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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PDX1-I320 COMPLEX MULTIPLE CRYSTALS
Keywords BETA/ALPHA BARREL, PYRIDOXAL PHOSPHATE SYNTHASE, GLUTAMINE AMIDOTRANSFERASE, VITAMIN B6 BIOSYTHESIS, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5LNV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  A 277 2076 0
2  Protein   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  B 278 2081 0
3  Protein   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  C 276 2069 0
4  Protein   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  D 275 2063 0
5  Ligand   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  A 3 0 17
6  Ligand   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  B 3 0 17
7  Ligand   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  C 3 0 17
8  Ligand   PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT PDX1.3  D 3 0 17
9 Water     573 0 573
total       1691 8289 641
Proteins
Unit 1 SER22 PRO23 PHE24 SER25 VAL26 LYS27 VAL28 GLY29 LEU30 ALA31 GLN32 MET33 LEU34 ARG35 GLY36 GLY37 VAL38 ILE39 MET40 ASP41 VAL42 VAL43 ASN44 ALA45 GLU46 GLN47 ALA48 ARG49 ILE50 ALA51 GLU52 GLU53 ALA54 GLY55 ALA56 CYS57 ALA58 VAL59 MET60 ALA61 LEU62 GLU63 ARG64 VAL65 PRO66 ALA67 ASP68 ILE69 ARG70 ALA71 GLN72 GLY73 GLY74 VAL75 ALA76 ARG77 MET78 SER79 ASP80 PRO81 GLN82 MET83 ILE84 LYS85 GLU86 ILE87 LYS88 GLN89 ALA90 VAL91 THR92 ILE93 PRO94 VAL95 MET96 ALA97 LYS98 ALA99 ARG100 ILE101 GLY102 HIS103 PHE104 VAL105 GLU106 ALA107 GLN108 ILE109 LEU110 GLU111 ALA112 ILE113 GLY114 ILE115 ASP116 TYR117 ILE118 ASP119 GLU120 SER121 GLU122 VAL123 LEU124 THR125 LEU126 ALA127 ASP128 GLU129 ASP130 HIS131 HIS132 ILE133 ASN134 LYS135 HIS136 ASN137 PHE138 ARG139 ILE140 PRO141 PHE142 VAL143 CYS144 GLY145 CYS146 ARG147 ASN148 LEU149 GLY150 GLU151 ALA152 LEU153 ARG154 ARG155 ILE156 ARG157 GLU158 GLY159 ALA160 ALA161 MET162 ILE163 ARG164 THR165 LYS166 GLY167 GLU168 ALA169 GLY170 THR171 GLY172 ASN173 ILE174 ILE175 GLU176 ALA177 VAL178 ARG179 HIS180 VAL181 ARG182 SER183 VAL184 ASN185 GLY186 ASP187 ILE188 ARG189 VAL190 LEU191 ARG192 ASN193 MET194 ASP195 ASP196 ASP197 GLU198 VAL199 PHE200 THR201 PHE202 ALA203 LYS204 LYS205 LEU206 ALA207 ALA208 PRO209 TYR210 ASP211 LEU212 VAL213 MET214 GLN215 THR216 LYS217 GLN218 LEU219 GLY220 ARG221 LEU222 PRO223 VAL224 VAL225 GLN226 PHE227 ALA228 ALA229 GLY230 GLY231 VAL232 ALA233 THR234 PRO235 ALA236 ASP237 ALA238 ALA239 LEU240 MET241 MET242 GLN243 LEU244 GLY245 CYS246 ASP247 GLY248 VAL249 PHE250 VAL251 GLY252 SER253 GLY254 ILE255 PHE256 LYS257 SER258 GLY259 ASP260 PRO261 ALA262 ARG263 ARG264 ALA265 ARG266 ALA267 ILE268 VAL269 GLN270 ALA271 VAL272 THR273 HIS274 TYR275 SER276 ASP277 PRO278 GLU279 MET280 LEU281 VAL282 GLU283 VAL284 SER285 CYS286 GLY287 LEU288 GLY289 GLU290 ALA291 MET292 VAL293 GLY294 ILE295 ASN296 LEU297 ASN298
Unit 2 LYS21 SER22 PRO23 PHE24 SER25 VAL26 LYS27 VAL28 GLY29 LEU30 ALA31 GLN32 MET33 LEU34 ARG35 GLY36 GLY37 VAL38 ILE39 MET40 ASP41 VAL42 VAL43 ASN44 ALA45 GLU46 GLN47 ALA48 ARG49 ILE50 ALA51 GLU52 GLU53 ALA54 GLY55 ALA56 CYS57 ALA58 VAL59 MET60 ALA61 LEU62 GLU63 ARG64 VAL65 PRO66 ALA67 ASP68 ILE69 ARG70 ALA71 GLN72 GLY73 GLY74 VAL75 ALA76 ARG77 MET78 SER79 ASP80 PRO81 GLN82 MET83 ILE84 LYS85 GLU86 ILE87 LYS88 GLN89 ALA90 VAL91 THR92 ILE93 PRO94 VAL95 MET96 ALA97 LYS98 ALA99 ARG100 ILE101 GLY102 HIS103 PHE104 VAL105 GLU106 ALA107 GLN108 ILE109 LEU110 GLU111 ALA112 ILE113 GLY114 ILE115 ASP116 TYR117 ILE118 ASP119 GLU120 SER121 GLU122 VAL123 LEU124 THR125 LEU126 ALA127 ASP128 GLU129 ASP130 HIS131 HIS132 ILE133 ASN134 LYS135 HIS136 ASN137 PHE138 ARG139 ILE140 PRO141 PHE142 VAL143 CYS144 GLY145 CYS146 ARG147 ASN148 LEU149 GLY150 GLU151 ALA152 LEU153 ARG154 ARG155 ILE156 ARG157 GLU158 GLY159 ALA160 ALA161 MET162 ILE163 ARG164 THR165 LYS166 GLY167 GLU168 ALA169 GLY170 THR171 GLY172 ASN173 ILE174 ILE175 GLU176 ALA177 VAL178 ARG179 HIS180 VAL181 ARG182 SER183 VAL184 ASN185 GLY186 ASP187 ILE188 ARG189 VAL190 LEU191 ARG192 ASN193 MET194 ASP195 ASP196 ASP197 GLU198 VAL199 PHE200 THR201 PHE202 ALA203 LYS204 LYS205 LEU206 ALA207 ALA208 PRO209 TYR210 ASP211 LEU212 VAL213 MET214 GLN215 THR216 LYS217 GLN218 LEU219 GLY220 ARG221 LEU222 PRO223 VAL224 VAL225 GLN226 PHE227 ALA228 ALA229 GLY230 GLY231 VAL232 ALA233 THR234 PRO235 ALA236 ASP237 ALA238 ALA239 LEU240 MET241 MET242 GLN243 LEU244 GLY245 CYS246 ASP247 GLY248 VAL249 PHE250 VAL251 GLY252 SER253 GLY254 ILE255 PHE256 LYS257 SER258 GLY259 ASP260 PRO261 ALA262 ARG263 ARG264 ALA265 ARG266 ALA267 ILE268 VAL269 GLN270 ALA271 VAL272 THR273 HIS274 TYR275 SER276 ASP277 PRO278 GLU279 MET280 LEU281 VAL282 GLU283 VAL284 SER285 CYS286 GLY287 LEU288 GLY289 GLU290 ALA291 MET292 VAL293 GLY294 ILE295 ASN296 LEU297 ASN298
Unit 3 SER22 PRO23 PHE24 SER25 VAL26 LYS27 VAL28 GLY29 LEU30 ALA31 GLN32 MET33 LEU34 ARG35 GLY36 GLY37 VAL38 ILE39 MET40 ASP41 VAL42 VAL43 ASN44 ALA45 GLU46 GLN47 ALA48 ARG49 ILE50 ALA51 GLU52 GLU53 ALA54 GLY55 ALA56 CYS57 ALA58 VAL59 MET60 ALA61 LEU62 GLU63 ARG64 VAL65 PRO66 ALA67 ASP68 ILE69 ARG70 ALA71 GLN72 GLY73 GLY74 VAL75 ALA76 ARG77 MET78 SER79 ASP80 PRO81 GLN82 MET83 ILE84 LYS85 GLU86 ILE87 LYS88 GLN89 ALA90 VAL91 THR92 ILE93 PRO94 VAL95 MET96 ALA97 LYS98 ALA99 ARG100 ILE101 GLY102 HIS103 PHE104 VAL105 GLU106 ALA107 GLN108 ILE109 LEU110 GLU111 ALA112 ILE113 GLY114 ILE115 ASP116 TYR117 ILE118 ASP119 GLU120 SER121 GLU122 VAL123 LEU124 THR125 LEU126 ALA127 ASP128 GLU129 ASP130 HIS131 HIS132 ILE133 ASN134 LYS135 HIS136 ASN137 PHE138 ARG139 ILE140 PRO141 PHE142 VAL143 CYS144 GLY145 CYS146 ARG147 ASN148 LEU149 GLY150 GLU151 ALA152 LEU153 ARG154 ARG155 ILE156 ARG157 GLU158 GLY159 ALA160 ALA161 MET162 ILE163 ARG164 THR165 LYS166 GLY167 GLU168 ALA169 GLY170 THR171 GLY172 ASN173 ILE174 ILE175 GLU176 ALA177 VAL178 ARG179 HIS180 VAL181 ARG182 SER183 VAL184 ASN185 GLY186 ASP187 ILE188 ARG189 VAL190 LEU191 ARG192 ASN193 MET194 ASP195 ASP196 ASP197 GLU198 VAL199 PHE200 THR201 PHE202 ALA203 LYS204 LYS205 LEU206 ALA207 ALA208 PRO209 TYR210 ASP211 LEU212 VAL213 MET214 GLN215 THR216 LYS217 GLN218 LEU219 GLY220 ARG221 LEU222 PRO223 VAL224 VAL225 GLN226 PHE227 ALA228 ALA229 GLY230 GLY231 VAL232 ALA233 THR234 PRO235 ALA236 ASP237 ALA238 ALA239 LEU240 MET241 MET242 GLN243 LEU244 GLY245 CYS246 ASP247 GLY248 VAL249 PHE250 VAL251 GLY252 SER253 GLY254 ILE255 PHE256 LYS257 SER258 GLY259 ASP260 PRO261 ALA262 ARG263 ARG264 ALA265 ARG266 ALA267 ILE268 VAL269 GLN270 ALA271 VAL272 THR273 HIS274 TYR275 SER276 ASP277 PRO278 GLU279 MET280 LEU281 VAL282 GLU283 VAL284 SER285 CYS286 GLY287 LEU288 GLY289 GLU290 ALA291 MET292 VAL293 GLY294 ILE295 ASN296 LEU297
Unit 4 PRO23 PHE24 SER25 VAL26 LYS27 VAL28 GLY29 LEU30 ALA31 GLN32 MET33 LEU34 ARG35 GLY36 GLY37 VAL38 ILE39 MET40 ASP41 VAL42 VAL43 ASN44 ALA45 GLU46 GLN47 ALA48 ARG49 ILE50 ALA51 GLU52 GLU53 ALA54 GLY55 ALA56 CYS57 ALA58 VAL59 MET60 ALA61 LEU62 GLU63 ARG64 VAL65 PRO66 ALA67 ASP68 ILE69 ARG70 ALA71 GLN72 GLY73 GLY74 VAL75 ALA76 ARG77 MET78 SER79 ASP80 PRO81 GLN82 MET83 ILE84 LYS85 GLU86 ILE87 LYS88 GLN89 ALA90 VAL91 THR92 ILE93 PRO94 VAL95 MET96 ALA97 LYS98 ALA99 ARG100 ILE101 GLY102 HIS103 PHE104 VAL105 GLU106 ALA107 GLN108 ILE109 LEU110 GLU111 ALA112 ILE113 GLY114 ILE115 ASP116 TYR117 ILE118 ASP119 GLU120 SER121 GLU122 VAL123 LEU124 THR125 LEU126 ALA127 ASP128 GLU129 ASP130 HIS131 HIS132 ILE133 ASN134 LYS135 HIS136 ASN137 PHE138 ARG139 ILE140 PRO141 PHE142 VAL143 CYS144 GLY145 CYS146 ARG147 ASN148 LEU149 GLY150 GLU151 ALA152 LEU153 ARG154 ARG155 ILE156 ARG157 GLU158 GLY159 ALA160 ALA161 MET162 ILE163 ARG164 THR165 LYS166 GLY167 GLU168 ALA169 GLY170 THR171 GLY172 ASN173 ILE174 ILE175 GLU176 ALA177 VAL178 ARG179 HIS180 VAL181 ARG182 SER183 VAL184 ASN185 GLY186 ASP187 ILE188 ARG189 VAL190 LEU191 ARG192 ASN193 MET194 ASP195 ASP196 ASP197 GLU198 VAL199 PHE200 THR201 PHE202 ALA203 LYS204 LYS205 LEU206 ALA207 ALA208 PRO209 TYR210 ASP211 LEU212 VAL213 MET214 GLN215 THR216 LYS217 GLN218 LEU219 GLY220 ARG221 LEU222 PRO223 VAL224 VAL225 GLN226 PHE227 ALA228 ALA229 GLY230 GLY231 VAL232 ALA233 THR234 PRO235 ALA236 ASP237 ALA238 ALA239 LEU240 MET241 MET242 GLN243 LEU244 GLY245 CYS246 ASP247 GLY248 VAL249 PHE250 VAL251 GLY252 SER253 GLY254 ILE255 PHE256 LYS257 SER258 GLY259 ASP260 PRO261 ALA262 ARG263 ARG264 ALA265 ARG266 ALA267 ILE268 VAL269 GLN270 ALA271 VAL272 THR273 HIS274 TYR275 SER276 ASP277 PRO278 GLU279 MET280 LEU281 VAL282 GLU283 VAL284 SER285 CYS286 GLY287 LEU288 GLY289 GLU290 ALA291 MET292 VAL293 GLY294 ILE295 ASN296 LEU297
Ligands
Unit 5 PO4401 SO4402 KIK403
Unit 6 PO4401 SO4402 KIK403
Unit 7 PO4401 SO4402 KIK403
Unit 8 PO4401 SO4402 KIK403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany