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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN HEPARANASE, IN COMPLEX WITH GLUCU CONFIGURED AZIRIDINE PROBE JJB355
Keywords HEPARANASE, PROBE, GH79, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5L9Y     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEPARANASE  A 384 3048 0
2  Protein   HEPARANASE  B 74 586 0
3  Ligand    C 2 0 24
4  Ligand   HEPARANASE  A 6 0 64
5 Water     227 0 227
total       693 3634 315

Proteins
Unit 1 PHE160 LYS161 ASN162 SER163 THR164 TYR165 SER166 ARG167 SER168 SER169 VAL170 ASP171 VAL172 LEU173 TYR174 THR175 PHE176 ALA177 ASN178 CYS179 SER180 GLY181 LEU182 ASP183 LEU184 ILE185 PHE186 GLY187 LEU188 ASN189 ALA190 LEU191 LEU192 ARG193 THR194 ALA195 ASP196 LEU197 GLN198 TRP199 ASN200 SER201 SER202 ASN203 ALA204 GLN205 LEU206 LEU207 LEU208 ASP209 TYR210 CYS211 SER212 SER213 LYS214 GLY215 TYR216 ASN217 ILE218 SER219 TRP220 GLU221 LEU222 GLY223 ASN224 GLU225 PRO226 ASN227 SER228 PHE229 LEU230 LYS231 LYS232 ALA233 ASP234 ILE235 PHE236 ILE237 ASN238 GLY239 SER240 GLN241 LEU242 GLY243 GLU244 ASP245 PHE246 ILE247 GLN248 LEU249 HIS250 LYS251 LEU252 LEU253 ARG254 LYS255 SER256 THR257 PHE258 LYS259 ASN260 ALA261 LYS262 LEU263 TYR264 GLY265 PRO266 ASP267 VAL268 GLY269 GLN270 PRO271 ARG272 ARG273 LYS274 THR275 ALA276 LYS277 MET278 LEU279 LYS280 SER281 PHE282 LEU283 LYS284 ALA285 GLY286 GLY287 GLU288 VAL289 ILE290 ASP291 SER292 VAL293 THR294 TRP295 HIS296 HIS297 TYR298 TYR299 LEU300 ASN301 GLY302 ARG303 THR304 ALA305 THR306 ARG307 GLU308 ASP309 PHE310 LEU311 ASN312 PRO313 ASP314 VAL315 LEU316 ASP317 ILE318 PHE319 ILE320 SER321 SER322 VAL323 GLN324 LYS325 VAL326 PHE327 GLN328 VAL329 VAL330 GLU331 SER332 THR333 ARG334 PRO335 GLY336 LYS337 LYS338 VAL339 TRP340 LEU341 GLY342 GLU343 THR344 SER345 SER346 ALA347 TYR348 GLY349 GLY350 GLY351 ALA352 PRO353 LEU354 LEU355 SER356 ASP357 THR358 PHE359 ALA360 ALA361 GLY362 PHE363 MET364 TRP365 LEU366 ASP367 LYS368 LEU369 GLY370 LEU371 SER372 ALA373 ARG374 MET375 GLY376 ILE377 GLU378 VAL379 VAL380 MET381 ARG382 GLN383 VAL384 PHE385 PHE386 GLY387 ALA388 GLY389 ASN390 TYR391 HIS392 LEU393 VAL394 ASP395 GLU396 ASN397 PHE398 ASP399 PRO400 LEU401 PRO402 ASP403 TYR404 TRP405 LEU406 SER407 LEU408 LEU409 PHE410 LYS411 LYS412 LEU413 VAL414 GLY415 THR416 LYS417 VAL418 LEU419 MET420 ALA421 SER422 VAL423 GLN424 GLY425 SER426 LYS427 ARG428 ARG429 LYS430 LEU431 ARG432 VAL433 TYR434 LEU435 HIS436 CYS437 THR438 ASN439 THR440 ASP441 ASN442 PRO443 ARG444 TYR445 LYS446 GLU447 GLY448 ASP449 LEU450 THR451 LEU452 TYR453 ALA454 ILE455 ASN456 LEU457 HIS458 ASN459 VAL460 THR461 LYS462 TYR463 LEU464 ARG465 LEU466 PRO467 TYR468 PRO469 PHE470 SER471 ASN472 LYS473 GLN474 VAL475 ASP476 LYS477 TYR478 LEU479 LEU480 ARG481 PRO482 LEU483 GLY484 PRO485 HIS486 GLY487 LEU488 LEU489 SER490 LYS491 SER492 VAL493 GLN494 LEU495 ASN496 GLY497 LEU498 THR499 LEU500 LYS501 MET502 VAL503 ASP504 ASP505 GLN506 THR507 LEU508 PRO509 PRO510 LEU511 MET512 GLU513 LYS514 PRO515 LEU516 ARG517 PRO518 GLY519 SER520 SER521 LEU522 GLY523 LEU524 PRO525 ALA526 PHE527 SER528 TYR529 SER530 PHE531 PHE532 VAL533 ILE534 ARG535 ASN536 ALA537 LYS538 VAL539 ALA540 ALA541 CYS542 ILE543
Unit 2 GLN36 ASP37 VAL38 VAL39 ASP40 LEU41 ASP42 PHE43 PHE44 THR45 GLN46 GLU47 PRO48 LEU49 HIS50 LEU51 VAL52 SER53 PRO54 SER55 PHE56 LEU57 SER58 VAL59 THR60 ILE61 ASP62 ALA63 ASN64 LEU65 ALA66 THR67 ASP68 PRO69 ARG70 PHE71 LEU72 ILE73 LEU74 LEU75 GLY76 SER77 PRO78 LYS79 LEU80 ARG81 THR82 LEU83 ALA84 ARG85 GLY86 LEU87 SER88 PRO89 ALA90 TYR91 LEU92 ARG93 PHE94 GLY95 GLY96 THR97 LYS98 THR99 ASP100 PHE101 LEU102 ILE103 PHE104 ASP105 PRO106 LYS107 LYS108 GLU109

Ligands
Unit 3 NAG1 FUC2
Unit 4 NAG601 NAG602 EDO605 EDO606 EDO607 6S6608

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany