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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HUMAN IGE-FC BOUND TO ITS B CELL RE DERCD23
Keywords IMMUNOGLOBULIN FOLD LECTIN, ANTIBODY RECEPTOR, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5LGK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   IG EPSILON CHAIN C REGION  A 307 2406 0
2  Protein   IG EPSILON CHAIN C REGION  B 304 2386 0
3  Protein   IG EPSILON CHAIN C REGION  C 306 2399 0
4  Protein   IG EPSILON CHAIN C REGION  D 304 2386 0
5  Protein   LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR  E 105 864 0
6  Protein   LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR  F 106 873 0
7  Ligand    G 3 0 39
8  Ligand    H 3 0 39
9  Ligand   IG EPSILON CHAIN C REGION  A 1 0 14
10  Ligand   IG EPSILON CHAIN C REGION  C 1 0 14
total       1440 11314 106
Proteins
Unit 1 VAL234 LYS235 ILE236 LEU237 GLN238 SER239 SER240 CYS241 ASP242 GLY243 GLY244 GLY245 HIS246 PHE247 PRO248 PRO249 THR250 ILE251 GLN252 LEU253 CYS254 LEU255 VAL256 SER257 GLY258 TYR259 THR260 PRO261 GLY262 THR263 ILE264 GLN265 ILE266 THR267 TRP268 LEU269 GLU270 ASP271 GLY272 GLN273 VAL274 MET275 ASP276 VAL277 ASP278 LEU279 SER280 THR281 ALA282 SER283 THR284 THR285 GLN286 GLU287 GLY288 GLU289 LEU290 ALA291 SER292 THR293 GLN294 SER295 GLU296 LEU297 THR298 LEU299 SER300 GLN301 LYS302 HIS303 TRP304 LEU305 SER306 ASP307 ARG308 THR309 TYR310 THR311 CYS312 GLN313 VAL314 THR315 TYR316 GLN317 GLY318 HIS319 THR320 PHE321 GLU322 ASP323 SER324 THR325 LYS326 LYS327 CYS328 ALA329 ASP330 SER331 ASN332 PRO333 ARG334 GLY335 VAL336 SER337 ALA338 TYR339 LEU340 SER341 ARG342 PRO343 SER344 PRO345 PHE346 ASP347 LEU348 PHE349 ILE350 ARG351 LYS352 SER353 PRO354 THR355 ILE356 THR357 CYS358 LEU359 VAL360 VAL361 ASP362 LEU363 ALA364 PRO365 SER366 LYS367 GLY368 THR369 VAL370 GLN371 LEU372 THR373 TRP374 SER375 ARG376 ALA377 SER378 GLY379 LYS380 PRO381 VAL382 GLN383 HIS384 SER385 THR386 ARG387 LYS388 GLU389 GLU390 LYS391 GLN392 ARG393 ASN394 GLY395 THR396 LEU397 THR398 VAL399 THR400 SER401 THR402 LEU403 PRO404 VAL405 GLY406 THR407 ARG408 ASP409 TRP410 ILE411 GLU412 GLY413 GLU414 THR415 TYR416 GLN417 CYS418 ARG419 VAL420 THR421 HIS422 PRO423 HIS424 LEU425 PRO426 ARG427 ALA428 LEU429 MET430 ARG431 SER432 THR433 THR434 LYS435 THR436 SER437 GLY438 PRO439 ARG440 ALA441 ALA442 PRO443 GLU444 VAL445 TYR446 ALA447 PHE448 ALA449 THR450 PRO451 GLU452 TRP453 PRO454 GLY455 SER456 ARG457 ASP458 LYS459 ARG460 THR461 LEU462 ALA463 CYS464 LEU465 ILE466 GLN467 ASN468 PHE469 MET470 PRO471 GLU472 ASP473 ILE474 SER475 VAL476 GLN477 TRP478 LEU479 HIS480 ASN481 GLU482 VAL483 GLN484 LEU485 PRO486 ASP487 ALA488 ARG489 HIS490 SER491 THR492 THR493 GLN494 PRO495 ARG496 LYS497 THR498 LYS499 GLY500 SER501 GLY502 PHE503 PHE504 VAL505 PHE506 SER507 ARG508 LEU509 GLU510 VAL511 THR512 ARG513 ALA514 GLU515 TRP516 GLU517 GLN518 LYS519 ASP520 GLU521 PHE522 ILE523 CYS524 ARG525 ALA526 VAL527 HIS528 GLU529 ALA530 ALA531 SER532 PRO533 SER534 GLN535 THR536 VAL537 GLN538 ARG539 ALA540
Unit 2 LYS235 ILE236 LEU237 GLN238 SER239 SER240 CYS241 ASP242 GLY243 GLY244 GLY245 HIS246 PHE247 PRO248 PRO249 THR250 ILE251 GLN252 LEU253 CYS254 LEU255 VAL256 SER257 GLY258 TYR259 THR260 PRO261 GLY262 THR263 ILE264 GLN265 ILE266 THR267 TRP268 LEU269 GLU270 ASP271 GLY272 GLN273 VAL274 MET275 ASP276 VAL277 ASP278 LEU279 SER280 THR281 ALA282 SER283 THR284 THR285 GLN286 GLU287 GLY288 GLU289 LEU290 ALA291 SER292 THR293 GLN294 SER295 GLU296 LEU297 THR298 LEU299 SER300 GLN301 LYS302 HIS303 TRP304 LEU305 SER306 ASP307 ARG308 THR309 TYR310 THR311 CYS312 GLN313 VAL314 THR315 TYR316 GLN317 GLY318 HIS319 THR320 PHE321 GLU322 ASP323 SER324 THR325 LYS326 LYS327 CYS328 ALA329 ASP330 SER331 ASN332 PRO333 ARG334 GLY335 VAL336 SER337 ALA338 TYR339 LEU340 SER341 ARG342 PRO343 SER344 PRO345 PHE346 ASP347 LEU348 PHE349 ILE350 ARG351 LYS352 SER353 PRO354 THR355 ILE356 THR357 CYS358 LEU359 VAL360 VAL361 ASP362 PRO365 SER366 LYS367 GLY368 THR369 VAL370 GLN371 LEU372 THR373 TRP374 SER375 ARG376 ALA377 SER378 GLY379 LYS380 PRO381 VAL382 GLN383 HIS384 SER385 THR386 ARG387 LYS388 GLU389 GLU390 LYS391 GLN392 ARG393 ASN394 GLY395 THR396 LEU397 THR398 VAL399 THR400 SER401 THR402 LEU403 PRO404 VAL405 GLY406 THR407 ARG408 ASP409 TRP410 ILE411 GLU412 GLY413 GLU414 THR415 TYR416 GLN417 CYS418 ARG419 VAL420 THR421 HIS422 PRO423 HIS424 LEU425 PRO426 ARG427 ALA428 LEU429 MET430 ARG431 SER432 THR433 THR434 LYS435 THR436 SER437 GLY438 PRO439 ARG440 ALA441 ALA442 PRO443 GLU444 VAL445 TYR446 ALA447 PHE448 ALA449 THR450 PRO451 GLU452 TRP453 PRO454 GLY455 SER456 ARG457 ASP458 LYS459 ARG460 THR461 LEU462 ALA463 CYS464 LEU465 ILE466 GLN467 ASN468 PHE469 MET470 PRO471 GLU472 ASP473 ILE474 SER475 VAL476 GLN477 TRP478 LEU479 HIS480 ASN481 GLU482 VAL483 GLN484 LEU485 PRO486 ASP487 ALA488 ARG489 HIS490 SER491 THR492 THR493 GLN494 PRO495 ARG496 LYS497 THR498 LYS499 GLY500 SER501 GLY502 PHE503 PHE504 VAL505 PHE506 SER507 ARG508 LEU509 GLU510 VAL511 THR512 ARG513 ALA514 GLU515 TRP516 GLU517 GLN518 LYS519 ASP520 GLU521 PHE522 ILE523 CYS524 ARG525 ALA526 VAL527 HIS528 GLU529 ALA530 ALA531 SER532 PRO533 SER534 GLN535 THR536 VAL537 GLN538 ARG539 ALA540
Unit 3 LYS235 ILE236 LEU237 GLN238 SER239 SER240 CYS241 ASP242 GLY243 GLY244 GLY245 HIS246 PHE247 PRO248 PRO249 THR250 ILE251 GLN252 LEU253 CYS254 LEU255 VAL256 SER257 GLY258 TYR259 THR260 PRO261 GLY262 THR263 ILE264 GLN265 ILE266 THR267 TRP268 LEU269 GLU270 ASP271 GLY272 GLN273 VAL274 MET275 ASP276 VAL277 ASP278 LEU279 SER280 THR281 ALA282 SER283 THR284 THR285 GLN286 GLU287 GLY288 GLU289 LEU290 ALA291 SER292 THR293 GLN294 SER295 GLU296 LEU297 THR298 LEU299 SER300 GLN301 LYS302 HIS303 TRP304 LEU305 SER306 ASP307 ARG308 THR309 TYR310 THR311 CYS312 GLN313 VAL314 THR315 TYR316 GLN317 GLY318 HIS319 THR320 PHE321 GLU322 ASP323 SER324 THR325 LYS326 LYS327 CYS328 ALA329 ASP330 SER331 ASN332 PRO333 ARG334 GLY335 VAL336 SER337 ALA338 TYR339 LEU340 SER341 ARG342 PRO343 SER344 PRO345 PHE346 ASP347 LEU348 PHE349 ILE350 ARG351 LYS352 SER353 PRO354 THR355 ILE356 THR357 CYS358 LEU359 VAL360 VAL361 ASP362 LEU363 ALA364 PRO365 SER366 LYS367 GLY368 THR369 VAL370 GLN371 LEU372 THR373 TRP374 SER375 ARG376 ALA377 SER378 GLY379 LYS380 PRO381 VAL382 GLN383 HIS384 SER385 THR386 ARG387 LYS388 GLU389 GLU390 LYS391 GLN392 ARG393 ASN394 GLY395 THR396 LEU397 THR398 VAL399 THR400 SER401 THR402 LEU403 PRO404 VAL405 GLY406 THR407 ARG408 ASP409 TRP410 ILE411 GLU412 GLY413 GLU414 THR415 TYR416 GLN417 CYS418 ARG419 VAL420 THR421 HIS422 PRO423 HIS424 LEU425 PRO426 ARG427 ALA428 LEU429 MET430 ARG431 SER432 THR433 THR434 LYS435 THR436 SER437 GLY438 PRO439 ARG440 ALA441 ALA442 PRO443 GLU444 VAL445 TYR446 ALA447 PHE448 ALA449 THR450 PRO451 GLU452 TRP453 PRO454 GLY455 SER456 ARG457 ASP458 LYS459 ARG460 THR461 LEU462 ALA463 CYS464 LEU465 ILE466 GLN467 ASN468 PHE469 MET470 PRO471 GLU472 ASP473 ILE474 SER475 VAL476 GLN477 TRP478 LEU479 HIS480 ASN481 GLU482 VAL483 GLN484 LEU485 PRO486 ASP487 ALA488 ARG489 HIS490 SER491 THR492 THR493 GLN494 PRO495 ARG496 LYS497 THR498 LYS499 GLY500 SER501 GLY502 PHE503 PHE504 VAL505 PHE506 SER507 ARG508 LEU509 GLU510 VAL511 THR512 ARG513 ALA514 GLU515 TRP516 GLU517 GLN518 LYS519 ASP520 GLU521 PHE522 ILE523 CYS524 ARG525 ALA526 VAL527 HIS528 GLU529 ALA530 ALA531 SER532 PRO533 SER534 GLN535 THR536 VAL537 GLN538 ARG539 ALA540
Unit 4 LYS235 ILE236 LEU237 GLN238 SER239 SER240 CYS241 ASP242 GLY243 GLY244 GLY245 HIS246 PHE247 PRO248 PRO249 THR250 ILE251 GLN252 LEU253 CYS254 LEU255 VAL256 SER257 GLY258 TYR259 THR260 PRO261 GLY262 THR263 ILE264 GLN265 ILE266 THR267 TRP268 LEU269 GLU270 ASP271 GLY272 GLN273 VAL274 MET275 ASP276 VAL277 ASP278 LEU279 SER280 THR281 ALA282 SER283 THR284 THR285 GLN286 GLU287 GLY288 GLU289 LEU290 ALA291 SER292 THR293 GLN294 SER295 GLU296 LEU297 THR298 LEU299 SER300 GLN301 LYS302 HIS303 TRP304 LEU305 SER306 ASP307 ARG308 THR309 TYR310 THR311 CYS312 GLN313 VAL314 THR315 TYR316 GLN317 GLY318 HIS319 THR320 PHE321 GLU322 ASP323 SER324 THR325 LYS326 LYS327 CYS328 ALA329 ASP330 SER331 ASN332 PRO333 ARG334 GLY335 VAL336 SER337 ALA338 TYR339 LEU340 SER341 ARG342 PRO343 SER344 PRO345 PHE346 ASP347 LEU348 PHE349 ILE350 ARG351 LYS352 SER353 PRO354 THR355 ILE356 THR357 CYS358 LEU359 VAL360 VAL361 ASP362 PRO365 SER366 LYS367 GLY368 THR369 VAL370 GLN371 LEU372 THR373 TRP374 SER375 ARG376 ALA377 SER378 GLY379 LYS380 PRO381 VAL382 GLN383 HIS384 SER385 THR386 ARG387 LYS388 GLU389 GLU390 LYS391 GLN392 ARG393 ASN394 GLY395 THR396 LEU397 THR398 VAL399 THR400 SER401 THR402 LEU403 PRO404 VAL405 GLY406 THR407 ARG408 ASP409 TRP410 ILE411 GLU412 GLY413 GLU414 THR415 TYR416 GLN417 CYS418 ARG419 VAL420 THR421 HIS422 PRO423 HIS424 LEU425 PRO426 ARG427 ALA428 LEU429 MET430 ARG431 SER432 THR433 THR434 LYS435 THR436 SER437 GLY438 PRO439 ARG440 ALA441 ALA442 PRO443 GLU444 VAL445 TYR446 ALA447 PHE448 ALA449 THR450 PRO451 GLU452 TRP453 PRO454 GLY455 SER456 ARG457 ASP458 LYS459 ARG460 THR461 LEU462 ALA463 CYS464 LEU465 ILE466 GLN467 ASN468 PHE469 MET470 PRO471 GLU472 ASP473 ILE474 SER475 VAL476 GLN477 TRP478 LEU479 HIS480 ASN481 GLU482 VAL483 GLN484 LEU485 PRO486 ASP487 ALA488 ARG489 HIS490 SER491 THR492 THR493 GLN494 PRO495 ARG496 LYS497 THR498 LYS499 GLY500 SER501 GLY502 PHE503 PHE504 VAL505 PHE506 SER507 ARG508 LEU509 GLU510 VAL511 THR512 ARG513 ALA514 GLU515 TRP516 GLU517 GLN518 LYS519 ASP520 GLU521 PHE522 ILE523 CYS524 ARG525 ALA526 VAL527 HIS528 GLU529 ALA530 ALA531 SER532 PRO533 SER534 GLN535 THR536 VAL537 GLN538 ARG539 ALA540
Unit 5 LYS166 TRP167 ILE168 ASN169 PHE170 GLN171 ARG172 LYS173 CYS174 TYR175 TYR176 PHE177 GLY178 LYS179 GLY180 THR181 LYS182 GLN183 TRP184 VAL185 HIS186 ALA187 ARG188 TYR189 ALA190 CYS191 ASP192 ASP193 MET194 GLU195 GLY196 GLN197 LEU198 VAL199 SER200 ILE201 HIS202 SER203 PRO204 GLU205 GLU206 GLN207 ASP208 PHE209 LEU210 THR211 LYS212 HIS213 ALA214 SER215 HIS216 THR217 GLY218 SER219 TRP220 ILE221 GLY222 LEU223 ARG224 ASN225 LEU226 ASP227 LEU228 LYS229 GLY230 GLU231 PHE232 ILE233 TRP234 VAL235 ASP236 GLY237 SER238 HIS239 VAL240 ASP241 TYR242 SER243 ASP258 CYS259 VAL260 MET261 MET262 ARG263 GLY264 SER265 GLY266 ARG267 TRP268 ASN269 ASP270 ALA271 PHE272 CYS273 ASP274 ARG275 LYS276 LEU277 GLY278 ALA279 TRP280 VAL281 CYS282 ASP283 ARG284
Unit 6 GLU165 LYS166 TRP167 ILE168 ASN169 PHE170 GLN171 ARG172 LYS173 CYS174 TYR175 TYR176 PHE177 GLY178 LYS179 GLY180 THR181 LYS182 GLN183 TRP184 VAL185 HIS186 ALA187 ARG188 TYR189 ALA190 CYS191 ASP192 ASP193 MET194 GLU195 GLY196 GLN197 LEU198 VAL199 SER200 ILE201 HIS202 SER203 PRO204 GLU205 GLU206 GLN207 ASP208 PHE209 LEU210 THR211 LYS212 HIS213 ALA214 SER215 HIS216 THR217 GLY218 SER219 TRP220 ILE221 GLY222 LEU223 ARG224 ASN225 LEU226 ASP227 LEU228 LYS229 GLY230 GLU231 PHE232 ILE233 TRP234 VAL235 ASP236 GLY237 SER238 HIS239 VAL240 ASP241 TYR242 SER243 ASP258 CYS259 VAL260 MET261 MET262 ARG263 GLY264 SER265 GLY266 ARG267 TRP268 ASN269 ASP270 ALA271 PHE272 CYS273 ASP274 ARG275 LYS276 LEU277 GLY278 ALA279 TRP280 VAL281 CYS282 ASP283 ARG284
Ligands
Unit 7 NAG1 NAG2 BMA3
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG601
Unit 10 NAG601
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany