Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title LOCALISED RECONSTRUCTION OF ALPHA V BETA 6 BOUND TO FOOT AND DISEASE VIRUS O PANASIA - POSE A PRIME.
Keywords FOOT AND MOUTH DISEASE VIRUS, FMDV, VIRUS, OPANASIA, VIRUS-R COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5NER     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   O PANASIA VP1  1 210 1638 0
2  Protein   O PANASIA VP2  2 214 1677 0
3  Protein   O PANASIA VP3  3 220 1686 0
4  Protein   O PANASIA VP4  4 47 354 0
5  Protein   INTEGRIN ALPHA-V  A 589 4564 0
6  Protein   INTEGRIN BETA-6  B 448 3438 0
7  Ligand    C 2 0 22
8  Ligand    D 3 0 40
9  Ligand    E 2 0 25
10  Ligand    F 4 0 50
11  Ligand    G 4 0 52
12  Ligand   O PANASIA VP1  1 2 0 22
13  Ligand   O PANASIA VP3  3 1 0 11
14  Ligand   INTEGRIN ALPHA-V  A 6 0 32
15  Ligand   INTEGRIN BETA-6  B 2 0 28
total       1754 13357 282

Proteins
Unit 1 THR1 THR2 SER3 ALA4 GLY5 GLU6 SER7 ALA8 ASP9 PRO10 VAL11 THR12 ALA13 THR14 VAL15 GLU16 ASN17 TYR18 GLY19 GLY20 GLU21 THR22 GLN23 VAL24 GLN25 ARG26 ARG27 GLN28 HIS29 THR30 ASP31 VAL32 SER33 PHE34 ILE35 LEU36 ASP37 ARG38 PHE39 VAL40 LYS41 VAL42 THR43 PRO44 LYS45 ASP46 GLN47 ILE48 ASN49 VAL50 LEU51 ASP52 LEU53 MET54 GLN55 THR56 PRO57 ALA58 HIS59 THR60 LEU61 VAL62 GLY63 ALA64 LEU65 LEU66 ARG67 THR68 ALA69 THR70 TYR71 TYR72 PHE73 ALA74 ASP75 LEU76 GLU77 VAL78 ALA79 VAL80 LYS81 HIS82 GLU83 GLY84 ASN85 LEU86 THR87 TRP88 VAL89 PRO90 ASN91 GLY92 ALA93 PRO94 GLU95 THR96 ALA97 LEU98 ASP99 ASN100 THR101 THR102 ASN103 PRO104 THR105 ALA106 TYR107 HIS108 LYS109 ALA110 PRO111 LEU112 THR113 ARG114 LEU115 ALA116 LEU117 PRO118 TYR119 THR120 ALA121 PRO122 HIS123 ARG124 VAL125 LEU126 ALA127 THR128 VAL129 TYR130 ASN131 GLY132 ASN133 CYS134 LYS135 TYR136 GLY137 GLU138 SER139 HIS140 THR141 THR142 ASN143 VAL144 ARG145 GLY146 ASP147 LEU148 GLN149 VAL150 LEU151 ALA152 GLN153 LYS154 VAL155 ALA156 ARG157 THR158 LEU159 PRO160 THR161 SER162 PHE163 ASN164 TYR165 GLY166 ALA167 ILE168 LYS169 ALA170 THR171 ARG172 VAL173 THR174 GLU175 LEU176 LEU177 TYR178 ARG179 MET180 LYS181 ARG182 ALA183 GLU184 THR185 TYR186 CYS187 PRO188 ARG189 PRO190 LEU191 LEU192 ALA193 ILE194 HIS195 PRO196 SER197 GLU198 ALA199 ARG200 HIS201 LYS202 GLN203 LYS204 ILE205 VAL206 ALA207 PRO208 VAL209 LYS210
Unit 2 GLU5 GLU6 THR7 THR8 LEU9 LEU10 GLU11 ASP12 ARG13 ILE14 LEU15 THR16 THR17 ARG18 ASN19 GLY20 HIS21 THR22 THR23 SER24 THR25 THR26 GLN27 SER28 SER29 VAL30 GLY31 VAL32 THR33 TYR34 GLY35 TYR36 ALA37 THR38 THR39 GLU40 ASP41 PHE42 VAL43 SER44 GLY45 PRO46 ASN47 THR48 SER49 GLY50 LEU51 GLU52 THR53 ARG54 VAL55 VAL56 GLN57 ALA58 GLU59 ARG60 PHE61 PHE62 LYS63 THR64 HIS65 LEU66 PHE67 ASP68 TRP69 VAL70 THR71 SER72 ASP73 SER74 PHE75 GLY76 ARG77 CYS78 HIS79 LEU80 LEU81 GLU82 LEU83 PRO84 THR85 ASP86 HIS87 LYS88 GLY89 VAL90 TYR91 GLY92 SER93 LEU94 THR95 ASP96 SER97 TYR98 ALA99 TYR100 MET101 ARG102 ASN103 GLY104 TRP105 ASP106 VAL107 GLU108 VAL109 THR110 ALA111 VAL112 GLY113 ASN114 GLN115 PHE116 ASN117 GLY118 GLY119 CYS120 LEU121 LEU122 VAL123 ALA124 MET125 VAL126 PRO127 GLU128 LEU129 CYS130 SER131 ILE132 ASN133 LYS134 ARG135 GLU136 LEU137 TYR138 GLN139 LEU140 THR141 LEU142 PHE143 PRO144 HIS145 GLN146 PHE147 ILE148 ASN149 PRO150 ARG151 THR152 ASN153 MET154 THR155 ALA156 HIS157 ILE158 THR159 VAL160 PRO161 PHE162 VAL163 GLY164 VAL165 ASN166 ARG167 TYR168 ASP169 GLN170 TYR171 LYS172 VAL173 HIS174 LYS175 PRO176 TRP177 THR178 LEU179 VAL180 VAL181 MET182 VAL183 VAL184 ALA185 PRO186 LEU187 THR188 VAL189 ASN190 THR191 GLU192 GLY193 ALA194 PRO195 GLN196 ILE197 LYS198 VAL199 TYR200 ALA201 ASN202 ILE203 ALA204 PRO205 THR206 ASN207 VAL208 HIS209 VAL210 ALA211 GLY212 GLU213 PHE214 PRO215 SER216 LYS217 GLU218
Unit 3 GLY1 ILE2 PHE3 PRO4 VAL5 ALA6 CYS7 SER8 ASP9 GLY10 TYR11 GLY12 GLY13 LEU14 VAL15 THR16 THR17 ASP18 PRO19 LYS20 THR21 ALA22 ASP23 PRO24 ALA25 TYR26 GLY27 LYS28 VAL29 PHE30 ASN31 PRO32 PRO33 ARG34 ASN35 MET36 LEU37 PRO38 GLY39 ARG40 PHE41 THR42 ASN43 PHE44 LEU45 ASP46 VAL47 ALA48 GLU49 ALA50 CYS51 PRO52 THR53 PHE54 LEU55 ARG56 PHE57 GLU58 GLY59 ASP60 VAL61 PRO62 TYR63 VAL64 THR65 THR66 LYS67 THR68 ASP69 SER70 ASP71 ARG72 ILE73 LEU74 ALA75 GLN76 PHE77 ASP78 LEU79 SER80 LEU81 ALA82 ALA83 LYS84 HIS85 MET86 SER87 ASN88 THR89 PHE90 LEU91 ALA92 GLY93 LEU94 ALA95 GLN96 TYR97 TYR98 THR99 GLN100 TYR101 SER102 GLY103 THR104 ILE105 ASN106 LEU107 HIS108 PHE109 MET110 PHE111 THR112 GLY113 PRO114 THR115 ASP116 ALA117 LYS118 ALA119 ARG120 TYR121 MET122 ILE123 ALA124 TYR125 ALA126 PRO127 PRO128 GLY129 MET130 GLU131 PRO132 PRO133 LYS134 THR135 PRO136 GLU137 ALA138 ALA139 ALA140 HIS141 CYS142 ILE143 HIS144 ALA145 GLU146 TRP147 ASP148 THR149 GLY150 LEU151 ASN152 SER153 LYS154 PHE155 THR156 PHE157 SER158 ILE159 PRO160 TYR161 LEU162 SER163 ALA164 ALA165 ASP166 TYR167 ALA168 TYR169 THR170 ALA171 SER172 ASP173 THR174 ALA175 GLU176 THR177 THR178 ASN179 VAL180 GLN181 GLY182 TRP183 VAL184 CYS185 LEU186 PHE187 GLN188 ILE189 THR190 HIS191 GLY192 LYS193 ALA194 ASP195 GLY196 ASP197 ALA198 LEU199 VAL200 VAL201 LEU202 ALA203 SER204 ALA205 GLY206 LYS207 ASP208 PHE209 GLU210 LEU211 ARG212 LEU213 PRO214 VAL215 ASP216 ALA217 ARG218 THR219 GLN220
Unit 4 SER15 GLY16 ASN17 THR18 GLY19 SER20 ILE21 ILE22 ASN23 ASN24 TYR25 TYR26 MET27 GLN28 GLN29 TYR30 GLN31 ASN32 SER33 MET34 ASP35 THR36 GLN37 LEU38 GLY39 ASP40 ASN65 ASP66 TRP67 PHE68 SER69 LYS70 LEU71 ALA72 SER73 SER74 ALA75 PHE76 SER77 GLY78 LEU79 PHE80 GLY81 ALA82 LEU83 LEU84 ALA85
Unit 5 PHE1 ASN2 LEU3 ASP4 VAL5 ASP6 SER7 PRO8 ALA9 GLU10 TYR11 SER12 GLY13 PRO14 GLU15 GLY16 SER17 TYR18 PHE19 GLY20 PHE21 ALA22 VAL23 ASP24 PHE25 PHE26 VAL27 PRO28 SER29 SER32 ARG33 MET34 PHE35 LEU36 LEU37 VAL38 GLY39 ALA40 PRO41 LYS42 ALA43 ASN44 THR45 THR46 GLN47 PRO48 GLY49 ILE50 VAL51 GLU52 GLY53 GLY54 GLN55 VAL56 LEU57 LYS58 CYS59 ASP60 TRP61 SER62 SER63 THR64 ARG65 ARG66 CYS67 GLN68 PRO69 ILE70 GLU71 PHE72 ASP73 ALA74 THR75 GLY76 ASN77 ARG78 ASP79 TYR80 ALA81 LYS82 ASP83 ASP84 PRO85 LEU86 GLU87 PHE88 LYS89 SER90 HIS91 GLN92 TRP93 PHE94 GLY95 ALA96 SER97 VAL98 ARG99 SER100 LYS101 GLN102 ASP103 LYS104 ILE105 LEU106 ALA107 CYS108 ALA109 PRO110 LEU111 TYR112 HIS113 TRP114 ARG115 THR116 GLU117 MET118 LYS119 GLN120 GLU121 ARG122 GLU123 PRO124 VAL125 GLY126 THR127 CYS128 PHE129 LEU130 GLN131 ASP132 GLY133 THR134 LYS135 THR136 VAL137 GLU138 TYR139 ALA140 PRO141 CYS142 ARG143 SER144 GLN145 ASP146 ILE147 ASP148 ALA149 ASP150 GLY151 GLN152 GLY153 PHE154 CYS155 GLN156 GLY157 GLY158 PHE159 SER160 ILE161 ASP162 PHE163 THR164 LYS165 ALA166 ASP167 ARG168 VAL169 LEU170 LEU171 GLY172 GLY173 PRO174 GLY175 SER176 PHE177 TYR178 TRP179 GLN180 GLY181 GLN182 LEU183 ILE184 SER185 ASP186 GLN187 VAL188 ALA189 GLU190 ILE191 VAL192 SER193 LYS194 TYR195 ASP196 PRO197 ASN198 VAL199 TYR200 SER201 ILE202 LYS203 TYR204 ASN205 ASN206 GLN207 LEU208 ALA209 THR210 ARG211 THR212 ALA213 GLN214 ALA215 ILE216 PHE217 ASP218 ASP219 SER220 TYR221 LEU222 GLY223 TYR224 SER225 VAL226 ALA227 VAL228 GLY229 ASP230 PHE231 ASN232 GLY233 ASP234 GLY235 ILE236 ASP237 ASP238 PHE239 VAL240 SER241 GLY242 VAL243 PRO244 ARG245 ALA246 ALA247 ARG248 THR249 LEU250 GLY251 MET252 VAL253 TYR254 ILE255 TYR256 ASP257 GLY258 LYS259 ASN260 MET261 SER262 SER263 TYR265 ASN266 PHE267 THR268 GLY269 GLU270 GLN271 MET272 ALA273 ALA274 TYR275 PHE276 GLY277 PHE278 SER279 VAL280 ALA281 ALA282 THR283 ASP284 ILE285 ASN286 GLY287 ASP288 ASP289 TYR290 ALA291 ASP292 VAL293 PHE294 ILE295 GLY296 ALA297 PRO298 LEU299 PHE300 MET301 ASP302 ARG303 GLY304 SER305 ASP306 GLY307 LYS308 LEU309 GLN310 GLU311 VAL312 GLY313 GLN314 VAL315 SER316 VAL317 SER318 LEU319 GLN320 ARG321 ALA322 SER323 GLY324 ASP325 PHE326 GLN327 THR328 THR329 LYS330 LEU331 ASN332 GLY333 PHE334 GLU335 VAL336 PHE337 ALA338 ARG339 PHE340 GLY341 SER342 ALA343 ILE344 ALA345 PRO346 LEU347 GLY348 ASP349 LEU350 ASP351 GLN352 ASP353 GLY354 PHE355 ASN356 ASP357 ILE358 ALA359 ILE360 ALA361 ALA362 PRO363 TYR364 GLY365 GLY366 GLU367 ASP368 LYS369 LYS370 GLY371 ILE372 VAL373 TYR374 ILE375 PHE376 ASN377 GLY378 ARG379 SER380 THR381 GLY382 LEU383 ASN384 ALA385 VAL386 PRO387 SER388 GLN389 ILE390 LEU391 GLU392 GLY393 GLN394 TRP395 ALA396 ALA397 ARG398 SER399 CYS400 PRO401 PRO402 SER403 PHE404 GLY405 TYR406 SER407 MET408 LYS409 GLY410 ALA411 THR412 ASP413 ILE414 ASP415 LYS416 ASN417 GLY418 TYR419 PRO420 ASP421 LEU422 ILE423 VAL424 GLY425 ALA426 PHE427 GLY428 VAL429 ASP430 ARG431 ALA432 ILE433 LEU434 TYR435 ARG436 ALA437 ARG438 PRO439 VAL440 ILE441 THR442 VAL443 ASN444 ALA445 GLY446 LEU447 GLU448 VAL449 TYR450 PRO451 SER452 ILE453 LEU454 ASN455 GLN456 ASP457 ASN458 LYS459 THR460 CYS461 SER462 LEU463 PRO464 GLY465 THR466 ALA467 LEU468 LYS469 VAL470 SER471 CYS472 PHE473 ASN474 VAL475 ARG476 PHE477 CYS478 LEU479 LYS480 ALA481 ASP482 GLY483 LYS484 GLY485 VAL486 LEU487 PRO488 ARG489 LYS490 LEU491 ASN492 PHE493 GLN494 VAL495 GLU496 LEU497 LEU498 LEU499 ASP500 LYS501 LEU502 LYS503 GLY506 ALA507 ILE508 ARG509 ARG510 ALA511 LEU512 PHE513 LEU514 TYR515 SER516 ARG517 SER518 PRO519 SER520 HIS521 SER522 LYS523 ASN524 MET525 THR526 ILE527 SER528 ARG529 GLY530 GLY531 LEU532 MET533 GLN534 CYS535 GLU536 GLU537 LEU538 ILE539 ALA540 TYR541 LEU542 ARG543 ASP544 GLU545 SER546 GLU547 PHE548 ARG549 ASP550 LYS551 LEU552 THR553 PRO554 ILE555 THR556 ILE557 PHE558 MET559 GLU560 TYR561 ARG562 LEU563 ASP564 TYR565 ARG566 THR567 ALA568 ALA569 ASP570 THR571 THR572 GLY573 LEU574 GLN575 PRO576 ILE577 LEU578 ASN579 GLN580 PHE581 THR582 PRO583 ALA584 ASN585 ILE586 SER587 ARG588 GLN589 ALA590 HIS591 ILE592 LEU593 LEU594
Unit 6 GLY5 CYS6 ALA7 LEU8 GLY9 GLY10 THR13 CYS14 GLU15 ASP16 CYS17 LEU18 LEU19 ILE20 GLY21 PRO22 GLN23 CYS24 ALA25 TRP26 CYS27 ALA28 ARG38 CYS39 ASP40 THR41 PRO42 CYS50 GLN51 LEU52 ASN53 PHE54 ILE55 GLU56 ASN57 PRO58 VAL59 SER60 GLN61 VAL62 GLU63 ILE64 LEU65 LYS66 ASN67 LYS68 PRO69 LEU70 SER71 VAL72 GLY73 ARG74 GLN75 LYS76 ASN77 SER78 SER79 ASP80 ILE81 VAL82 GLN83 ILE84 ALA85 PRO86 GLN87 SER88 LEU89 ILE90 LEU91 LYS92 LEU93 ARG94 PRO95 GLY96 GLY97 ALA98 GLN99 THR100 LEU101 GLN102 VAL103 HIS104 VAL105 ARG106 GLN107 THR108 GLU109 ASP110 TYR111 PRO112 VAL113 ASP114 LEU115 TYR116 TYR117 LEU118 MET119 ASP120 LEU121 SER122 ALA123 SER124 MET125 ASP126 ASP127 ASP128 LEU129 ASN130 THR131 ILE132 LYS133 GLU134 LEU135 GLY136 SER137 ARG138 LEU139 SER140 LYS141 GLU142 MET143 SER144 LYS145 LEU146 THR147 SER148 ASN149 PHE150 ARG151 LEU152 GLY153 PHE154 GLY155 SER156 PHE157 VAL158 GLU159 LYS160 PRO161 VAL162 SER163 PRO164 PHE165 VAL166 LYS167 THR168 THR169 PRO170 GLU171 GLU172 ILE173 ALA174 ASN175 PRO176 CYS177 SER178 SER179 ILE180 PRO181 TYR182 PHE183 CYS184 LEU185 PRO186 THR187 PHE188 GLY189 PHE190 LYS191 HIS192 ILE193 LEU194 PRO195 LEU196 THR197 ASN198 ASP199 ALA200 GLU201 ARG202 PHE203 ASN204 GLU205 ILE206 VAL207 LYS208 ASN209 GLN210 LYS211 ILE212 SER213 ALA214 ASN215 ILE216 ASP217 THR218 PRO219 GLU220 GLY221 GLY222 PHE223 ASP224 ALA225 ILE226 MET227 GLN228 ALA229 ALA230 VAL231 CYS232 LYS233 GLU234 LYS235 ILE236 GLY237 TRP238 ARG239 ASN240 ASP241 SER242 LEU243 HIS244 LEU245 LEU246 VAL247 PHE248 VAL249 SER250 ASP251 ALA252 ASP253 SER254 HIS255 PHE256 GLY257 MET258 ASP259 SER260 LYS261 LEU262 ALA263 GLY264 ILE265 VAL266 CYS267 PRO268 ASN269 ASP270 GLY271 LEU272 CYS273 HIS274 LEU275 ASP276 SER277 LYS278 ASN279 GLU280 TYR281 SER282 MET283 SER284 THR285 VAL286 LEU287 GLU288 TYR289 PRO290 THR291 ILE292 GLY293 GLN294 LEU295 ILE296 ASP297 LYS298 LEU299 VAL300 GLN301 ASN302 ASN303 VAL304 LEU305 LEU306 ILE307 PHE308 ALA309 VAL310 THR311 GLN312 GLU313 GLN314 VAL315 HIS316 LEU317 TYR318 GLU319 ASN320 TYR321 ALA322 LYS323 LEU324 ILE325 PRO326 GLY327 ALA328 THR329 VAL330 GLY331 LEU332 LEU333 GLN334 LYS335 ASP336 SER337 GLY338 ASN339 ILE340 LEU341 GLN342 LEU343 ILE344 ILE345 SER346 ALA347 TYR348 GLU349 GLU350 LEU351 ARG352 SER353 GLU354 VAL355 GLU356 LEU357 GLU358 VAL359 LEU360 GLY361 ASP362 THR363 GLU364 GLY365 LEU366 ASN367 LEU368 SER369 PHE370 THR371 ALA372 ILE373 CYS374 ASN375 ASN376 GLY377 THR378 LEU379 PHE380 GLN381 HIS382 GLN383 LYS384 LYS385 CYS386 SER387 HIS388 MET389 LYS390 VAL391 GLY392 ASP393 THR394 ALA395 SER396 PHE397 SER398 VAL399 THR400 VAL401 ASN402 ILE403 PRO404 HIS405 CYS406 GLU407 ARG408 ARG409 SER410 ARG411 HIS412 ILE413 ILE414 ILE415 LYS416 PRO417 VAL418 GLY419 LEU420 GLY421 ASP422 ALA423 LEU424 GLU425 LEU426 LEU427 VAL428 SER429 PRO430 GLU431 CYS432 ASN433 CYS434 ASP435 CYS436 GLN437 LYS438 VAL440 GLU441 VAL442 ASN443 SER444 SER445 LYS446 CYS447 HIS448 ASN449 GLY450 ASN451 GLY452 SER453 PHE454 GLN455 CYS456 GLY457 VAL458 CYS459 ALA460 CYS461 HIS462 PRO463 GLY464 HIS465 MET466 GLY467 PRO468 ARG469 CYS470 GLU471

Ligands
Unit 7 MAN1 MAN2
Unit 8 NAG1 NAG2 MAN3
Unit 9 NAG1 MAN2
Unit 10 NAG1 NAG2 MAN3 MAN4
Unit 11 NAG1 NAG2 MAN3 MAN4
Unit 12 MAN301 MAN302
Unit 13 MAN301
Unit 14 NAG604 NAG611 CA616 CA617 CA618 CA619
Unit 15 NAG501 NAG502

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany