5M4G - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF WILD-TYPE HUMAN PROLIDASE WITH MN IONS
• Keywords: PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5M4G	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	XAA-PRO DIPEPTIDASE	A	481	3746	0
2	Protein	XAA-PRO DIPEPTIDASE	B	483	3760	0
3	Ligand	XAA-PRO DIPEPTIDASE	A	6	0	21
4	Ligand	XAA-PRO DIPEPTIDASE	B	7	0	27
5	Water			1141	0	1141
total				2118	7506	1189

Proteins

Unit 1

GLY 6 PRO 7 SER 8 PHE 9 TRP 10 LEU 11 GLY 12 ASN 13 GLU 14 THR 15 LEU 16 LYS 17 VAL 18 PRO 19 LEU 20 ALA 21 LEU 22 PHE 23 ALA 24 LEU 25 ASN 26 ARG 27 GLN 28 ARG 29 LEU 30 CYS 31 GLU 32 ARG 33 LEU 34 ARG 35 LYS 36 ASN 37 PRO 38 ALA 39 VAL 40 GLN 41 ALA 42 GLY 43 SER 44 ILE 45 VAL 46 VAL 47 LEU 48 GLN 49 GLY 50 GLY 51 GLU 52 GLU 53 THR 54 GLN 55 ARG 56 TYR 57 CYS 58 THR 59 ASP 60 THR 61 GLY 62 VAL 63 LEU 64 PHE 65 ARG 66 GLN 67 GLU 68 SER 69 PHE 70 PHE 71 HIS 72 TRP 73 ALA 74 PHE 75 GLY 76 VAL 77 THR 78 GLU 79 PRO 80 GLY 81 CYS 82 TYR 83 GLY 84 VAL 85 ILE 86 ASP 87 VAL 88 ASP 89 THR 90 GLY 91 LYS 92 SER 93 THR 94 LEU 95 PHE 96 VAL 97 PRO 98 ARG 99 LEU 100 PRO 101 ALA 102 SER 103 HIS 104 ALA 105 THR 106 TRP 107 MET 108 GLY 109 LYS 110 ILE 111 HIS 112 SER 113 LYS 114 GLU 115 HIS 116 PHE 117 LYS 118 GLU 119 LYS 120 TYR 121 ALA 122 VAL 123 ASP 124 ASP 125 VAL 126 GLN 127 TYR 128 VAL 129 ASP 130 GLU 131 ILE 132 ALA 133 SER 134 VAL 135 LEU 136 THR 137 SER 138 GLN 139 LYS 140 PRO 141 SER 142 VAL 143 LEU 144 LEU 145 THR 146 LEU 147 ARG 148 GLY 149 VAL 150 ASN 151 THR 152 ASP 153 SER 154 GLY 155 SER 156 VAL 157 CYS 158 ARG 159 GLU 160 ALA 161 SER 162 PHE 163 ASP 164 GLY 165 ILE 166 SER 167 LYS 168 PHE 169 GLU 170 VAL 171 ASN 172 ASN 173 THR 174 ILE 175 LEU 176 HIS 177 PRO 178 GLU 179 ILE 180 VAL 181 GLU 182 CYS 183 ARG 184 VAL 185 PHE 186 LYS 187 THR 188 ASP 189 MET 190 GLU 191 LEU 192 GLU 193 VAL 194 LEU 195 ARG 196 TYR 197 THR 198 ASN 199 LYS 200 ILE 201 SER 202 SER 203 GLU 204 ALA 205 HIS 206 ARG 207 GLU 208 VAL 209 MET 210 LYS 211 ALA 212 VAL 213 LYS 214 VAL 215 GLY 216 MET 217 LYS 218 GLU 219 TYR 220 GLU 221 LEU 222 GLU 223 SER 224 LEU 225 PHE 226 GLU 227 HIS 228 TYR 229 CYS 230 TYR 231 SER 232 ARG 233 GLY 234 GLY 235 MET 236 ARG 237 HIS 238 SER 239 SER 240 TYR 241 THR 242 CYS 243 ILE 244 CYS 245 GLY 246 SER 247 GLY 248 GLU 249 ASN 250 SER 251 ALA 252 VAL 253 LEU 254 HIS 255 TYR 256 GLY 257 HIS 258 ALA 259 GLY 260 ALA 261 PRO 262 ASN 263 ASP 264 ARG 265 THR 266 ILE 267 GLN 268 ASN 269 GLY 270 ASP 271 MET 272 CYS 273 LEU 274 PHE 275 ASP 276 MET 277 GLY 278 GLY 279 GLU 280 TYR 281 TYR 282 CYS 283 PHE 284 ALA 285 SER 286 ASP 287 ILE 288 THR 289 CYS 290 SER 291 PHE 292 PRO 293 ALA 294 ASN 295 GLY 296 LYS 297 PHE 298 THR 299 ALA 300 ASP 301 GLN 302 LYS 303 ALA 304 VAL 305 TYR 306 GLU 307 ALA 308 VAL 309 LEU 310 ARG 311 SER 312 SER 313 ARG 314 ALA 315 VAL 316 MET 317 GLY 318 ALA 319 MET 320 LYS 321 PRO 322 GLY 323 VAL 324 TRP 325 TRP 326 PRO 327 ASP 328 MET 329 HIS 330 ARG 331 LEU 332 ALA 333 ASP 334 ARG 335 ILE 336 HIS 337 LEU 338 GLU 339 GLU 340 LEU 341 ALA 342 HIS 343 MET 344 GLY 345 ILE 346 LEU 347 SER 348 GLY 349 SER 350 VAL 351 ASP 352 ALA 353 MET 354 VAL 355 GLN 356 ALA 357 HIS 358 LEU 359 GLY 360 ALA 361 VAL 362 PHE 363 MET 364 PRO 365 HIS 366 GLY 367 LEU 368 GLY 369 HIS 370 PHE 371 LEU 372 GLY 373 ILE 374 ASP 375 VAL 376 HIS 377 ASP 378 VAL 379 GLY 380 GLY 381 TYR 382 PRO 383 GLU 384 GLY 385 VAL 386 GLU 387 ARG 388 ILE 389 ASP 390 GLU 391 PRO 392 GLY 393 LEU 394 ARG 395 SER 396 LEU 397 ARG 398 THR 399 ALA 400 ARG 401 HIS 402 LEU 403 GLN 404 PRO 405 GLY 406 MET 407 VAL 408 LEU 409 THR 410 VAL 411 GLU 412 PRO 413 GLY 414 ILE 415 TYR 416 PHE 417 ILE 418 ASP 419 HIS 420 LEU 421 LEU 422 ASP 423 GLU 424 ALA 425 LEU 426 ALA 427 ASP 428 PRO 429 ALA 430 ARG 431 ALA 432 SER 433 PHE 434 LEU 435 ASN 436 ARG 437 GLU 438 VAL 439 LEU 440 GLN 441 ARG 442 PHE 443 ARG 444 GLY 445 PHE 446 GLY 447 GLY 448 VAL 449 ARG 450 ILE 451 GLU 452 GLU 453 ASP 454 VAL 455 VAL 456 VAL 457 THR 458 ASP 459 SER 460 GLY 461 ILE 462 GLU 463 LEU 464 LEU 465 THR 466 CYS 467 VAL 468 PRO 469 ARG 470 THR 471 VAL 472 GLU 473 GLU 474 ILE 475 GLU 476 ALA 477 CYS 478 MET 479 ALA 480 GLY 481 CYS 482 ASP 483 LYS 484 ALA 485 PHE 486

Unit 2

GLY 6 PRO 7 SER 8 PHE 9 TRP 10 LEU 11 GLY 12 ASN 13 GLU 14 THR 15 LEU 16 LYS 17 VAL 18 PRO 19 LEU 20 ALA 21 LEU 22 PHE 23 ALA 24 LEU 25 ASN 26 ARG 27 GLN 28 ARG 29 LEU 30 CYS 31 GLU 32 ARG 33 LEU 34 ARG 35 LYS 36 ASN 37 PRO 38 ALA 39 VAL 40 GLN 41 ALA 42 GLY 43 SER 44 ILE 45 VAL 46 VAL 47 LEU 48 GLN 49 GLY 50 GLY 51 GLU 52 GLU 53 THR 54 GLN 55 ARG 56 TYR 57 CYS 58 THR 59 ASP 60 THR 61 GLY 62 VAL 63 LEU 64 PHE 65 ARG 66 GLN 67 GLU 68 SER 69 PHE 70 PHE 71 HIS 72 TRP 73 ALA 74 PHE 75 GLY 76 VAL 77 THR 78 GLU 79 PRO 80 GLY 81 CYS 82 TYR 83 GLY 84 VAL 85 ILE 86 ASP 87 VAL 88 ASP 89 THR 90 GLY 91 LYS 92 SER 93 THR 94 LEU 95 PHE 96 VAL 97 PRO 98 ARG 99 LEU 100 PRO 101 ALA 102 SER 103 HIS 104 ALA 105 THR 106 TRP 107 MET 108 GLY 109 LYS 110 ILE 111 HIS 112 SER 113 LYS 114 GLU 115 HIS 116 PHE 117 LYS 118 GLU 119 LYS 120 TYR 121 ALA 122 VAL 123 ASP 124 ASP 125 VAL 126 GLN 127 TYR 128 VAL 129 ASP 130 GLU 131 ILE 132 ALA 133 SER 134 VAL 135 LEU 136 THR 137 SER 138 GLN 139 LYS 140 PRO 141 SER 142 VAL 143 LEU 144 LEU 145 THR 146 LEU 147 ARG 148 GLY 149 VAL 150 ASN 151 THR 152 ASP 153 SER 154 GLY 155 SER 156 VAL 157 CYS 158 ARG 159 GLU 160 ALA 161 SER 162 PHE 163 ASP 164 GLY 165 ILE 166 SER 167 LYS 168 PHE 169 GLU 170 VAL 171 ASN 172 ASN 173 THR 174 ILE 175 LEU 176 HIS 177 PRO 178 GLU 179 ILE 180 VAL 181 GLU 182 CYS 183 ARG 184 VAL 185 PHE 186 LYS 187 THR 188 ASP 189 MET 190 GLU 191 LEU 192 GLU 193 VAL 194 LEU 195 ARG 196 TYR 197 THR 198 ASN 199 LYS 200 ILE 201 SER 202 SER 203 GLU 204 ALA 205 HIS 206 ARG 207 GLU 208 VAL 209 MET 210 LYS 211 ALA 212 VAL 213 LYS 214 VAL 215 GLY 216 MET 217 LYS 218 GLU 219 TYR 220 GLU 221 LEU 222 GLU 223 SER 224 LEU 225 PHE 226 GLU 227 HIS 228 TYR 229 CYS 230 TYR 231 SER 232 ARG 233 GLY 234 GLY 235 MET 236 ARG 237 HIS 238 SER 239 SER 240 TYR 241 THR 242 CYS 243 ILE 244 CYS 245 GLY 246 SER 247 GLY 248 GLU 249 ASN 250 SER 251 ALA 252 VAL 253 LEU 254 HIS 255 TYR 256 GLY 257 HIS 258 ALA 259 GLY 260 ALA 261 PRO 262 ASN 263 ASP 264 ARG 265 THR 266 ILE 267 GLN 268 ASN 269 GLY 270 ASP 271 MET 272 CYS 273 LEU 274 PHE 275 ASP 276 MET 277 GLY 278 GLY 279 GLU 280 TYR 281 TYR 282 CYS 283 PHE 284 ALA 285 SER 286 ASP 287 ILE 288 THR 289 CYS 290 SER 291 PHE 292 PRO 293 ALA 294 ASN 295 GLY 296 LYS 297 PHE 298 THR 299 ALA 300 ASP 301 GLN 302 LYS 303 ALA 304 VAL 305 TYR 306 GLU 307 ALA 308 VAL 309 LEU 310 ARG 311 SER 312 SER 313 ARG 314 ALA 315 VAL 316 MET 317 GLY 318 ALA 319 MET 320 LYS 321 PRO 322 GLY 323 VAL 324 TRP 325 TRP 326 PRO 327 ASP 328 MET 329 HIS 330 ARG 331 LEU 332 ALA 333 ASP 334 ARG 335 ILE 336 HIS 337 LEU 338 GLU 339 GLU 340 LEU 341 ALA 342 HIS 343 MET 344 GLY 345 ILE 346 LEU 347 SER 348 GLY 349 SER 350 VAL 351 ASP 352 ALA 353 MET 354 VAL 355 GLN 356 ALA 357 HIS 358 LEU 359 GLY 360 ALA 361 VAL 362 PHE 363 MET 364 PRO 365 HIS 366 GLY 367 LEU 368 GLY 369 HIS 370 PHE 371 LEU 372 GLY 373 ILE 374 ASP 375 VAL 376 HIS 377 ASP 378 VAL 379 GLY 380 GLY 381 TYR 382 PRO 383 GLU 384 GLY 385 VAL 386 GLU 387 ARG 388 ILE 389 ASP 390 GLU 391 PRO 392 GLY 393 LEU 394 ARG 395 SER 396 LEU 397 ARG 398 THR 399 ALA 400 ARG 401 HIS 402 LEU 403 GLN 404 PRO 405 GLY 406 MET 407 VAL 408 LEU 409 THR 410 VAL 411 GLU 412 PRO 413 GLY 414 ILE 415 TYR 416 PHE 417 ILE 418 ASP 419 HIS 420 LEU 421 LEU 422 ASP 423 GLU 424 ALA 425 LEU 426 ALA 427 ASP 428 PRO 429 ALA 430 ARG 431 ALA 432 SER 433 PHE 434 LEU 435 ASN 436 ARG 437 GLU 438 VAL 439 LEU 440 GLN 441 ARG 442 PHE 443 ARG 444 GLY 445 PHE 446 GLY 447 GLY 448 VAL 449 ARG 450 ILE 451 GLU 452 GLU 453 ASP 454 VAL 455 VAL 456 VAL 457 THR 458 ASP 459 SER 460 GLY 461 ILE 462 GLU 463 LEU 464 LEU 465 THR 466 CYS 467 VAL 468 PRO 469 ARG 470 THR 471 VAL 472 GLU 473 GLU 474 ILE 475 GLU 476 ALA 477 CYS 478 MET 479 ALA 480 GLY 481 CYS 482 ASP 483 LYS 484 ALA 485 PHE 486 THR 487 PRO 488

Ligands

Unit 3	MN 499 MN 500 OH 501 GOL 504 GOL 505 GOL 506
Unit 4	MN 499 MN 500 OH 501 GOL 504 GOL 505 GOL 506 GOL 507