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Sequence, Chains, Asymmetric and Biological Units

Title A VIRAL CAPSID:ANTIBODY COMPLEX
Keywords TRIM21, 9C12, ADENOVIRUS, NEUTRALIZATION, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5LDN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEXON PROTEIN,HEXON CAPSID  A 927 7383 0
2  Protein   ANTIBODY  L 213 1652 0
3  Protein   ANTIBODY  H 218 1637 0
4 Water     483 0 483
total       1841 10672 483

Proteins
Unit 1 PRO7 GLN8 TRP9 SER10 TYR11 MET12 HIS13 ILE14 SER15 GLY16 GLN17 ASP18 ALA19 SER20 GLU21 TYR22 LEU23 SER24 PRO25 GLY26 LEU27 VAL28 GLN29 PHE30 ALA31 ARG32 ALA33 THR34 GLU35 THR36 TYR37 PHE38 SER39 LEU40 ASN41 ASN42 LYS43 PHE44 ARG45 ASN46 PRO47 THR48 VAL49 ALA50 PRO51 THR52 HIS53 ASP54 VAL55 THR56 THR57 ASP58 ARG59 SER60 GLN61 ARG62 LEU63 THR64 LEU65 ARG66 PHE67 ILE68 PRO69 VAL70 ASP71 ARG72 GLU73 ASP74 THR75 ALA76 TYR77 SER78 TYR79 LYS80 ALA81 ARG82 PHE83 THR84 LEU85 ALA86 VAL87 GLY88 ASP89 ASN90 ARG91 VAL92 LEU93 ASP94 MET95 ALA96 SER97 THR98 TYR99 PHE100 ASP101 ILE102 ARG103 GLY104 VAL105 LEU106 ASP107 ARG108 GLY109 PRO110 THR111 PHE112 LYS113 PRO114 TYR115 SER116 GLY117 THR118 ALA119 TYR120 ASN121 ALA122 LEU123 ALA124 PRO125 LYS126 GLY127 ALA128 PRO129 ASN130 PRO131 CYS132 GLU133 TRP134 ASP135 GLU136 ALA137 ALA138 THR139 ALA140 LEU141 GLU142 ILE143 ASN144 LEU145 ALA159 GLN160 ALA161 GLU162 GLN163 LYS164 THR165 HIS166 VAL167 PHE168 GLY169 GLN170 ALA171 PRO172 TYR173 SER174 GLY175 ILE176 ASN177 ILE178 THR179 LYS180 GLU181 GLY182 ILE183 GLN184 ILE185 GLY186 VAL187 GLU188 GLY189 GLN190 THR191 PRO192 LYS193 TYR194 ALA195 ASP196 LYS197 THR198 PHE199 GLN200 PRO201 GLU202 PRO203 GLN204 ILE205 GLY206 GLU207 SER208 GLN209 TRP210 TYR211 GLU212 THR213 GLU214 ILE215 ASN216 HIS217 ALA218 ALA219 GLY220 ARG221 VAL222 LEU223 LYS224 LYS225 THR226 THR227 PRO228 MET229 LYS230 PRO231 CYS232 TYR233 GLY234 SER235 TYR236 ALA237 LYS238 PRO239 THR240 ASN241 GLU242 ASN243 GLY244 GLY245 GLN246 GLY247 ILE248 LEU249 VAL250 LYS251 GLN252 GLN253 ASN254 GLY255 LYS256 LEU257 GLU258 SER259 GLN260 VAL261 GLU262 MET263 GLN264 PHE265 PHE266 SER267 THR268 THR269 GLU270 ALA271 THR272 ALA273 GLY274 ASN275 GLY276 ASP277 ASN278 LEU279 THR280 PRO281 LYS282 VAL283 VAL284 LEU285 TYR286 SER287 GLU288 ASP289 VAL290 ASP291 ILE292 GLU293 THR294 PRO295 ASP296 THR297 HIS298 ILE299 SER300 TYR301 MET302 PRO303 THR304 ILE305 LYS306 GLU307 GLY308 ASN309 SER310 ARG311 GLU312 LEU313 MET314 GLY315 GLN316 GLN317 SER318 MET319 PRO320 ASN321 ARG322 PRO323 ASN324 TYR325 ILE326 ALA327 PHE328 ARG329 ASP330 ASN331 PHE332 ILE333 GLY334 LEU335 MET336 TYR337 TYR338 ASN339 SER340 THR341 GLY342 ASN343 MET344 GLY345 VAL346 LEU347 ALA348 GLY349 GLN350 ALA351 SER352 GLN353 LEU354 ASN355 ALA356 VAL357 VAL358 ASP359 LEU360 GLN361 ASP362 ARG363 ASN364 THR365 GLU366 LEU367 SER368 TYR369 GLN370 LEU371 LEU372 LEU373 ASP374 SER375 ILE376 GLY377 ASP378 ARG379 THR380 ARG381 TYR382 PHE383 SER384 MET385 TRP386 ASN387 GLN388 ALA389 VAL390 ASP391 SER392 TYR393 ASP394 PRO395 ASP396 VAL397 ARG398 ILE399 ILE400 GLU401 ASN402 HIS403 GLY404 THR405 GLU406 ASP407 GLU408 LEU409 PRO410 ASN411 TYR412 CYS413 PHE414 PRO415 LEU416 GLY417 GLY418 VAL419 ILE420 ASN421 THR422 GLU423 THR424 LEU425 THR426 LYS427 VAL428 LYS429 PRO430 LYS431 THR432 GLY433 GLN434 GLU435 ASN436 GLY437 TRP438 GLU439 LYS440 ASP441 ALA442 THR443 GLU444 PHE445 SER446 ASP447 LYS448 ASN449 GLU450 ILE451 ARG452 VAL453 GLY454 ASN455 ASN456 PHE457 ALA458 MET459 GLU460 ILE461 ASN462 LEU463 ASN464 ALA465 ASN466 LEU467 TRP468 ARG469 ASN470 PHE471 LEU472 TYR473 SER474 ASN475 ILE476 ALA477 LEU478 TYR479 LEU480 PRO481 ASP482 LYS483 LEU484 LYS485 TYR486 SER487 PRO488 SER489 ASN490 VAL491 LYS492 ILE493 SER494 ASP495 ASN496 PRO497 ASN498 THR499 TYR500 ASP501 TYR502 MET503 ASN504 LYS505 ARG506 VAL507 VAL508 ALA509 PRO510 GLY511 LEU512 VAL513 ASP514 CYS515 TYR516 ILE517 ASN518 LEU519 GLY520 ALA521 ARG522 TRP523 SER524 LEU525 ASP526 TYR527 MET528 ASP529 ASN530 VAL531 ASN532 PRO533 PHE534 ASN535 HIS536 HIS537 ARG538 ASN539 ALA540 GLY541 LEU542 ARG543 TYR544 ARG545 SER546 MET547 LEU548 LEU549 GLY550 ASN551 GLY552 ARG553 TYR554 VAL555 PRO556 PHE557 HIS558 ILE559 GLN560 VAL561 PRO562 GLN563 LYS564 PHE565 PHE566 ALA567 ILE568 LYS569 ASN570 LEU571 LEU572 LEU573 LEU574 PRO575 GLY576 SER577 TYR578 THR579 TYR580 GLU581 TRP582 ASN583 PHE584 ARG585 LYS586 ASP587 VAL588 ASN589 MET590 VAL591 LEU592 GLN593 SER594 SER595 LEU596 GLY597 ASN598 ASP599 LEU600 ARG601 VAL602 ASP603 GLY604 ALA605 SER606 ILE607 LYS608 PHE609 ASP610 SER611 ILE612 CYS613 LEU614 TYR615 ALA616 THR617 PHE618 PHE619 PRO620 MET621 ALA622 HIS623 ASN624 THR625 ALA626 SER627 THR628 LEU629 GLU630 ALA631 MET632 LEU633 ARG634 ASN635 ASP636 THR637 ASN638 ASP639 GLN640 SER641 PHE642 ASN643 ASP644 TYR645 LEU646 SER647 ALA648 ALA649 ASN650 MET651 LEU652 TYR653 PRO654 ILE655 PRO656 ALA657 ASN658 ALA659 THR660 ASN661 VAL662 PRO663 ILE664 SER665 ILE666 PRO667 SER668 ARG669 ASN670 TRP671 ALA672 ALA673 PHE674 ARG675 GLY676 TRP677 ALA678 PHE679 THR680 ARG681 LEU682 LYS683 THR684 LYS685 GLU686 THR687 PRO688 SER689 LEU690 GLY691 SER692 GLY693 TYR694 ASP695 PRO696 TYR697 TYR698 THR699 TYR700 SER701 GLY702 SER703 ILE704 PRO705 TYR706 LEU707 ASP708 GLY709 THR710 PHE711 TYR712 LEU713 ASN714 HIS715 THR716 PHE717 LYS718 LYS719 VAL720 ALA721 ILE722 THR723 PHE724 ASP725 SER726 SER727 VAL728 SER729 TRP730 PRO731 GLY732 ASN733 ASP734 ARG735 LEU736 LEU737 THR738 PRO739 ASN740 GLU741 PHE742 GLU743 ILE744 LYS745 ARG746 SER747 VAL748 ASP749 GLY750 GLU751 GLY752 TYR753 ASN754 VAL755 ALA756 GLN757 CYS758 ASN759 MET760 THR761 LYS762 ASP763 TRP764 PHE765 LEU766 VAL767 GLN768 MET769 LEU770 ALA771 ASN772 TYR773 ASN774 ILE775 GLY776 TYR777 GLN778 GLY779 PHE780 TYR781 ILE782 PRO783 GLU784 SER785 TYR786 LYS787 ASP788 ARG789 MET790 TYR791 SER792 PHE793 PHE794 ARG795 ASN796 PHE797 GLN798 PRO799 MET800 SER801 ARG802 GLN803 VAL804 VAL805 ASP806 ASP807 THR808 LYS809 TYR810 LYS811 ASP812 TYR813 GLN814 GLN815 VAL816 GLY817 ILE818 LEU819 HIS820 GLN821 HIS822 ASN823 ASN824 SER825 GLY826 PHE827 VAL828 GLY829 TYR830 LEU831 ALA832 PRO833 THR834 MET835 ARG836 GLU837 GLY838 GLN839 ALA840 TYR841 PRO842 ALA843 ASN844 PHE845 PRO846 TYR847 PRO848 LEU849 ILE850 GLY851 LYS852 THR853 ALA854 VAL855 ASP856 SER857 ILE858 THR859 GLN860 LYS861 LYS862 PHE863 LEU864 CYS865 ASP866 ARG867 THR868 LEU869 TRP870 ARG871 ILE872 PRO873 PHE874 SER875 SER876 ASN877 PHE878 MET879 SER880 MET881 GLY882 ALA883 LEU884 THR885 ASP886 LEU887 GLY888 GLN889 ASN890 LEU891 LEU892 TYR893 ALA894 ASN895 SER896 ALA897 HIS898 ALA899 LEU900 ASP901 MET902 THR903 PHE904 GLU905 VAL906 ASP907 PRO908 MET909 ASP910 GLU911 PRO912 THR913 LEU914 LEU915 TYR916 VAL917 LEU918 PHE919 GLU920 VAL921 PHE922 ASP923 VAL924 VAL925 ARG926 VAL927 HIS928 ARG929 PRO930 HIS931 ARG932 GLY933 VAL934 ILE935 GLU936 THR937 VAL938 TYR939 LEU940 ARG941 THR942 PRO943 PHE944 SER945 ALA946
Unit 2 ASN21 ILE22 VAL23 MET24 THR25 GLN26 THR27 PRO28 LYS29 PHE30 LEU31 LEU32 VAL33 SER34 ILE35 GLY36 ASP37 SER38 ILE39 THR40 ILE41 THR42 CYS43 LYS44 ALA45 SER46 GLN47 SER48 VAL49 THR50 ASN51 ASP52 ALA53 ALA54 TRP55 TYR56 GLN57 LYS58 LYS59 PRO60 GLY61 GLN62 SER63 PRO64 GLN65 LEU66 LEU67 ILE68 TYR69 GLN70 ALA71 SER72 THR73 ARG74 TYR75 THR76 GLY77 VAL78 PRO79 ASP80 ARG81 PHE82 SER83 GLY84 SER85 GLY86 TYR87 GLY88 THR89 ASP90 PHE91 THR92 PHE93 THR94 ILE95 SER96 ALA97 VAL98 GLN99 ALA100 GLU101 ASP102 LEU103 ALA104 VAL105 TYR106 PHE107 CYS108 HIS109 GLN110 ASP111 TYR112 SER113 SER114 PRO115 LEU116 THR117 PHE118 GLY119 ALA120 GLY121 THR122 LYS123 LEU124 GLU125 LEU126 LYS127 ARG128 ALA129 ASP130 ALA131 ALA132 PRO133 THR134 VAL135 SER136 ILE137 PHE138 PRO139 PRO140 SER141 SER142 GLU143 GLN144 LEU145 THR146 SER147 GLY148 GLY149 ALA150 SER151 VAL152 VAL153 CYS154 PHE155 LEU156 ASN157 ASN158 PHE159 TYR160 PRO161 LYS162 ASP163 ILE164 ASN165 VAL166 LYS167 TRP168 LYS169 ILE170 ASP171 GLY172 SER173 GLU174 ARG175 GLN176 ASN177 GLY178 VAL179 LEU180 ASN181 SER182 TRP183 THR184 ASP185 GLN186 ASP187 SER188 LYS189 ASP190 SER191 THR192 TYR193 SER194 MET195 SER196 SER197 THR198 LEU199 THR200 LEU201 THR202 LYS203 ASP204 GLU205 TYR206 GLU207 ARG208 HIS209 ASN210 SER211 TYR212 THR213 CYS214 GLU215 ALA216 THR217 HIS218 LYS219 THR220 SER221 THR222 SER223 PRO224 ILE225 VAL226 LYS227 SER228 PHE229 ASN230 ARG231 ASN232 GLU233
Unit 3 VAL1 GLN2 LEU3 LYS4 GLN5 SER6 GLY7 PRO8 GLY9 LEU10 LEU11 GLN12 PRO13 SER14 GLN15 ARG16 LEU17 SER18 ILE19 THR20 CYS21 THR22 VAL23 SER24 GLY25 PHE26 SER27 LEU28 GLY29 ARG30 TYR31 GLY32 VAL33 HIS34 TRP35 ILE36 ARG37 GLN38 SER39 PRO40 GLY41 LYS42 GLY43 LEU44 GLU45 TRP46 LEU47 GLY48 VAL49 ILE50 TRP51 ARG52 GLY53 GLY54 THR55 THR56 ASP57 TYR58 ASN59 ALA60 VAL61 PHE62 MET63 SER64 ARG65 LEU66 SER67 ILE68 ASN69 LYS70 ASP71 ASP72 SER73 LYS74 SER75 GLN76 VAL77 PHE78 PHE79 THR80 MET81 ASN82 SER83 LEU84 ARG85 PRO86 ASP87 ASP88 THR89 ALA90 ILE91 TYR92 TYR93 CYS94 ALA95 ARG96 GLN97 GLY98 SER99 ASN100 PHE101 PRO102 LEU103 ALA104 TYR105 TRP106 GLY107 GLN108 GLY109 THR110 LEU111 VAL112 THR113 VAL114 SER115 ALA116 ALA117 LYS118 THR119 THR120 PRO121 PRO122 SER123 VAL124 TYR125 PRO126 LEU127 ALA128 PRO129 GLY130 SER131 ALA132 ALA133 GLN134 THR135 ASN136 SER137 MET138 VAL139 THR140 LEU141 GLY142 CYS143 LEU144 VAL145 LYS146 GLY147 TYR148 PHE149 PRO150 GLU151 PRO152 VAL153 THR154 VAL155 THR156 TRP157 ASN158 SER159 GLY160 SER161 LEU162 SER163 SER164 GLY165 VAL166 HIS167 THR168 PHE169 PRO170 ALA171 VAL172 LEU173 GLN174 SER175 ASP176 LEU177 TYR178 THR179 LEU180 SER181 SER182 SER183 VAL184 THR185 VAL186 PRO187 SER188 SER189 THR190 TRP191 PRO192 SER193 GLN194 THR195 VAL196 THR197 CYS198 ASN199 VAL200 ALA201 HIS202 PRO203 ALA204 SER205 SER206 THR207 LYS208 VAL209 ASP210 LYS211 LYS212 ILE213 VAL214 PRO215 ARG216 ASP217 CYS218

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany