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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE NUCLEAR COMPLEX WITH SHE2P AND THE E3-LOCALIZATION ELEMENT
Keywords SHE2P, ASH1-MRNA, MRNA TRANSPORT, TRANSPORT PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5M0I     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  D 235 1903 0
2  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  C 240 1935 0
3  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  B 238 1924 0
4  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  A 225 1821 0
5  RNA    E 28 596 0
6  RNA    F 28 596 0
7  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 3  H 8 56 0
8  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 3  J 7 46 0
9  Protein   SWI5-DEPENDENT HO EXPRESSION PROTEIN 3  I 7 46 0
10  Ligand   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  D 4 0 13
11  Ligand   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  C 7 0 25
12  Ligand   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  B 3 0 9
13  Ligand   SWI5-DEPENDENT HO EXPRESSION PROTEIN 2  A 2 0 5
14  Ligand   ASH1-E3 ELEMENT, RNA (28-MER)  E 4 0 16
15  Ligand   ASH1-E3 ELEMENT, RNA (28-MER)  F 3 0 6
16 Water     332 0 333
total       1371 8923 407
Proteins
Unit 1 LEU3 GLY4 SER5 ASP6 ILE7 LYS8 VAL9 THR10 PRO11 GLY12 THR13 SER14 GLU15 LEU16 VAL17 GLU18 GLN19 ILE20 LEU21 ALA22 LEU23 LEU24 SER25 ARG26 TYR27 LEU28 SER29 SER30 TYR31 ILE32 HIS33 VAL34 LEU35 ASN36 LYS37 PHE38 ILE39 SER40 HIS41 LEU42 ARG43 ARG44 VAL45 ALA46 THR47 LEU48 ARG49 PHE50 GLU51 ARG52 THR53 THR54 LEU55 ILE56 LYS57 PHE58 VAL59 LYS60 LYS61 LEU62 ARG63 PHE64 TYR65 ASN66 ASP67 SER68 VAL69 LEU70 SER71 TYR72 ASN73 ALA74 SER75 GLU76 PHE77 ILE78 ASN79 GLU80 GLY81 LYS82 ASN83 GLU84 LEU85 ASP86 PRO87 GLU88 ALA89 ASP90 SER91 PHE92 ASP93 LYS94 VAL95 ILE96 LEU97 PRO98 ILE99 ALA100 SER101 MET102 PHE103 VAL104 LYS105 SER106 VAL107 GLU108 THR109 PHE110 ASP111 LEU112 LEU113 ASN114 TYR115 TYR116 LEU117 THR118 GLN119 SER120 LEU121 GLN122 LYS123 GLU124 ILE125 LEU126 SER127 LYS128 THR129 LEU130 ASN131 GLU132 ASP133 LEU134 THR135 LEU136 THR137 ALA138 GLU139 SER140 ILE141 LEU142 ALA143 ILE144 ASP145 ASP146 THR147 TYR148 ASN149 HIS150 PHE151 VAL152 LYS153 PHE154 SER155 GLN156 TRP157 MET158 ILE159 GLU160 SER161 LEU162 ARG163 ILE164 GLY165 SER166 ASN167 LEU168 LEU169 ASP170 LEU171 GLU172 VAL173 VAL174 GLN175 PHE176 ALA177 ILE178 LYS179 SER180 ALA181 ASP182 GLU183 ASP184 GLU190 THR191 ASP192 ASN193 ILE194 PHE195 LEU196 GLN197 GLU198 ILE199 LEU200 PRO201 VAL202 ASN203 SER204 GLU205 GLU206 GLU207 PHE208 GLN209 THR210 LEU211 SER212 ALA213 ALA214 TRP215 HIS216 SER217 ILE218 LEU219 ASP220 GLY221 LYS222 LEU223 SER224 ALA225 LEU226 ASP227 GLU228 GLU229 PHE230 ASP231 VAL232 VAL233 ALA234 THR235 LYS236 TRP237 HIS238 ASP239 LYS240 PHE241 GLY242
Unit 2 LEU3 GLY4 SER5 ASP6 ILE7 LYS8 VAL9 THR10 PRO11 GLY12 THR13 SER14 GLU15 LEU16 VAL17 GLU18 GLN19 ILE20 LEU21 ALA22 LEU23 LEU24 SER25 ARG26 TYR27 LEU28 SER29 SER30 TYR31 ILE32 HIS33 VAL34 LEU35 ASN36 LYS37 PHE38 ILE39 SER40 HIS41 LEU42 ARG43 ARG44 VAL45 ALA46 THR47 LEU48 ARG49 PHE50 GLU51 ARG52 THR53 THR54 LEU55 ILE56 LYS57 PHE58 VAL59 LYS60 LYS61 LEU62 ARG63 PHE64 TYR65 ASN66 ASP67 SER68 VAL69 LEU70 SER71 TYR72 ASN73 ALA74 SER75 GLU76 PHE77 ILE78 ASN79 GLU80 GLY81 LYS82 ASP86 PRO87 GLU88 ALA89 ASP90 SER91 PHE92 ASP93 LYS94 VAL95 ILE96 LEU97 PRO98 ILE99 ALA100 SER101 MET102 PHE103 VAL104 LYS105 SER106 VAL107 GLU108 THR109 PHE110 ASP111 LEU112 LEU113 ASN114 TYR115 TYR116 LEU117 THR118 GLN119 SER120 LEU121 GLN122 LYS123 GLU124 ILE125 LEU126 SER127 LYS128 THR129 LEU130 ASN131 GLU132 ASP133 LEU134 THR135 LEU136 THR137 ALA138 GLU139 SER140 ILE141 LEU142 ALA143 ILE144 ASP145 ASP146 THR147 TYR148 ASN149 HIS150 PHE151 VAL152 LYS153 PHE154 SER155 GLN156 TRP157 MET158 ILE159 GLU160 SER161 LEU162 ARG163 ILE164 GLY165 SER166 ASN167 LEU168 LEU169 ASP170 LEU171 GLU172 VAL173 VAL174 GLN175 PHE176 ALA177 ILE178 LYS179 SER180 ALA181 ASP182 GLU183 ASP184 GLY185 THR186 ASN187 ILE188 GLY189 GLU190 THR191 ASP192 ASN193 ILE194 PHE195 LEU196 GLN197 GLU198 ILE199 LEU200 PRO201 VAL202 ASN203 SER204 GLU205 GLU206 GLU207 PHE208 GLN209 THR210 LEU211 SER212 ALA213 ALA214 TRP215 HIS216 SER217 ILE218 LEU219 ASP220 GLY221 LYS222 LEU223 SER224 ALA225 LEU226 ASP227 GLU228 GLU229 PHE230 ASP231 VAL232 VAL233 ALA234 THR235 LYS236 TRP237 HIS238 ASP239 LYS240 PHE241 GLY242 LYS243 LEU244 LYS245
Unit 3 LEU3 GLY4 SER5 ASP6 ILE7 LYS8 VAL9 THR10 PRO11 GLY12 THR13 SER14 GLU15 LEU16 VAL17 GLU18 GLN19 ILE20 LEU21 ALA22 LEU23 LEU24 SER25 ARG26 TYR27 LEU28 SER29 SER30 TYR31 ILE32 HIS33 VAL34 LEU35 ASN36 LYS37 PHE38 ILE39 SER40 HIS41 LEU42 ARG43 ARG44 VAL45 ALA46 THR47 LEU48 ARG49 PHE50 GLU51 ARG52 THR53 THR54 LEU55 ILE56 LYS57 PHE58 VAL59 LYS60 LYS61 LEU62 ARG63 PHE64 TYR65 ASN66 ASP67 SER68 VAL69 LEU70 SER71 TYR72 ASN73 ALA74 SER75 GLU76 PHE77 ILE78 ASN79 GLU80 GLY81 LYS82 ASN83 GLU84 LEU85 ASP86 PRO87 GLU88 ALA89 ASP90 SER91 PHE92 ASP93 LYS94 VAL95 ILE96 LEU97 PRO98 ILE99 ALA100 SER101 MET102 PHE103 VAL104 LYS105 SER106 VAL107 GLU108 THR109 PHE110 ASP111 LEU112 LEU113 ASN114 TYR115 TYR116 LEU117 THR118 GLN119 SER120 LEU121 GLN122 LYS123 GLU124 ILE125 LEU126 SER127 LYS128 THR129 LEU130 ASN131 GLU132 ASP133 LEU134 THR135 LEU136 THR137 ALA138 GLU139 SER140 ILE141 LEU142 ALA143 ILE144 ASP145 ASP146 THR147 TYR148 ASN149 HIS150 PHE151 VAL152 LYS153 PHE154 SER155 GLN156 TRP157 MET158 ILE159 GLU160 SER161 LEU162 ARG163 ILE164 GLY165 SER166 ASN167 LEU168 LEU169 ASP170 LEU171 GLU172 VAL173 VAL174 GLN175 PHE176 ALA177 ILE178 LYS179 SER180 ALA181 ASP182 GLU183 ASP184 GLY185 THR191 ASP192 ASN193 ILE194 PHE195 LEU196 GLN197 GLU198 ILE199 LEU200 PRO201 VAL202 ASN203 SER204 GLU205 GLU206 GLU207 PHE208 GLN209 THR210 LEU211 SER212 ALA213 ALA214 TRP215 HIS216 SER217 ILE218 LEU219 ASP220 GLY221 LYS222 LEU223 SER224 ALA225 LEU226 ASP227 GLU228 GLU229 PHE230 ASP231 VAL232 VAL233 ALA234 THR235 LYS236 TRP237 HIS238 ASP239 LYS240 PHE241 GLY242 LYS243 LEU244 LYS245
Unit 4 LEU3 GLY4 SER5 ASP6 ILE7 LYS8 VAL9 THR10 PRO11 GLY12 THR13 SER14 GLU15 LEU16 VAL17 GLU18 GLN19 ILE20 LEU21 ALA22 LEU23 LEU24 SER25 ARG26 TYR27 LEU28 SER29 SER30 TYR31 ILE32 HIS33 VAL34 LEU35 ASN36 LYS37 PHE38 ILE39 SER40 HIS41 LEU42 ARG43 ARG44 VAL45 ALA46 THR47 LEU48 ARG49 PHE50 GLU51 ARG52 THR53 THR54 LEU55 ILE56 LYS57 PHE58 VAL59 LYS60 LYS61 LEU62 ARG63 PHE64 TYR65 ASN66 ASP67 SER68 VAL69 LEU70 SER71 TYR72 ASN73 ALA74 SER75 GLU76 PHE77 ILE78 ALA89 ASP90 SER91 PHE92 ASP93 LYS94 VAL95 ILE96 LEU97 PRO98 ILE99 ALA100 SER101 MET102 PHE103 VAL104 LYS105 SER106 VAL107 GLU108 THR109 PHE110 ASP111 LEU112 LEU113 ASN114 TYR115 TYR116 LEU117 THR118 GLN119 SER120 LEU121 GLN122 LYS123 GLU124 ILE125 LEU126 SER127 LYS128 THR129 LEU130 ASN131 GLU132 ASP133 LEU134 THR135 LEU136 THR137 ALA138 GLU139 SER140 ILE141 LEU142 ALA143 ILE144 ASP145 ASP146 THR147 TYR148 ASN149 HIS150 PHE151 VAL152 LYS153 PHE154 SER155 GLN156 TRP157 MET158 ILE159 GLU160 SER161 LEU162 ARG163 ILE164 GLY165 SER166 ASN167 LEU168 LEU169 ASP170 LEU171 GLU172 VAL173 VAL174 GLN175 PHE176 ALA177 ILE178 LYS179 SER180 ALA181 ASP182 GLU183 ASP184 GLY185 ASP192 ASN193 ILE194 PHE195 LEU196 GLN197 GLU198 ILE199 LEU200 PRO201 VAL202 ASN203 SER204 GLU205 GLU206 GLU207 PHE208 GLN209 THR210 LEU211 SER212 ALA213 ALA214 TRP215 HIS216 SER217 ILE218 LEU219 ASP220 GLY221 LYS222 LEU223 SER224 ALA225 LEU226 ASP227 GLU228 GLU229 PHE230 ASP231 VAL232 VAL233 ALA234 THR235 LYS236 TRP237 HIS238 ASP239 LYS240 PHE241 GLY242 LYS243
Unit 7 SER398 VAL399 PRO400 PRO401 GLY402 VAL403 THR404 ARG405
Unit 8 ILE397 SER398 VAL399 PRO400 PRO401 GLY402 VAL403
Unit 9 ILE397 SER398 VAL399 PRO400 PRO401 GLY402 VAL403
Nucleic acids
Unit 5 G1 A2 U3 A4 A5 C6 U7 G8 A9 A10 U11 C12 G13 A14 A15 A16 G17 A18 C19 A20 U21 U22 A23 U24 C25 A26 C27 G28
Unit 6 G1 A2 U3 A4 A5 C6 U7 G8 A9 A10 U11 C12 G13 A14 A15 A16 G17 A18 C19 A20 U21 U22 A23 U24 C25 A26 C27 G28
Ligands
Unit 10 EDO301 EDO302 MG303 ACT304
Unit 11 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 MG307
Unit 12 EDO301 MG302 ACT303
Unit 13 EDO301 MG302
Unit 14 EDO101 ACT102 ACT103 ACT104
Unit 15 MG101 MG102 ACT103
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany