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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE CA2+-BOUND RABPHILIN 3A C2B DOMAIN SNAP25 C (P21 SPACE GROUP)
Keywords MEMBRANE FUSION, CALCIUM, C2 DOMAIN, EXOCYTOSIS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5LOW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RABPHILIN-3A  A 142 1158 0
2  Protein   RABPHILIN-3A  B 144 1173 0
3  Protein   RABPHILIN-3A  C 144 1172 0
4  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  D 68 557 0
5  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  E 56 450 0
6  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  F 68 546 0
7  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  G 60 476 0
8  Protein   RABPHILIN-3A  H 140 1137 0
9  Protein   RABPHILIN-3A  I 145 1177 0
10  Protein   RABPHILIN-3A  J 140 1141 0
11  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  K 72 582 0
12  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  L 63 503 0
13  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  M 72 580 0
14  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  N 60 486 0
15  Ligand   RABPHILIN-3A  A 3 0 8
16  Ligand   RABPHILIN-3A  B 3 0 8
17  Ligand   RABPHILIN-3A  C 3 0 8
18  Ligand   RABPHILIN-3A  H 2 0 2
19  Ligand   RABPHILIN-3A  I 2 0 2
20  Ligand   RABPHILIN-3A  J 2 0 2
21  Ligand   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  K 1 0 6
22  Ligand   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  M 2 0 12
23  Ligand   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  N 1 0 6
24 Water     94 0 94
total       1487 11138 148
Proteins
Unit 1 ASP537 ILE538 GLU539 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676 ASN677 GLU678
Unit 2 ASP537 ILE538 GLU539 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676 ASN677 GLU678 ASN679 HIS680
Unit 3 ASP537 ILE538 GLU539 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676 ASN677 GLU678 ASN679 HIS680
Unit 4 GLU5 PHE6 MET7 ARG8 ASN9 GLU10 LEU11 GLU12 GLU13 MET14 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72
Unit 5 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197
Unit 6 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72 GLU73 ALA74 GLU75 LYS76 ASN77 LEU78 LYS79 ASP80 LEU81 GLY82
Unit 7 PHE140 ALA141 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197 ARG198 ALA199
Unit 8 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676 ASN677 GLU678 ASN679
Unit 9 GLY536 ASP537 ILE538 GLU539 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676 ASN677 GLU678 ASN679 HIS680
Unit 10 ASP537 ILE538 GLU539 GLU540 ARG541 GLY542 LYS543 ILE544 LEU545 VAL546 SER547 LEU548 MET549 TYR550 SER551 THR552 GLN553 GLN554 GLY555 GLY556 LEU557 ILE558 VAL559 GLY560 ILE561 ILE562 ARG563 CYS564 VAL565 HIS566 LEU567 ALA568 ALA569 MET570 ASP571 ALA572 ASN573 GLY574 TYR575 SER576 ASP577 PRO578 PHE579 VAL580 LYS581 LEU582 TRP583 LEU584 LYS585 PRO586 ASP587 MET588 GLY589 LYS590 LYS591 ALA592 LYS593 HIS594 LYS595 THR596 GLN597 ILE598 LYS599 LYS600 LYS601 THR602 LEU603 ASN604 PRO605 GLU606 PHE607 ASN608 GLU609 GLU610 PHE611 PHE612 TYR613 ASP614 ILE615 LYS616 HIS617 SER618 ASP619 LEU620 ALA621 LYS622 LYS623 SER624 LEU625 ASP626 ILE627 SER628 VAL629 TRP630 ASP631 TYR632 ASP633 ILE634 GLY635 LYS636 SER637 ASN638 ASP639 TYR640 ILE641 GLY642 GLY643 CYS644 GLN645 LEU646 GLY647 ILE648 SER649 ALA650 LYS651 GLY652 GLU653 ARG654 LEU655 LYS656 HIS657 TRP658 TYR659 GLU660 CYS661 LEU662 LYS663 ASN664 LYS665 ASP666 LYS667 LYS668 ILE669 GLU670 ARG671 TRP672 HIS673 GLN674 LEU675 GLN676
Unit 11 GLY3 SER4 GLU5 PHE6 MET7 ARG8 ASN9 GLU10 LEU11 GLU12 GLU13 MET14 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72 GLU73 ALA74
Unit 12 ALA141 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197 ARG198 ALA199 THR200 LYS201 MET202 LEU203
Unit 13 LEU11 GLU12 GLU13 MET14 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72 GLU73 ALA74 GLU75 LYS76 ASN77 LEU78 LYS79 ASP80 LEU81 GLY82
Unit 14 GLU139 PHE140 ALA141 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197 ARG198
Ligands
Unit 15 GOL701 CA702 CA703
Unit 16 GOL701 CA702 CA703
Unit 17 GOL701 CA702 CA703
Unit 18 CA701 CA702
Unit 19 CA701 CA702
Unit 20 CA701 CA702
Unit 21 GOL101
Unit 22 GOL101 GOL102
Unit 23 GOL301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany