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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE MATURE HIV-1 CA HEXAMERIC LATTICE WITH PARAMETERS: TILT=11, TWIST=6
Keywords RETROVIRUS, HIV-1, CAPSID, LATTICE CURVATURE, VIRAL PROTEIN
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5MD4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAPSID PROTEIN P24  A 74 295 0
2  Protein   CAPSID PROTEIN P24  B 74 295 0
3  Protein   CAPSID PROTEIN P24  F 74 295 0
4  Protein   CAPSID PROTEIN P24  W 74 295 0
5  Protein   CAPSID PROTEIN P24  a 147 588 0
6  Protein   CAPSID PROTEIN P24  b 147 588 0
7  Protein   CAPSID PROTEIN P24  f 147 588 0
8  Protein   CAPSID PROTEIN P24  C 74 295 0
9  Protein   CAPSID PROTEIN P24  D 74 295 0
10  Protein   CAPSID PROTEIN P24  E 74 295 0
11  Protein   CAPSID PROTEIN P24  G 74 295 0
12  Protein   CAPSID PROTEIN P24  H 147 588 0
13  Protein   CAPSID PROTEIN P24  I 147 588 0
14  Protein   CAPSID PROTEIN P24  J 147 588 0
total       1474 5888 0
Proteins
Unit 1 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 2 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 3 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 4 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 5 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
Unit 6 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
Unit 7 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
Unit 8 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 9 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 10 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 11 THR148 SER149 ILE150 LEU151 ASP152 ILE153 ARG154 GLN155 GLY156 PRO157 LYS158 GLU159 PRO160 PHE161 ARG162 ASP163 TYR164 VAL165 ASP166 ARG167 PHE168 TYR169 LYS170 THR171 LEU172 ARG173 ALA174 GLU175 GLN176 ALA177 SER178 GLN179 GLU180 VAL181 LYS182 ASN183 TRP184 MET185 THR186 GLU187 THR188 LEU189 LEU190 VAL191 GLN192 ASN193 ALA194 ASN195 PRO196 ASP197 CYS198 LYS199 THR200 ILE201 LEU202 LYS203 ALA204 LEU205 GLY206 PRO207 GLY208 ALA209 THR210 LEU211 GLU212 GLU213 MET214 MET215 THR216 ALA217 CYS218 GLN219 GLY220 VAL221
Unit 12 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
Unit 13 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
Unit 14 PRO1 ILE2 VAL3 GLN4 ASN5 LEU6 GLN7 GLY8 GLN9 MET10 VAL11 HIS12 GLN13 ALA14 ILE15 SER16 PRO17 ARG18 THR19 LEU20 ASN21 ALA22 TRP23 VAL24 LYS25 VAL26 VAL27 GLU28 GLU29 LYS30 ALA31 PHE32 SER33 PRO34 GLU35 VAL36 ILE37 PRO38 MET39 PHE40 SER41 ALA42 LEU43 SER44 GLU45 GLY46 ALA47 THR48 PRO49 GLN50 ASP51 LEU52 ASN53 THR54 MET55 LEU56 ASN57 THR58 VAL59 GLY60 GLY61 HIS62 GLN63 ALA64 ALA65 MET66 GLN67 MET68 LEU69 LYS70 GLU71 THR72 ILE73 ASN74 GLU75 GLU76 ALA77 ALA78 GLU79 TRP80 ASP81 ARG82 LEU83 HIS84 PRO85 VAL86 HIS87 ALA88 GLY89 PRO90 ILE91 ALA92 PRO93 GLY94 GLN95 MET96 ARG97 GLU98 PRO99 ARG100 GLY101 SER102 ASP103 ILE104 ALA105 GLY106 THR107 THR108 SER109 THR110 LEU111 GLN112 GLU113 GLN114 ILE115 GLY116 TRP117 MET118 THR119 HIS120 ASN121 PRO122 PRO123 ILE124 PRO125 VAL126 GLY127 GLU128 ILE129 TYR130 LYS131 ARG132 TRP133 ILE134 ILE135 LEU136 GLY137 LEU138 ASN139 LYS140 ILE141 VAL142 ARG143 MET144 TYR145 SER146 PRO147
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany