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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE SUB2-YRA1 COMPLEX IN ASSOCIATION WI
Keywords MRNA EXPORT, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5SUP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ATP-DEPENDENT RNA HELICASE SUB2  A 383 3082 0
2  Protein   ATP-DEPENDENT RNA HELICASE SUB2  B 383 3082 0
3  Protein   ATP-DEPENDENT RNA HELICASE SUB2  C 381 3071 0
4  Protein   RNA ANNEALING PROTEIN YRA1  G 17 141 0
5  Protein   RNA ANNEALING PROTEIN YRA1  H 17 141 0
6  Protein   RNA ANNEALING PROTEIN YRA1  I 15 127 0
7  RNA    D 6 120 0
8  RNA    E 6 120 0
9  RNA    F 6 120 0
10  Ligand   ATP-DEPENDENT RNA HELICASE SUB2  A 3 0 32
11  Ligand   ATP-DEPENDENT RNA HELICASE SUB2  B 3 0 32
12  Ligand   ATP-DEPENDENT RNA HELICASE SUB2  C 3 0 32
13 Water     27 0 27
total       1250 10004 123
Proteins
Unit 1 THR62 GLY63 PHE64 LYS65 ASP66 PHE67 LEU68 LEU69 LYS70 PRO71 GLU72 LEU73 SER74 ARG75 ALA76 ILE77 ILE78 ASP79 CYS80 GLY81 PHE82 GLU83 HIS84 PRO85 SER86 GLU87 VAL88 GLN89 GLN90 HIS91 THR92 ILE93 PRO94 GLN95 SER96 ILE97 HIS98 GLY99 THR100 ASP101 VAL102 LEU103 CYS104 GLN105 ALA106 LYS107 SER108 GLY109 LEU110 GLY111 LYS112 THR113 ALA114 VAL115 PHE116 VAL117 LEU118 SER119 THR120 LEU121 GLN122 GLN123 LEU124 ASP125 PRO126 VAL127 PRO128 GLY129 GLU130 VAL131 ALA132 VAL133 VAL134 VAL135 ILE136 CYS137 ASN138 ALA139 ARG140 GLU141 LEU142 ALA143 TYR144 GLN145 ILE146 ARG147 ASN148 GLU149 TYR150 LEU151 ARG152 PHE153 SER154 LYS155 TYR156 MET157 PRO158 ASP159 VAL160 LYS161 THR162 ALA163 VAL164 PHE165 TYR166 GLY167 GLY168 THR169 PRO170 ILE171 SER172 LYS173 ASP174 ALA175 GLU176 LEU177 LEU178 LYS179 ASN180 LYS181 ASP182 THR183 ALA184 PRO185 HIS186 ILE187 VAL188 VAL189 ALA190 THR191 PRO192 GLY193 ARG194 LEU195 LYS196 ALA197 LEU198 VAL199 ARG200 GLU201 LYS202 TYR203 ILE204 ASP205 LEU206 SER207 HIS208 VAL209 LYS210 ASN211 PHE212 VAL213 ILE214 ASP215 GLU216 CYS217 ASP218 LYS219 VAL220 LEU221 GLU222 GLU223 LEU224 ASP225 MET226 ARG227 ARG228 ASP229 VAL230 GLN231 GLU232 ILE233 PHE234 ARG235 ALA236 THR237 PRO238 ARG239 ASP240 LYS241 GLN242 VAL243 MET244 MET245 PHE246 SER247 ALA248 THR249 LEU250 SER251 GLN252 GLU253 ILE254 ARG255 PRO256 ILE257 CYS258 ARG259 ARG260 PHE261 LEU262 GLN263 ASN264 PRO265 LEU266 GLU267 ILE268 PHE269 VAL270 ASP271 ASP272 GLU273 ALA274 LYS275 LEU276 THR277 LEU278 HIS279 GLY280 LEU281 GLN282 GLN283 TYR284 TYR285 ILE286 LYS287 LEU288 GLU289 GLU290 ARG291 GLU292 LYS293 ASN294 ARG295 LYS296 LEU297 ALA298 GLN299 LEU300 LEU301 ASP302 ASP303 LEU304 GLU305 PHE306 ASN307 GLN308 VAL309 ILE310 ILE311 PHE312 VAL313 LYS314 SER315 THR316 THR317 ARG318 ALA319 ASN320 GLU321 LEU322 THR323 LYS324 LEU325 LEU326 ASN327 ALA328 SER329 ASN330 PHE331 PRO332 ALA333 ILE334 THR335 VAL336 HIS337 GLY338 HIS339 MET340 LYS341 GLN342 GLU343 GLU344 ARG345 ILE346 ALA347 ARG348 TYR349 LYS350 ALA351 PHE352 LYS353 ASP354 PHE355 GLU356 LYS357 ARG358 ILE359 CYS360 VAL361 SER362 THR363 ASP364 VAL365 PHE366 GLY367 ARG368 GLY369 ILE370 ASP371 ILE372 GLU373 ARG374 ILE375 ASN376 LEU377 ALA378 ILE379 ASN380 TYR381 ASP382 LEU383 THR384 ASN385 GLU386 ALA387 ASP388 GLN389 TYR390 LEU391 HIS392 ARG393 VAL394 GLY395 ARG396 ALA397 GLY398 ARG399 PHE400 GLY401 THR402 LYS403 GLY404 LEU405 ALA406 ILE407 SER408 PHE409 VAL410 SER411 SER412 LYS413 GLU414 ASP415 GLU416 GLU417 VAL418 LEU419 ALA420 LYS421 ILE422 GLN423 GLU424 ARG425 PHE426 ASP427 VAL428 LYS429 ILE430 ALA431 GLU432 PHE433 PRO434 GLU435 GLU436 GLY437 ILE438 ASP439 PRO440 SER441 THR442 TYR443 LEU444
Unit 2 THR62 GLY63 PHE64 LYS65 ASP66 PHE67 LEU68 LEU69 LYS70 PRO71 GLU72 LEU73 SER74 ARG75 ALA76 ILE77 ILE78 ASP79 CYS80 GLY81 PHE82 GLU83 HIS84 PRO85 SER86 GLU87 VAL88 GLN89 GLN90 HIS91 THR92 ILE93 PRO94 GLN95 SER96 ILE97 HIS98 GLY99 THR100 ASP101 VAL102 LEU103 CYS104 GLN105 ALA106 LYS107 SER108 GLY109 LEU110 GLY111 LYS112 THR113 ALA114 VAL115 PHE116 VAL117 LEU118 SER119 THR120 LEU121 GLN122 GLN123 LEU124 ASP125 PRO126 VAL127 PRO128 GLY129 GLU130 VAL131 ALA132 VAL133 VAL134 VAL135 ILE136 CYS137 ASN138 ALA139 ARG140 GLU141 LEU142 ALA143 TYR144 GLN145 ILE146 ARG147 ASN148 GLU149 TYR150 LEU151 ARG152 PHE153 SER154 LYS155 TYR156 MET157 PRO158 ASP159 VAL160 LYS161 THR162 ALA163 VAL164 PHE165 TYR166 GLY167 GLY168 THR169 PRO170 ILE171 SER172 LYS173 ASP174 ALA175 GLU176 LEU177 LEU178 LYS179 ASN180 LYS181 ASP182 THR183 ALA184 PRO185 HIS186 ILE187 VAL188 VAL189 ALA190 THR191 PRO192 GLY193 ARG194 LEU195 LYS196 ALA197 LEU198 VAL199 ARG200 GLU201 LYS202 TYR203 ILE204 ASP205 LEU206 SER207 HIS208 VAL209 LYS210 ASN211 PHE212 VAL213 ILE214 ASP215 GLU216 CYS217 ASP218 LYS219 VAL220 LEU221 GLU222 GLU223 LEU224 ASP225 MET226 ARG227 ARG228 ASP229 VAL230 GLN231 GLU232 ILE233 PHE234 ARG235 ALA236 THR237 PRO238 ARG239 ASP240 LYS241 GLN242 VAL243 MET244 MET245 PHE246 SER247 ALA248 THR249 LEU250 SER251 GLN252 GLU253 ILE254 ARG255 PRO256 ILE257 CYS258 ARG259 ARG260 PHE261 LEU262 GLN263 ASN264 PRO265 LEU266 GLU267 ILE268 PHE269 VAL270 ASP271 ASP272 GLU273 ALA274 LYS275 LEU276 THR277 LEU278 HIS279 GLY280 LEU281 GLN282 GLN283 TYR284 TYR285 ILE286 LYS287 LEU288 GLU289 GLU290 ARG291 GLU292 LYS293 ASN294 ARG295 LYS296 LEU297 ALA298 GLN299 LEU300 LEU301 ASP302 ASP303 LEU304 GLU305 PHE306 ASN307 GLN308 VAL309 ILE310 ILE311 PHE312 VAL313 LYS314 SER315 THR316 THR317 ARG318 ALA319 ASN320 GLU321 LEU322 THR323 LYS324 LEU325 LEU326 ASN327 ALA328 SER329 ASN330 PHE331 PRO332 ALA333 ILE334 THR335 VAL336 HIS337 GLY338 HIS339 MET340 LYS341 GLN342 GLU343 GLU344 ARG345 ILE346 ALA347 ARG348 TYR349 LYS350 ALA351 PHE352 LYS353 ASP354 PHE355 GLU356 LYS357 ARG358 ILE359 CYS360 VAL361 SER362 THR363 ASP364 VAL365 PHE366 GLY367 ARG368 GLY369 ILE370 ASP371 ILE372 GLU373 ARG374 ILE375 ASN376 LEU377 ALA378 ILE379 ASN380 TYR381 ASP382 LEU383 THR384 ASN385 GLU386 ALA387 ASP388 GLN389 TYR390 LEU391 HIS392 ARG393 VAL394 GLY395 ARG396 ALA397 GLY398 ARG399 PHE400 GLY401 THR402 LYS403 GLY404 LEU405 ALA406 ILE407 SER408 PHE409 VAL410 SER411 SER412 LYS413 GLU414 ASP415 GLU416 GLU417 VAL418 LEU419 ALA420 LYS421 ILE422 GLN423 GLU424 ARG425 PHE426 ASP427 VAL428 LYS429 ILE430 ALA431 GLU432 PHE433 PRO434 GLU435 GLU436 GLY437 ILE438 ASP439 PRO440 SER441 THR442 TYR443 LEU444
Unit 3 PHE64 LYS65 ASP66 PHE67 LEU68 LEU69 LYS70 PRO71 GLU72 LEU73 SER74 ARG75 ALA76 ILE77 ILE78 ASP79 CYS80 GLY81 PHE82 GLU83 HIS84 PRO85 SER86 GLU87 VAL88 GLN89 GLN90 HIS91 THR92 ILE93 PRO94 GLN95 SER96 ILE97 HIS98 GLY99 THR100 ASP101 VAL102 LEU103 CYS104 GLN105 ALA106 LYS107 SER108 GLY109 LEU110 GLY111 LYS112 THR113 ALA114 VAL115 PHE116 VAL117 LEU118 SER119 THR120 LEU121 GLN122 GLN123 LEU124 ASP125 PRO126 VAL127 PRO128 GLY129 GLU130 VAL131 ALA132 VAL133 VAL134 VAL135 ILE136 CYS137 ASN138 ALA139 ARG140 GLU141 LEU142 ALA143 TYR144 GLN145 ILE146 ARG147 ASN148 GLU149 TYR150 LEU151 ARG152 PHE153 SER154 LYS155 TYR156 MET157 PRO158 ASP159 VAL160 LYS161 THR162 ALA163 VAL164 PHE165 TYR166 GLY167 GLY168 THR169 PRO170 ILE171 SER172 LYS173 ASP174 ALA175 GLU176 LEU177 LEU178 LYS179 ASN180 LYS181 ASP182 THR183 ALA184 PRO185 HIS186 ILE187 VAL188 VAL189 ALA190 THR191 PRO192 GLY193 ARG194 LEU195 LYS196 ALA197 LEU198 VAL199 ARG200 GLU201 LYS202 TYR203 ILE204 ASP205 LEU206 SER207 HIS208 VAL209 LYS210 ASN211 PHE212 VAL213 ILE214 ASP215 GLU216 CYS217 ASP218 LYS219 VAL220 LEU221 GLU222 GLU223 LEU224 ASP225 MET226 ARG227 ARG228 ASP229 VAL230 GLN231 GLU232 ILE233 PHE234 ARG235 ALA236 THR237 PRO238 ARG239 ASP240 LYS241 GLN242 VAL243 MET244 MET245 PHE246 SER247 ALA248 THR249 LEU250 SER251 GLN252 GLU253 ILE254 ARG255 PRO256 ILE257 CYS258 ARG259 ARG260 PHE261 LEU262 GLN263 ASN264 PRO265 LEU266 GLU267 ILE268 PHE269 VAL270 ASP271 ASP272 GLU273 ALA274 LYS275 LEU276 THR277 LEU278 HIS279 GLY280 LEU281 GLN282 GLN283 TYR284 TYR285 ILE286 LYS287 LEU288 GLU289 GLU290 ARG291 GLU292 LYS293 ASN294 ARG295 LYS296 LEU297 ALA298 GLN299 LEU300 LEU301 ASP302 ASP303 LEU304 GLU305 PHE306 ASN307 GLN308 VAL309 ILE310 ILE311 PHE312 VAL313 LYS314 SER315 THR316 THR317 ARG318 ALA319 ASN320 GLU321 LEU322 THR323 LYS324 LEU325 LEU326 ASN327 ALA328 SER329 ASN330 PHE331 PRO332 ALA333 ILE334 THR335 VAL336 HIS337 GLY338 HIS339 MET340 LYS341 GLN342 GLU343 GLU344 ARG345 ILE346 ALA347 ARG348 TYR349 LYS350 ALA351 PHE352 LYS353 ASP354 PHE355 GLU356 LYS357 ARG358 ILE359 CYS360 VAL361 SER362 THR363 ASP364 VAL365 PHE366 GLY367 ARG368 GLY369 ILE370 ASP371 ILE372 GLU373 ARG374 ILE375 ASN376 LEU377 ALA378 ILE379 ASN380 TYR381 ASP382 LEU383 THR384 ASN385 GLU386 ALA387 ASP388 GLN389 TYR390 LEU391 HIS392 ARG393 VAL394 GLY395 ARG396 ALA397 GLY398 ARG399 PHE400 GLY401 THR402 LYS403 GLY404 LEU405 ALA406 ILE407 SER408 PHE409 VAL410 SER411 SER412 LYS413 GLU414 ASP415 GLU416 GLU417 VAL418 LEU419 ALA420 LYS421 ILE422 GLN423 GLU424 ARG425 PHE426 ASP427 VAL428 LYS429 ILE430 ALA431 GLU432 PHE433 PRO434 GLU435 GLU436 GLY437 ILE438 ASP439 PRO440 SER441 THR442 TYR443 LEU444
Unit 4 ALA208 LYS209 LYS210 SER211 LEU212 GLU213 ASP214 LEU215 ASP216 LYS217 GLU218 MET219 ALA220 ASP221 TYR222 PHE223 GLU224
Unit 5 ALA208 LYS209 LYS210 SER211 LEU212 GLU213 ASP214 LEU215 ASP216 LYS217 GLU218 MET219 ALA220 ASP221 TYR222 PHE223 GLU224
Unit 6 LYS210 SER211 LEU212 GLU213 ASP214 LEU215 ASP216 LYS217 GLU218 MET219 ALA220 ASP221 TYR222 PHE223 GLU224
Nucleic acids
Unit 7 U1 U2 U3 U4 U5 U6
Unit 8 U1 U2 U3 U4 U5 U6
Unit 9 U1 U2 U3 U4 U5 U6
Ligands
Unit 10 ADP1000 BEF1001 MG1002
Unit 11 ADP2000 BEF2001 MG2002
Unit 12 ADP3000 BEF3001 MG3002
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany