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Title | PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF JMJ INITIAL REFINEMENT WITH NO LIGAND MODELLED (STRUCTURE 89) | |
Keywords | PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, JMJ DOMAIN, EPIGENETICS, OXIDOREDUCTASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5PK4 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | LYSINE-SPECIFIC DEMETHYLASE 4D | A | 331 | 2664 | 0 |
2 | Ligand | LYSINE-SPECIFIC DEMETHYLASE 4D | A | 15 | 0 | 60 |
3 | Water | 441 | 0 | 441 | ||
total | 787 | 2664 | 501 |
Unit 1 | ALA11 GLN12 ASN13 PRO14 ASN15 CYS16 ASN17 ILE18 MET19 ILE20 PHE21 HIS22 PRO23 THR24 LYS25 GLU26 GLU27 PHE28 ASN29 ASP30 PHE31 ASP32 LYS33 TYR34 ILE35 ALA36 TYR37 MET38 GLU39 SER40 GLN41 GLY42 ALA43 HIS44 ARG45 ALA46 GLY47 LEU48 ALA49 LYS50 ILE51 ILE52 PRO53 PRO54 LYS55 GLU56 TRP57 LYS58 ALA59 ARG60 GLU61 THR62 TYR63 ASP64 ASN65 ILE66 SER67 GLU68 ILE69 LEU70 ILE71 ALA72 THR73 PRO74 LEU75 GLN76 GLN77 VAL78 ALA79 SER80 GLY81 ARG82 ALA83 GLY84 VAL85 PHE86 THR87 GLN88 TYR89 HIS90 LYS91 LYS92 LYS93 LYS94 ALA95 MET96 THR97 VAL98 GLY99 GLU100 TYR101 ARG102 HIS103 LEU104 ALA105 ASN106 SER107 LYS108 LYS109 TYR110 GLN111 THR112 PRO113 PRO114 HIS115 GLN116 ASN117 PHE118 GLU119 ASP120 LEU121 GLU122 ARG123 LYS124 TYR125 TRP126 LYS127 ASN128 ARG129 ILE130 TYR131 ASN132 SER133 PRO134 ILE135 TYR136 GLY137 ALA138 ASP139 ILE140 SER141 GLY142 SER143 LEU144 PHE145 ASP146 GLU147 ASN148 THR149 LYS150 GLN151 TRP152 ASN153 LEU154 GLY155 HIS156 LEU157 GLY158 THR159 ILE160 GLN161 ASP162 LEU163 LEU164 GLU165 LYS166 GLU167 CYS168 GLY169 VAL170 VAL171 ILE172 GLU173 GLY174 VAL175 ASN176 THR177 PRO178 TYR179 LEU180 TYR181 PHE182 GLY183 MET184 TRP185 LYS186 THR187 THR188 PHE189 ALA190 TRP191 HIS192 THR193 GLU194 ASP195 MET196 ASP197 LEU198 TYR199 SER200 ILE201 ASN202 TYR203 LEU204 HIS205 LEU206 GLY207 GLU208 PRO209 LYS210 THR211 TRP212 TYR213 VAL214 VAL215 PRO216 PRO217 GLU218 HIS219 GLY220 GLN221 ARG222 LEU223 GLU224 ARG225 LEU226 ALA227 ARG228 GLU229 LEU230 PHE231 PRO232 GLY233 SER234 SER235 ARG236 GLY237 CYS238 GLY239 ALA240 PHE241 LEU242 ARG243 HIS244 LYS245 VAL246 ALA247 LEU248 ILE249 SER250 PRO251 THR252 VAL253 LEU254 LYS255 GLU256 ASN257 GLY258 ILE259 PRO260 PHE261 ASN262 ARG263 ILE264 THR265 GLN266 GLU267 ALA268 GLY269 GLU270 PHE271 MET272 VAL273 THR274 PHE275 PRO276 TYR277 GLY278 TYR279 HIS280 ALA281 GLY282 PHE283 ASN284 HIS285 GLY286 PHE287 ASN288 CYS289 ALA290 GLU291 ALA292 ILE293 ASN294 PHE295 ALA296 THR297 PRO298 ARG299 TRP300 ILE301 ASP302 TYR303 GLY304 LYS305 MET306 ALA307 SER308 GLN309 CYS310 SER311 CYS312 GLY313 GLU314 ALA315 ARG316 VAL317 THR318 PHE319 SER320 MET321 ASP322 ALA323 PHE324 VAL325 ARG326 ILE327 LEU328 GLN329 PRO330 GLU331 ARG332 TYR333 ASP334 LEU335 TRP336 LYS337 ARG338 GLY339 GLN340 ASP341 |
Unit 2 | ZN401 NI402 MG403 OGA404 EDO405 EDO406 EDO407 EDO408 EDO409 EDO410 EDO411 EDO412 SO4413 SO4414 SO4415 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |