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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE- EXONUCLASE-THETA COMPLEX BOUND TO DNA IN THE EDITING MODE
Keywords DNA EDITING PROOFREADING EXONUCLEASE POLYMERASE, DNA BINDING
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5M1S     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE III SUBUNIT ALPHA  A 927 7274 0
2  Protein   DNA POLYMERASE III SUBUNIT BETA  B 366 2844 0
3  Protein   DNA POLYMERASE III SUBUNIT BETA  C 366 2844 0
4  Protein   DNA POLYMERASE III SUBUNIT EPSILON  D 229 1800 0
5  Other macromolecule   DNA PRIMER STRAND  P 17 354 0
6  Other macromolecule   DNA TEMPLATE STRAND  T 22 448 0
7  Protein   DNA POLYMERASE III SUBUNIT THETA  F 56 456 0
total       1983 16020 0

Proteins
Unit 1 MET1 SER2 GLU3 PRO4 ARG5 PHE6 VAL7 HIS8 LEU9 ARG10 VAL11 HIS12 SER13 ASP14 TYR15 SER16 MET17 ILE18 ASP19 GLY20 LEU21 ALA22 LYS23 THR24 ALA25 PRO26 LEU27 VAL28 LYS29 LYS30 ALA31 ALA32 ALA33 LEU34 GLY35 MET36 PRO37 ALA38 LEU39 ALA40 ILE41 THR42 ASP43 PHE44 THR45 ASN46 LEU47 CYS48 GLY49 LEU50 VAL51 LYS52 PHE53 TYR54 GLY55 ALA56 GLY57 HIS58 GLY59 ALA60 GLY61 ILE62 LYS63 PRO64 ILE65 VAL66 GLY67 ALA68 ASP69 PHE70 ASN71 VAL72 GLN73 CYS74 ASP75 LEU76 LEU77 GLY78 ASP79 GLU80 LEU81 THR82 HIS83 LEU84 THR85 VAL86 LEU87 ALA88 ALA89 ASN90 ASN91 THR92 GLY93 TYR94 GLN95 ASN96 LEU97 THR98 LEU99 LEU100 ILE101 SER102 LYS103 ALA104 TYR105 GLN106 ARG107 GLY108 TYR109 GLY110 ALA111 ALA112 GLY113 PRO114 ILE115 ILE116 ASP117 ARG118 ASP119 TRP120 LEU121 ILE122 GLU123 LEU124 ASN125 GLU126 GLY127 LEU128 ILE129 LEU130 LEU131 SER132 GLY133 GLY134 ARG135 MET136 GLY137 ASP138 VAL139 GLY140 ARG141 SER142 LEU143 LEU144 ARG145 GLY146 ASN147 SER148 ALA149 LEU150 VAL151 ASP152 GLU153 CYS154 VAL155 ALA156 PHE157 TYR158 GLU159 GLU160 HIS161 PHE162 PRO163 ASP164 ARG165 TYR166 PHE167 LEU168 GLU169 LEU170 ILE171 ARG172 THR173 GLY174 ARG175 PRO176 ASP177 GLU178 GLU179 SER180 TYR181 LEU182 HIS183 ALA184 ALA185 VAL186 GLU187 LEU188 ALA189 GLU190 ALA191 ARG192 GLY193 LEU194 PRO195 VAL196 VAL197 ALA198 THR199 ASN200 ASP201 VAL202 ARG203 PHE204 ILE205 ASP206 SER207 SER208 ASP209 PHE210 ASP211 ALA212 HIS213 GLU214 ILE215 ARG216 VAL217 ALA218 ILE219 HIS220 ASP221 GLY222 PHE223 THR224 LEU225 ASP226 ASP227 PRO228 LYS229 ARG230 PRO231 ARG232 ASN233 TYR234 SER235 PRO236 GLN237 GLN238 TYR239 MET240 ARG241 SER242 GLU243 GLU244 GLU245 MET246 CYS247 GLU248 LEU249 PHE250 ALA251 ASP252 ILE253 PRO254 GLU255 ALA256 LEU257 ALA258 ASN259 THR260 VAL261 GLU262 ILE263 ALA264 LYS265 ARG266 CYS267 ASN268 VAL269 THR270 VAL271 ARG272 LEU273 GLY274 GLU275 TYR276 PHE277 LEU278 PRO279 GLN280 PHE281 PRO282 THR283 GLY284 ASP285 MET286 SER287 THR288 GLU289 ASP290 TYR291 LEU292 VAL293 LYS294 ARG295 ALA296 LYS297 GLU298 GLY299 LEU300 GLU301 GLU302 ARG303 LEU304 ALA305 PHE306 LEU307 PHE308 PRO309 ASP310 GLU311 GLU312 GLU313 ARG314 LEU315 LYS316 ARG317 ARG318 PRO319 GLU320 TYR321 ASP322 GLU323 ARG324 LEU325 GLU326 THR327 GLU328 LEU329 GLN330 VAL331 ILE332 ASN333 GLN334 MET335 GLY336 PHE337 PRO338 GLY339 TYR340 PHE341 LEU342 ILE343 VAL344 MET345 GLU346 PHE347 ILE348 GLN349 TRP350 SER351 LYS352 ASP353 ASN354 GLY355 VAL356 PRO357 VAL358 GLY359 PRO360 GLY361 ARG362 GLY363 SER364 GLY365 ALA366 GLY367 SER368 LEU369 VAL370 ALA371 TYR372 ALA373 LEU374 LYS375 ILE376 THR377 ASP378 LEU379 ASP380 PRO381 LEU382 GLU383 PHE384 ASP385 LEU386 LEU387 PHE388 GLU389 ARG390 PHE391 LEU392 ASN393 PRO394 GLU395 ARG396 VAL397 SER398 MET399 PRO400 ASP401 PHE402 ASP403 VAL404 ASP405 PHE406 CYS407 MET408 GLU409 LYS410 ARG411 ASP412 GLN413 VAL414 ILE415 GLU416 HIS417 VAL418 ALA419 ASP420 MET421 TYR422 GLY423 ARG424 ASP425 ALA426 VAL427 SER428 GLN429 ILE430 ILE431 THR432 PHE433 GLY434 THR435 MET436 ALA437 ALA438 LYS439 ALA440 VAL441 ILE442 ARG443 ASP444 VAL445 GLY446 ARG447 VAL448 LEU449 GLY450 HIS451 PRO452 TYR453 GLY454 PHE455 VAL456 ASP457 ARG458 ILE459 SER460 LYS461 LEU462 ILE463 PRO464 PRO465 ASP466 PRO467 GLY468 MET469 THR470 LEU471 ALA472 LYS473 ALA474 PHE475 GLU476 ALA477 GLU478 PRO479 GLN480 LEU481 PRO482 GLU483 ILE484 TYR485 GLU486 ALA487 ASP488 GLU489 GLU490 VAL491 LYS492 ALA493 LEU494 ILE495 ASP496 MET497 ALA498 ARG499 LYS500 LEU501 GLU502 GLY503 VAL504 THR505 ARG506 ASN507 ALA508 GLY509 LYS510 HIS511 ALA512 GLY513 GLY514 VAL515 VAL516 ILE517 ALA518 PRO519 THR520 LYS521 ILE522 THR523 ASP524 PHE525 ALA526 PRO527 LEU528 TYR529 CYS530 ASP531 GLU532 GLU533 GLY534 LYS535 HIS536 PRO537 VAL538 THR539 GLN540 PHE541 ASP542 LYS543 SER544 ASP545 VAL546 GLU547 TYR548 ALA549 GLY550 LEU551 VAL552 LYS553 PHE554 ASP555 PHE556 LEU557 GLY558 LEU559 ARG560 THR561 LEU562 THR563 ILE564 ILE565 ASN566 TRP567 ALA568 LEU569 GLU570 MET571 ILE572 ASN573 LYS574 ARG575 ARG576 ALA577 LYS578 ASN579 GLY580 GLU581 PRO582 PRO583 LEU584 ASP585 ILE586 ALA587 ALA588 ILE589 PRO590 LEU591 ASP592 ASP593 LYS594 LYS595 SER596 PHE597 ASP598 MET599 LEU600 GLN601 ARG602 SER603 GLU604 THR605 THR606 ALA607 VAL608 PHE609 GLN610 LEU611 GLU612 SER613 ARG614 GLY615 MET616 LYS617 ASP618 LEU619 ILE620 LYS621 ARG622 LEU623 GLN624 PRO625 ASP626 CYS627 PHE628 GLU629 ASP630 MET631 ILE632 ALA633 LEU634 VAL635 ALA636 LEU637 PHE638 ARG639 PRO640 GLY641 PRO642 LEU643 GLN644 SER645 GLY646 MET647 VAL648 ASP649 ASN650 PHE651 ILE652 ASP653 ARG654 LYS655 HIS656 GLY657 ARG658 GLU659 GLU660 ILE661 SER662 TYR663 PRO664 ASP665 VAL666 GLN667 TRP668 GLN669 HIS670 GLU671 SER672 LEU673 LYS674 PRO675 VAL676 LEU677 GLU678 PRO679 THR680 TYR681 GLY682 ILE683 ILE684 LEU685 TYR686 GLN687 GLU688 GLN689 VAL690 MET691 GLN692 ILE693 ALA694 GLN695 VAL696 LEU697 SER698 GLY699 TYR700 THR701 LEU702 GLY703 GLY704 ALA705 ASP706 MET707 LEU708 ARG709 ARG710 ALA711 MET712 GLY713 LYS714 LYS715 LYS716 PRO717 GLU718 GLU719 MET720 ALA721 LYS722 GLN723 ARG724 SER725 VAL726 PHE727 ALA728 GLU729 GLY730 ALA731 GLU732 LYS733 ASN734 GLY735 ILE736 ASN737 ALA738 GLU739 LEU740 ALA741 MET742 LYS743 ILE744 PHE745 ASP746 LEU747 VAL748 GLU749 LYS750 PHE751 ALA752 GLY753 TYR754 GLY755 PHE756 ASN757 LYS758 SER759 HIS760 SER761 ALA762 ALA763 TYR764 ALA765 LEU766 VAL767 SER768 TYR769 GLN770 THR771 LEU772 TRP773 LEU774 LYS775 ALA776 HIS777 TYR778 PRO779 ALA780 GLU781 PHE782 MET783 ALA784 ALA785 VAL786 MET787 THR788 ALA789 ASP790 MET791 ASP792 ASN793 THR794 GLU795 LYS796 VAL797 VAL798 GLY799 LEU800 VAL801 ASP802 GLU803 CYS804 TRP805 ARG806 MET807 GLY808 LEU809 LYS810 ILE811 LEU812 PRO813 PRO814 ASP815 ILE816 ASN817 SER818 GLY819 LEU820 TYR821 HIS822 PHE823 HIS824 VAL825 ASN826 ASP827 ASP828 GLY829 GLU830 ILE831 VAL832 TYR833 GLY834 ILE835 GLY836 ALA837 ILE838 LYS839 GLY840 VAL841 GLY842 GLU843 GLY844 PRO845 ILE846 GLU847 ALA848 ILE849 ILE850 GLU851 ALA852 ARG853 ASN854 LYS855 GLY856 GLY857 TYR858 PHE859 ARG860 GLU861 LEU862 PHE863 ASP864 LEU865 CYS866 ALA867 ARG868 THR869 ASP870 THR871 LYS872 LYS873 LEU874 ASN875 ARG876 ARG877 VAL878 LEU879 GLU880 LYS881 LEU882 ILE883 MET884 SER885 GLY886 ALA887 PHE888 ASP889 ARG890 LEU891 GLY892 PRO893 HIS894 ARG895 ALA896 ALA897 LEU898 MET899 ASN900 SER901 LEU902 GLY903 ASP904 ALA905 LEU906 LYS907 ALA908 ALA909 ASP910 GLN911 HIS912 ALA913 LYS914 ALA915 GLU916 ALA917 ILE918 GLY919 GLN920 LEU921 ASP922 LEU923 PHE924 GLY925 VAL926 LEU927
Unit 2 MET1 LYS2 PHE3 THR4 VAL5 GLU6 ARG7 GLU8 HIS9 LEU10 LEU11 LYS12 PRO13 LEU14 GLN15 GLN16 VAL17 SER18 GLY19 PRO20 LEU21 GLY22 GLY23 ARG24 PRO25 THR26 LEU27 PRO28 ILE29 LEU30 GLY31 ASN32 LEU33 LEU34 LEU35 GLN36 VAL37 ALA38 ASP39 GLY40 THR41 LEU42 SER43 LEU44 THR45 GLY46 THR47 ASP48 LEU49 GLU50 MET51 GLU52 MET53 VAL54 ALA55 ARG56 VAL57 ALA58 LEU59 VAL60 GLN61 PRO62 HIS63 GLU64 PRO65 GLY66 ALA67 THR68 THR69 VAL70 PRO71 ALA72 ARG73 LYS74 PHE75 PHE76 ASP77 ILE78 CYS79 ARG80 GLY81 LEU82 PRO83 GLU84 GLY85 ALA86 GLU87 ILE88 ALA89 VAL90 GLN91 LEU92 GLU93 GLY94 GLU95 ARG96 MET97 LEU98 VAL99 ARG100 SER101 GLY102 ARG103 SER104 ARG105 PHE106 SER107 LEU108 SER109 THR110 LEU111 PRO112 ALA113 ALA114 ASP115 PHE116 PRO117 ASN118 LEU119 ASP120 ASP121 TRP122 GLN123 SER124 GLU125 VAL126 GLU127 PHE128 THR129 LEU130 PRO131 GLN132 ALA133 THR134 MET135 LYS136 ARG137 LEU138 ILE139 GLU140 ALA141 THR142 GLN143 PHE144 SER145 MET146 ALA147 HIS148 GLN149 ASP150 VAL151 ARG152 TYR153 TYR154 LEU155 ASN156 GLY157 MET158 LEU159 PHE160 GLU161 THR162 GLU163 GLY164 GLU165 GLU166 LEU167 ARG168 THR169 VAL170 ALA171 THR172 ASP173 GLY174 HIS175 ARG176 LEU177 ALA178 VAL179 CYS180 SER181 MET182 PRO183 ILE184 GLY185 GLN186 SER187 LEU188 PRO189 SER190 HIS191 SER192 VAL193 ILE194 VAL195 PRO196 ARG197 LYS198 GLY199 VAL200 ILE201 GLU202 LEU203 MET204 ARG205 MET206 LEU207 ASP208 GLY209 GLY210 ASP211 ASN212 PRO213 LEU214 ARG215 VAL216 GLN217 ILE218 GLY219 SER220 ASN221 ASN222 ILE223 ARG224 ALA225 HIS226 VAL227 GLY228 ASP229 PHE230 ILE231 PHE232 THR233 SER234 LYS235 LEU236 VAL237 ASP238 GLY239 ARG240 PHE241 PRO242 ASP243 TYR244 ARG245 ARG246 VAL247 LEU248 PRO249 LYS250 ASN251 PRO252 ASP253 LYS254 HIS255 LEU256 GLU257 ALA258 GLY259 CYS260 ASP261 LEU262 LEU263 LYS264 GLN265 ALA266 PHE267 ALA268 ARG269 ALA270 ALA271 ILE272 LEU273 SER274 ASN275 GLU276 LYS277 PHE278 ARG279 GLY280 VAL281 ARG282 LEU283 TYR284 VAL285 SER286 GLU287 ASN288 GLN289 LEU290 LYS291 ILE292 THR293 ALA294 ASN295 ASN296 PRO297 GLU298 GLN299 GLU300 GLU301 ALA302 GLU303 GLU304 ILE305 LEU306 ASP307 VAL308 THR309 TYR310 SER311 GLY312 ALA313 GLU314 MET315 GLU316 ILE317 GLY318 PHE319 ASN320 VAL321 SER322 TYR323 VAL324 LEU325 ASP326 VAL327 LEU328 ASN329 ALA330 LEU331 LYS332 CYS333 GLU334 ASN335 VAL336 ARG337 MET338 MET339 LEU340 THR341 ASP342 SER343 VAL344 SER345 SER346 VAL347 GLN348 ILE349 GLU350 ASP351 ALA352 ALA353 SER354 GLN355 SER356 ALA357 ALA358 TYR359 VAL360 VAL361 MET362 PRO363 MET364 ARG365 LEU366
Unit 3 MET1 LYS2 PHE3 THR4 VAL5 GLU6 ARG7 GLU8 HIS9 LEU10 LEU11 LYS12 PRO13 LEU14 GLN15 GLN16 VAL17 SER18 GLY19 PRO20 LEU21 GLY22 GLY23 ARG24 PRO25 THR26 LEU27 PRO28 ILE29 LEU30 GLY31 ASN32 LEU33 LEU34 LEU35 GLN36 VAL37 ALA38 ASP39 GLY40 THR41 LEU42 SER43 LEU44 THR45 GLY46 THR47 ASP48 LEU49 GLU50 MET51 GLU52 MET53 VAL54 ALA55 ARG56 VAL57 ALA58 LEU59 VAL60 GLN61 PRO62 HIS63 GLU64 PRO65 GLY66 ALA67 THR68 THR69 VAL70 PRO71 ALA72 ARG73 LYS74 PHE75 PHE76 ASP77 ILE78 CYS79 ARG80 GLY81 LEU82 PRO83 GLU84 GLY85 ALA86 GLU87 ILE88 ALA89 VAL90 GLN91 LEU92 GLU93 GLY94 GLU95 ARG96 MET97 LEU98 VAL99 ARG100 SER101 GLY102 ARG103 SER104 ARG105 PHE106 SER107 LEU108 SER109 THR110 LEU111 PRO112 ALA113 ALA114 ASP115 PHE116 PRO117 ASN118 LEU119 ASP120 ASP121 TRP122 GLN123 SER124 GLU125 VAL126 GLU127 PHE128 THR129 LEU130 PRO131 GLN132 ALA133 THR134 MET135 LYS136 ARG137 LEU138 ILE139 GLU140 ALA141 THR142 GLN143 PHE144 SER145 MET146 ALA147 HIS148 GLN149 ASP150 VAL151 ARG152 TYR153 TYR154 LEU155 ASN156 GLY157 MET158 LEU159 PHE160 GLU161 THR162 GLU163 GLY164 GLU165 GLU166 LEU167 ARG168 THR169 VAL170 ALA171 THR172 ASP173 GLY174 HIS175 ARG176 LEU177 ALA178 VAL179 CYS180 SER181 MET182 PRO183 ILE184 GLY185 GLN186 SER187 LEU188 PRO189 SER190 HIS191 SER192 VAL193 ILE194 VAL195 PRO196 ARG197 LYS198 GLY199 VAL200 ILE201 GLU202 LEU203 MET204 ARG205 MET206 LEU207 ASP208 GLY209 GLY210 ASP211 ASN212 PRO213 LEU214 ARG215 VAL216 GLN217 ILE218 GLY219 SER220 ASN221 ASN222 ILE223 ARG224 ALA225 HIS226 VAL227 GLY228 ASP229 PHE230 ILE231 PHE232 THR233 SER234 LYS235 LEU236 VAL237 ASP238 GLY239 ARG240 PHE241 PRO242 ASP243 TYR244 ARG245 ARG246 VAL247 LEU248 PRO249 LYS250 ASN251 PRO252 ASP253 LYS254 HIS255 LEU256 GLU257 ALA258 GLY259 CYS260 ASP261 LEU262 LEU263 LYS264 GLN265 ALA266 PHE267 ALA268 ARG269 ALA270 ALA271 ILE272 LEU273 SER274 ASN275 GLU276 LYS277 PHE278 ARG279 GLY280 VAL281 ARG282 LEU283 TYR284 VAL285 SER286 GLU287 ASN288 GLN289 LEU290 LYS291 ILE292 THR293 ALA294 ASN295 ASN296 PRO297 GLU298 GLN299 GLU300 GLU301 ALA302 GLU303 GLU304 ILE305 LEU306 ASP307 VAL308 THR309 TYR310 SER311 GLY312 ALA313 GLU314 MET315 GLU316 ILE317 GLY318 PHE319 ASN320 VAL321 SER322 TYR323 VAL324 LEU325 ASP326 VAL327 LEU328 ASN329 ALA330 LEU331 LYS332 CYS333 GLU334 ASN335 VAL336 ARG337 MET338 MET339 LEU340 THR341 ASP342 SER343 VAL344 SER345 SER346 VAL347 GLN348 ILE349 GLU350 ASP351 ALA352 ALA353 SER354 GLN355 SER356 ALA357 ALA358 TYR359 VAL360 VAL361 MET362 PRO363 MET364 ARG365 LEU366
Unit 4 ARG7 GLN8 ILE9 VAL10 LEU11 ASP12 THR13 GLU14 THR15 THR16 GLY17 MET18 ASN19 GLN20 ILE21 GLY22 ALA23 HIS24 TYR25 GLU26 GLY27 HIS28 LYS29 ILE30 ILE31 GLU32 ILE33 GLY34 ALA35 VAL36 GLU37 VAL38 VAL39 ASN40 ARG41 ARG42 LEU43 THR44 GLY45 ASN46 ASN47 PHE48 HIS49 VAL50 TYR51 LEU52 LYS53 PRO54 ASP55 ARG56 LEU57 VAL58 ASP59 PRO60 GLU61 ALA62 PHE63 GLY64 VAL65 HIS66 GLY67 ILE68 ALA69 ASP70 GLU71 PHE72 LEU73 LEU74 ASP75 LYS76 PRO77 THR78 PHE79 ALA80 GLU81 VAL82 ALA83 ASP84 GLU85 PHE86 MET87 ASP88 TYR89 ILE90 ARG91 GLY92 ALA93 GLU94 LEU95 VAL96 ILE97 HIS98 ASN99 ALA100 ALA101 PHE102 ASP103 ILE104 GLY105 PHE106 MET107 ASP108 TYR109 GLU110 PHE111 SER112 LEU113 LEU114 LYS115 ARG116 ASP117 ILE118 PRO119 LYS120 THR121 ASN122 THR123 PHE124 CYS125 LYS126 VAL127 THR128 ASP129 SER130 LEU131 ALA132 VAL133 ALA134 ARG135 LYS136 MET137 PHE138 PRO139 GLY140 LYS141 ARG142 ASN143 SER144 LEU145 ASP146 ALA147 LEU148 CYS149 ALA150 ARG151 TYR152 GLU153 ILE154 ASP155 ASN156 SER157 LYS158 ARG159 THR160 LEU161 HIS162 GLY163 ALA164 LEU165 LEU166 ASP167 ALA168 GLN169 ILE170 LEU171 ALA172 GLU173 VAL174 TYR175 LEU176 ALA177 MET178 THR179 GLY180 GLY181 GLN182 LEU183 SER184 LEU185 PRO186 LEU187 ALA188 MET189 GLU190 GLY191 GLU192 THR193 ILE202 GLN203 ARG204 ILE205 VAL206 ARG207 GLN208 ALA209 SER210 LYS211 LEU212 ARG213 VAL214 VAL215 PHE216 ALA217 THR218 ASP219 GLU220 GLU221 ILE222 ALA223 ALA224 HIS225 GLU226 ALA227 ARG228 LEU229 ASP230 LEU231 VAL232 GLN233 LYS234 LYS235 GLY236 GLY237 SER238 CYS239 LEU240 TRP241 ARG242 ALA243
Unit 7 GLN10 THR11 GLU12 MET13 ASP14 LYS15 VAL16 ASN17 VAL18 ASP19 LEU20 ALA21 ALA22 ALA23 GLY24 VAL25 ALA26 PHE27 LYS28 GLU29 ARG30 TYR31 ASN32 MET33 PRO34 VAL35 ILE36 ALA37 GLU38 ALA39 VAL40 GLU41 ARG42 GLU43 GLN44 PRO45 GLU46 HIS47 LEU48 ARG49 SER50 TRP51 PHE52 ARG53 GLU54 ARG55 LEU56 ILE57 ALA58 HIS59 ARG60 LEU61 ALA62 SER63 VAL64 ASN65

Other macromolecules
Unit 5 DT5 DA6 DG7 DT8 DA9 DC10 DT11 DA12 DG13 DG14 DA15 DC16 DG17 DA18 DA19 DG20 DT21
Unit 6 DG4 DG5 DA6 DG7 DT8 DC9 DC10 DT11 DT12 DC13 DG14 DT15 DC16 DC17 DT18 DA19 DG20 DT21 DA22 DC23 DT24 DA25

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany