5T35 - Sequence, Chains, Asymmetric and Biological Units

• Title: THE PROTAC MZ1 IN COMPLEX WITH THE SECOND BROMODOMAIN OF BRD PVHL:ELONGINC:ELONGINB
• Keywords: PROTAC COMPLEX, TARGETED DEGRADATION, CHROMATIN READER, UBIQ LIGASE, BIFUNCTIONAL LIGAND, LIGASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5T35	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BROMODOMAIN-CONTAINING PROTEIN 4	A	111	885	0
2	Protein	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2	B	104	814	0
3	Protein	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1	C	87	689	0
4	Protein	VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR	D	149	1215	0
5	Protein	BROMODOMAIN-CONTAINING PROTEIN 4	E	111	895	0
6	Protein	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2	F	104	810	0
7	Protein	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1	G	88	689	0
8	Protein	VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR	H	147	1188	0
9	Ligand	VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR	D	1	0	69
10	Ligand	VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR	H	1	0	69
11	Water			85	0	86
total				988	7185	224

Proteins

Unit 1	LYS 349 VAL 350 SER 351 GLU 352 GLN 353 LEU 354 LYS 355 CYS 356 CYS 357 SER 358 GLY 359 ILE 360 LEU 361 LYS 362 GLU 363 MET 364 PHE 365 ALA 366 LYS 367 LYS 368 HIS 369 ALA 370 ALA 371 TYR 372 ALA 373 TRP 374 PRO 375 PHE 376 TYR 377 LYS 378 PRO 379 VAL 380 ASP 381 VAL 382 GLU 383 ALA 384 LEU 385 GLY 386 LEU 387 HIS 388 ASP 389 TYR 390 CYS 391 ASP 392 ILE 393 ILE 394 LYS 395 HIS 396 PRO 397 MET 398 ASP 399 MET 400 SER 401 THR 402 ILE 403 LYS 404 SER 405 LYS 406 LEU 407 GLU 408 ALA 409 ARG 410 GLU 411 TYR 412 ARG 413 ASP 414 ALA 415 GLN 416 GLU 417 PHE 418 GLY 419 ALA 420 ASP 421 VAL 422 ARG 423 LEU 424 MET 425 PHE 426 SER 427 ASN 428 CYS 429 TYR 430 LYS 431 TYR 432 ASN 433 PRO 434 PRO 435 ASP 436 HIS 437 GLU 438 VAL 439 VAL 440 ALA 441 MET 442 ALA 443 ARG 444 LYS 445 LEU 446 GLN 447 ASP 448 VAL 449 PHE 450 GLU 451 MET 452 ARG 453 PHE 454 ALA 455 LYS 456 MET 457 PRO 458 ASP 459
Unit 2	MET 1 ASP 2 VAL 3 PHE 4 LEU 5 MET 6 ILE 7 ARG 8 ARG 9 HIS 10 LYS 11 THR 12 THR 13 ILE 14 PHE 15 THR 16 ASP 17 ALA 18 LYS 19 GLU 20 SER 21 SER 22 THR 23 VAL 24 PHE 25 GLU 26 LEU 27 LYS 28 ARG 29 ILE 30 VAL 31 GLU 32 GLY 33 ILE 34 LEU 35 LYS 36 ARG 37 PRO 38 PRO 39 ASP 40 GLU 41 GLN 42 ARG 43 LEU 44 TYR 45 LYS 46 ASP 47 ASP 48 GLN 49 LEU 50 LEU 51 ASP 52 ASP 53 GLY 54 LYS 55 THR 56 LEU 57 GLY 58 GLU 59 CYS 60 GLY 61 PHE 62 THR 63 SER 64 GLN 65 THR 66 ALA 67 ARG 68 PRO 69 GLN 70 ALA 71 PRO 72 ALA 73 THR 74 VAL 75 GLY 76 LEU 77 ALA 78 PHE 79 ARG 80 ALA 81 ASP 82 ASP 83 THR 84 PHE 85 GLU 86 ALA 87 LEU 88 CYS 89 ILE 90 GLU 91 PRO 92 PHE 93 SER 94 SER 95 PRO 96 PRO 97 GLU 98 LEU 99 PRO 100 ASP 101 VAL 102 MET 103 LYS 104
Unit 3	MET 16 MET 17 TYR 18 VAL 19 LYS 20 LEU 21 ILE 22 SER 23 SER 24 ASP 25 GLY 26 HIS 27 GLU 28 PHE 29 ILE 30 VAL 31 LYS 32 ARG 33 GLU 34 HIS 35 ALA 36 LEU 37 THR 38 SER 39 GLY 40 THR 41 ILE 42 LYS 43 ALA 44 MET 45 LEU 46 SER 47 ASN 58 GLU 59 VAL 60 ASN 61 PHE 62 ARG 63 GLU 64 ILE 65 PRO 66 SER 67 HIS 68 VAL 69 LEU 70 SER 71 LYS 72 VAL 73 CYS 74 MET 75 TYR 76 PHE 77 THR 78 TYR 79 LYS 80 VAL 81 ARG 82 TYR 83 THR 84 ASN 85 SER 86 SER 87 THR 88 GLU 89 ILE 90 PRO 91 GLU 92 PHE 93 PRO 94 ILE 95 ALA 96 PRO 97 GLU 98 ILE 99 ALA 100 LEU 101 GLU 102 LEU 103 LEU 104 MET 105 ALA 106 ALA 107 ASN 108 PHE 109 LEU 110 ASP 111 CYS 112
Unit 4	PRO 61 VAL 62 LEU 63 ARG 64 SER 65 VAL 66 ASN 67 SER 68 ARG 69 GLU 70 PRO 71 SER 72 GLN 73 VAL 74 ILE 75 PHE 76 CYS 77 ASN 78 ARG 79 SER 80 PRO 81 ARG 82 VAL 83 VAL 84 LEU 85 PRO 86 VAL 87 TRP 88 LEU 89 ASN 90 PHE 91 ASP 92 GLY 93 GLU 94 PRO 95 GLN 96 PRO 97 TYR 98 PRO 99 THR 100 LEU 101 PRO 102 PRO 103 GLY 104 THR 105 GLY 106 ARG 107 ARG 108 ILE 109 HIS 110 SER 111 TYR 112 ARG 113 GLY 114 HIS 115 LEU 116 TRP 117 LEU 118 PHE 119 ARG 120 ASP 121 ALA 122 GLY 123 THR 124 HIS 125 ASP 126 GLY 127 LEU 128 LEU 129 VAL 130 ASN 131 GLN 132 THR 133 GLU 134 LEU 135 PHE 136 VAL 137 PRO 138 SER 139 LEU 140 ASN 141 VAL 142 ASP 143 GLY 144 GLN 145 PRO 146 ILE 147 PHE 148 ALA 149 ASN 150 ILE 151 THR 152 LEU 153 PRO 154 VAL 155 TYR 156 THR 157 LEU 158 LYS 159 GLU 160 ARG 161 CYS 162 LEU 163 GLN 164 VAL 165 VAL 166 ARG 167 SER 168 LEU 169 VAL 170 LYS 171 PRO 172 GLU 173 ASN 174 TYR 175 ARG 176 ARG 177 LEU 178 ASP 179 ILE 180 VAL 181 ARG 182 SER 183 LEU 184 TYR 185 GLU 186 ASP 187 LEU 188 GLU 189 ASP 190 HIS 191 PRO 192 ASN 193 VAL 194 GLN 195 LYS 196 ASP 197 LEU 198 GLU 199 ARG 200 LEU 201 THR 202 GLN 203 GLU 204 ARG 205 ILE 206 ALA 207 HIS 208 GLN 209
Unit 5	LYS 349 VAL 350 SER 351 GLU 352 GLN 353 LEU 354 LYS 355 CYS 356 CYS 357 SER 358 GLY 359 ILE 360 LEU 361 LYS 362 GLU 363 MET 364 PHE 365 ALA 366 LYS 367 LYS 368 HIS 369 ALA 370 ALA 371 TYR 372 ALA 373 TRP 374 PRO 375 PHE 376 TYR 377 LYS 378 PRO 379 VAL 380 ASP 381 VAL 382 GLU 383 ALA 384 LEU 385 GLY 386 LEU 387 HIS 388 ASP 389 TYR 390 CYS 391 ASP 392 ILE 393 ILE 394 LYS 395 HIS 396 PRO 397 MET 398 ASP 399 MET 400 SER 401 THR 402 ILE 403 LYS 404 SER 405 LYS 406 LEU 407 GLU 408 ALA 409 ARG 410 GLU 411 TYR 412 ARG 413 ASP 414 ALA 415 GLN 416 GLU 417 PHE 418 GLY 419 ALA 420 ASP 421 VAL 422 ARG 423 LEU 424 MET 425 PHE 426 SER 427 ASN 428 CYS 429 TYR 430 LYS 431 TYR 432 ASN 433 PRO 434 PRO 435 ASP 436 HIS 437 GLU 438 VAL 439 VAL 440 ALA 441 MET 442 ALA 443 ARG 444 LYS 445 LEU 446 GLN 447 ASP 448 VAL 449 PHE 450 GLU 451 MET 452 ARG 453 PHE 454 ALA 455 LYS 456 MET 457 PRO 458 ASP 459
Unit 6	MET 1 ASP 2 VAL 3 PHE 4 LEU 5 MET 6 ILE 7 ARG 8 ARG 9 HIS 10 LYS 11 THR 12 THR 13 ILE 14 PHE 15 THR 16 ASP 17 ALA 18 LYS 19 GLU 20 SER 21 SER 22 THR 23 VAL 24 PHE 25 GLU 26 LEU 27 LYS 28 ARG 29 ILE 30 VAL 31 GLU 32 GLY 33 ILE 34 LEU 35 LYS 36 ARG 37 PRO 38 PRO 39 ASP 40 GLU 41 GLN 42 ARG 43 LEU 44 TYR 45 LYS 46 ASP 47 ASP 48 GLN 49 LEU 50 LEU 51 ASP 52 ASP 53 GLY 54 LYS 55 THR 56 LEU 57 GLY 58 GLU 59 CYS 60 GLY 61 PHE 62 THR 63 SER 64 GLN 65 THR 66 ALA 67 ARG 68 PRO 69 GLN 70 ALA 71 PRO 72 ALA 73 THR 74 VAL 75 GLY 76 LEU 77 ALA 78 PHE 79 ARG 80 ALA 81 ASP 82 ASP 83 THR 84 PHE 85 GLU 86 ALA 87 LEU 88 CYS 89 ILE 90 GLU 91 PRO 92 PHE 93 SER 94 SER 95 PRO 96 PRO 97 GLU 98 LEU 99 PRO 100 ASP 101 VAL 102 MET 103 LYS 104
Unit 7	MET 16 MET 17 TYR 18 VAL 19 LYS 20 LEU 21 ILE 22 SER 23 SER 24 ASP 25 GLY 26 HIS 27 GLU 28 PHE 29 ILE 30 VAL 31 LYS 32 ARG 33 GLU 34 HIS 35 ALA 36 LEU 37 THR 38 SER 39 GLY 40 THR 41 ILE 42 LYS 43 ALA 44 MET 45 LEU 46 SER 47 GLY 48 ASN 58 GLU 59 VAL 60 ASN 61 PHE 62 ARG 63 GLU 64 ILE 65 PRO 66 SER 67 HIS 68 VAL 69 LEU 70 SER 71 LYS 72 VAL 73 CYS 74 MET 75 TYR 76 PHE 77 THR 78 TYR 79 LYS 80 VAL 81 ARG 82 TYR 83 THR 84 ASN 85 SER 86 SER 87 THR 88 GLU 89 ILE 90 PRO 91 GLU 92 PHE 93 PRO 94 ILE 95 ALA 96 PRO 97 GLU 98 ILE 99 ALA 100 LEU 101 GLU 102 LEU 103 LEU 104 MET 105 ALA 106 ALA 107 ASN 108 PHE 109 LEU 110 ASP 111 CYS 112
Unit 8	PRO 61 VAL 62 LEU 63 ARG 64 SER 65 VAL 66 ASN 67 SER 68 ARG 69 GLU 70 PRO 71 SER 72 GLN 73 VAL 74 ILE 75 PHE 76 CYS 77 ASN 78 ARG 79 SER 80 PRO 81 ARG 82 VAL 83 VAL 84 LEU 85 PRO 86 VAL 87 TRP 88 LEU 89 ASN 90 PHE 91 ASP 92 GLY 93 GLU 94 PRO 95 GLN 96 PRO 97 TYR 98 PRO 99 THR 100 LEU 101 PRO 102 PRO 103 GLY 104 THR 105 GLY 106 ARG 107 ARG 108 ILE 109 HIS 110 SER 111 TYR 112 ARG 113 GLY 114 HIS 115 LEU 116 TRP 117 LEU 118 PHE 119 ARG 120 ASP 121 ALA 122 GLY 123 THR 124 HIS 125 ASP 126 GLY 127 LEU 128 LEU 129 VAL 130 ASN 131 GLN 132 THR 133 GLU 134 LEU 135 PHE 136 VAL 137 PRO 138 SER 139 LEU 140 ASN 141 VAL 142 ASP 143 GLY 144 GLN 145 PRO 146 ILE 147 PHE 148 ALA 149 ASN 150 ILE 151 THR 152 LEU 153 PRO 154 VAL 155 TYR 156 THR 157 LEU 158 LYS 159 GLU 160 ARG 161 CYS 162 LEU 163 GLN 164 VAL 165 VAL 166 ARG 167 SER 168 LEU 169 VAL 170 LYS 171 PRO 172 GLU 173 ASN 174 TYR 175 ARG 176 ARG 177 LEU 178 ASP 179 ILE 180 VAL 181 ARG 182 SER 183 LEU 184 TYR 185 GLU 186 ASP 187 LEU 188 GLU 189 ASP 190 HIS 191 PRO 192 ASN 193 VAL 194 GLN 195 LYS 196 ASP 197 LEU 198 GLU 199 ARG 200 LEU 201 THR 202 GLN 203 GLU 204 ARG 205 ILE 206 ALA 207

Ligands

Unit 9	759 301
Unit 10	759 301