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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE ADENINE RIBOSWITCH APTAMER DOMAIN IN AN INT BOUND STATE
Keywords ADENINE RIBOSWITCH, PURINE RIBOSWITCH, LIGAND MIXING, INTERM STATE, RNA, GENE REGULATION, X-RAY FREE ELECTRON LASER
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5SWD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 65 1383 0
2  RNA    B 68 1443 0
3  Ligand   VIBRIO VULNIFICUS STRAIN 93U204 CHROMOSOME II, AD RIBOSWITCH APTAMER DOMAIN  A 3 0 12
4  Ligand   VIBRIO VULNIFICUS STRAIN 93U204 CHROMOSOME II, AD RIBOSWITCH APTAMER DOMAIN  B 1 0 1
5 Water     15 0 15
total       152 2826 28

Nucleic acids
Unit 1 G13 G14 G15 A16 A17 G18 A19 U20 A21 U22 A23 A24 U25 C26 C27 U28 A29 A30 U31 G32 A33 U34 A35 U36 G37 G38 U39 U40 U41 G42 G43 G44 A45 G46 U47 U48 U49 C50 U51 A52 C53 C54 A55 A56 G57 A58 G59 C60 C61 U62 U63 A64 A65 A66 C67 U68 C69 U70 U71 G72 A73 U74 U75 A76 U77
Unit 2 G13 G14 G15 A16 A17 G18 A19 U20 A21 U22 A23 A24 U25 C26 C27 U28 A29 A30 U31 G32 A33 U34 A35 U36 G37 G38 U39 U40 U41 G42 G43 G44 A45 G46 U47 U48 U49 C50 U51 A52 C53 C54 A55 A56 G57 A58 G59 C60 C61 U62 U63 A64 A65 A66 C67 U68 C69 U70 U71 G72 A73 U74 U75 A76 U77 C78 U79 U80

Ligands
Unit 3 ADE101 MG102 MG103
Unit 4 MG101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany