 ASP 20 LYS 21 ILE 22 GLY 23 PHE 24 THR 25 THR 26 ALA 27 ASP 28 THR 29 PHE 30 ASP 31 SER 32 LEU 33 LYS 34 ASP 35 ARG 36 LEU 37 ILE 38 LEU 39 GLN 40 GLU 41 SER 42 LEU 43 GLY 44 TYR 45 LEU 46 SER 47 GLY 48 PHE 49 GLU 50 GLU 51 PRO 52 ASP 53 ILE 54 GLU 55 LYS 56 ARG 57 VAL 58 THR 59 PRO 60 LYS 61 LEU 62 LEU 63 LEU 64 PRO 65 LYS 66 ALA 67 LYS 68 SER 69 ILE 70 VAL 71 ALA 72 ILE 73 ALA 74 LEU 75 ALA 76 TYR 77 PRO 78 SER 79 ARG 80 MET 81 LYS 82 ASP 83 ALA 84 PRO 85 ARG 86 SER 87 THR 88 ARG 89 THR 90 GLU 91 ARG 92 ARG 93 GLY 94 ILE 95 PHE 96 CYS 97 ARG 98 ALA 99 SER 100 TRP 101 GLY 102 LYS 103 ASP 104 TYR 105 HIS 106 ASP 107 VAL 108 LEU 109 ARG 110 GLU 111 LYS 112 LEU 113 ASP 114 LEU 115 LEU 116 GLU 117 ASP 118 PHE 119 LEU 120 LYS 121 SER 122 LYS 123 HIS 124 GLU 125 ASP 126 ILE 127 ARG 128 THR 129 LYS 130 SER 131 MET 132 GLY 136 GLU 137 LEU 138 SER 139 ASP 140 ARG 141 ALA 142 VAL 143 ALA 144 GLU 145 ARG 146 ALA 147 GLY 148 ILE 149 GLY 150 PHE 151 SER 152 ALA 153 LYS 154 ASN 155 CYS 156 MET 157 ILE 158 THR 159 THR 160 PRO 161 GLU 162 TYR 163 GLY 164 SER 165 TYR 166 VAL 167 TYR 168 LEU 169 ALA 170 GLU 171 MET 172 ILE 173 THR 174 ASN 175 ILE 176 PRO 177 PHE 178 GLU 179 PRO 180 ASP 181 VAL 182 PRO 183 ILE 184 GLU 185 ASP 186 MET 187 CYS 188 GLY 189 SER 190 CYS 191 THR 192 LYS 193 CYS 194 LEU 195 ASP 196 ALA 197 CYS 198 PRO 199 THR 200 GLY 201 ALA 202 LEU 203 VAL 204 ASN 205 PRO 206 GLY 207 GLN 208 LEU 209 ASN 210 ALA 211 GLN 212 ARG 213 CYS 214 ILE 215 SER 216 PHE 217 LEU 218 THR 219 GLN 220 THR 221 LYS 222 GLY 223 PHE 224 LEU 225 PRO 226 ASP 227 GLU 228 PHE 229 ARG 230 THR 231 LYS 232 ILE 233 GLY 234 ASN 235 ARG 236 LEU 237 TYR 238 GLY 239 CYS 240 ASP 241 THR 242 CYS 243 GLN 244 THR 245 VAL 246 CYS 247 PRO 248 LEU 249 ASN 250 LYS 251 GLY 252 LYS 253 ASP 254 PHE 255 HIS 256 LEU 257 HIS 258 PRO 259 GLU 260 MET 261 GLU 262 PRO 263 ASP 264 PRO 265 GLU 266 ILE 267 ALA 268 LYS 269 PRO 270 LEU 271 LEU 272 LYS 273 PRO 274 LEU 275 LEU 276 ALA 277 ILE 278 SER 279 ASN 280 ARG 281 GLU 282 PHE 283 LYS 284 GLU 285 LYS 286 PHE 287 GLY 288 HIS 289 VAL 290 SER 291 GLY 292 SER 293 TRP 294 ARG 295 GLY 296 LYS 297 LYS 298 PRO 299 ILE 300 GLN 301 ARG 302 ASN 303 ALA 304 ILE 305 LEU 306 ALA 307 LEU 308 ALA 309 HIS 310 PHE 311 LYS 312 ASP 313 ALA 314 SER 315 ALA 316 LEU 317 PRO 318 GLU 319 LEU 320 THR 321 GLU 322 LEU 323 MET 324 HIS 325 LYS 326 ASP 327 PRO 328 ARG 329 PRO 330 VAL 331 ILE 332 ARG 333 GLY 334 THR 335 ALA 336 ALA 337 TRP 338 ALA 339 ILE 340 GLY 341 LYS 342 ILE 343 GLY 344 ASP 345 PRO 346 ALA 347 TYR 348 ALA 349 GLU 350 GLU 351 LEU 352 GLU 353 LYS 354 ALA 355 LEU 356 GLU 357 LYS 358 GLU 359 LYS 360 ASP 361 GLU 362 GLU 363 ALA 364 LYS 365 LEU 366 GLU 367 ILE 368 GLU 369 LYS 370 GLY 371 ILE 372 GLU 373 LEU 374 LEU 375 LYS 376

Nucleic acids

Unit 3

A 29 G 30 A 31 C 32 U 33

Ligands

Unit 4	SF4 501 SF4 502 B12 503 PO4 504 PO4 505
Unit 5	SF4 501 SF4 502 B12 503 PO4 504 PO4 505 PO4 506 PO4 507 PO4 508