5L6L - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF CAULOBACTER CRESCENTUS VAPBC1 BOUND TO OPERATOR
• Keywords: PIN DOMAIN, TOXIN-ANTITOXIN, RIBONUCLEASE, DNA-BINDING, HYDR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5L6L	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	VAPB FAMILY PROTEIN	A	65	483	8
2	Protein	RIBONUCLEASE VAPC	B	127	970	16
3	Protein	RIBONUCLEASE VAPC	C	127	970	16
4	Protein	VAPB FAMILY PROTEIN	D	84	648	8
5	Protein	VAPB FAMILY PROTEIN	E	64	477	8
6	Protein	RIBONUCLEASE VAPC	F	127	970	16
7	Protein	RIBONUCLEASE VAPC	G	127	970	16
8	Protein	VAPB FAMILY PROTEIN	H	81	620	8
9	Other macromolecule	DNA (27-MER)	M	27	541	0
10	Other macromolecule	DNA (27-MER)	N	27	556	0
11	Water			139	0	140
total				995	7205	236

Proteins

Unit 1	HIS 0 HIS 1 ALA 2 ARG 3 ALA 4 THR 5 GLY 6 LYS 7 THR 8 PHE 9 ARG 10 SER 11 GLY 12 ASN 13 SER 14 GLU 15 ALA 16 VAL 17 ARG 18 LEU 19 PRO 20 ARG 21 ASP 22 LEU 23 ALA 24 PHE 25 GLY 26 ALA 27 ASP 28 VAL 29 GLU 30 LEU 31 THR 32 LEU 33 ILE 34 ARG 35 SER 36 GLY 37 ASP 38 VAL 39 LEU 40 THR 41 ILE 42 TYR 43 PRO 44 SER 45 LYS 46 GLY 47 SER 48 ILE 49 ALA 50 ASP 51 LEU 52 VAL 53 ALA 54 THR 55 LEU 56 ASN 57 GLN 58 MSE 59 PRO 60 ARG 61 PRO 62 ASP 63 SER 64
Unit 2	ALA 2 TYR 3 VAL 4 LEU 5 ASP 6 THR 7 ASN 8 VAL 9 ALA 10 ILE 11 HIS 12 LEU 13 ARG 14 ASP 15 GLY 16 ASP 17 PRO 18 GLU 19 VAL 20 THR 21 THR 22 ARG 23 VAL 24 THR 25 ALA 26 LEU 27 ASN 28 GLY 29 ALA 30 ILE 31 LEU 32 LEU 33 SER 34 ILE 35 ILE 36 SER 37 ARG 38 VAL 39 GLU 40 LEU 41 GLU 42 GLY 43 GLY 44 VAL 45 TYR 46 ARG 47 GLU 48 ALA 49 ALA 50 GLN 51 ALA 52 GLY 53 LEU 54 ARG 55 ARG 56 SER 57 ARG 58 LEU 59 ASP 60 VAL 61 MSE 62 LEU 63 LYS 64 VAL 65 LEU 66 PRO 67 VAL 68 LEU 69 ASP 70 PHE 71 ASP 72 GLY 73 ALA 74 ALA 75 ALA 76 ASP 77 GLU 78 TYR 79 ARG 80 ARG 81 ILE 82 VAL 83 GLU 84 SER 85 ALA 86 GLY 87 TYR 88 SER 89 ARG 90 ARG 91 LYS 92 VAL 93 VAL 94 ASP 95 ARG 96 MSE 97 ILE 98 ALA 99 ALA 100 GLN 101 ALA 102 LEU 103 ALA 104 HIS 105 ARG 106 ALA 107 THR 108 PHE 109 VAL 110 THR 111 PHE 112 ASN 113 ALA 114 ASP 115 ASP 116 PHE 117 ARG 118 ASP 119 ILE 120 PRO 121 GLY 122 LEU 123 SER 124 LEU 125 LEU 126 ALA 127 TRP 128
Unit 3	ALA 2 TYR 3 VAL 4 LEU 5 ASP 6 THR 7 ASN 8 VAL 9 ALA 10 ILE 11 HIS 12 LEU 13 ARG 14 ASP 15 GLY 16 ASP 17 PRO 18 GLU 19 VAL 20 THR 21 THR 22 ARG 23 VAL 24 THR 25 ALA 26 LEU 27 ASN 28 GLY 29 ALA 30 ILE 31 LEU 32 LEU 33 SER 34 ILE 35 ILE 36 SER 37 ARG 38 VAL 39 GLU 40 LEU 41 GLU 42 GLY 43 GLY 44 VAL 45 TYR 46 ARG 47 GLU 48 ALA 49 ALA 50 GLN 51 ALA 52 GLY 53 LEU 54 ARG 55 ARG 56 SER 57 ARG 58 LEU 59 ASP 60 VAL 61 MSE 62 LEU 63 LYS 64 VAL 65 LEU 66 PRO 67 VAL 68 LEU 69 ASP 70 PHE 71 ASP 72 GLY 73 ALA 74 ALA 75 ALA 76 ASP 77 GLU 78 TYR 79 ARG 80 ARG 81 ILE 82 VAL 83 GLU 84 SER 85 ALA 86 GLY 87 TYR 88 SER 89 ARG 90 ARG 91 LYS 92 VAL 93 VAL 94 ASP 95 ARG 96 MSE 97 ILE 98 ALA 99 ALA 100 GLN 101 ALA 102 LEU 103 ALA 104 HIS 105 ARG 106 ALA 107 THR 108 PHE 109 VAL 110 THR 111 PHE 112 ASN 113 ALA 114 ASP 115 ASP 116 PHE 117 ARG 118 ASP 119 ILE 120 PRO 121 GLY 122 LEU 123 SER 124 LEU 125 LEU 126 ALA 127 TRP 128
Unit 4	HIS -4 HIS -3 HIS -2 HIS -1 HIS 0 HIS 1 ALA 2 ARG 3 ALA 4 THR 5 GLY 6 LYS 7 THR 8 PHE 9 ARG 10 SER 11 GLY 12 ASN 13 SER 14 GLU 15 ALA 16 VAL 17 ARG 18 LEU 19 PRO 20 ARG 21 ASP 22 LEU 23 ALA 24 PHE 25 GLY 26 ALA 27 ASP 28 VAL 29 GLU 30 LEU 31 THR 32 LEU 33 ILE 34 ARG 35 SER 36 GLY 37 ASP 38 VAL 39 LEU 40 THR 41 ILE 42 TYR 43 PRO 44 SER 45 LYS 46 GLY 47 SER 48 ILE 49 ALA 50 ASP 51 LEU 52 VAL 53 ALA 54 THR 55 LEU 56 ASN 57 GLN 58 MSE 59 PRO 60 ARG 61 PRO 62 ASP 63 SER 64 VAL 65 GLU 66 ILE 67 ARG 68 ASP 69 GLU 70 ASP 71 LEU 72 PHE 73 PRO 74 GLU 75 ARG 76 PRO 77 GLY 78 LEU 79
Unit 5	HIS 0 HIS 1 ALA 2 ARG 3 ALA 4 THR 5 GLY 6 LYS 7 THR 8 PHE 9 ARG 10 SER 11 GLY 12 ASN 13 SER 14 GLU 15 ALA 16 VAL 17 ARG 18 LEU 19 PRO 20 ARG 21 ASP 22 LEU 23 ALA 24 PHE 25 GLY 26 ALA 27 ASP 28 VAL 29 GLU 30 LEU 31 THR 32 LEU 33 ILE 34 ARG 35 SER 36 GLY 37 ASP 38 VAL 39 LEU 40 THR 41 ILE 42 TYR 43 PRO 44 SER 45 LYS 46 GLY 47 SER 48 ILE 49 ALA 50 ASP 51 LEU 52 VAL 53 ALA 54 THR 55 LEU 56 ASN 57 GLN 58 MSE 59 PRO 60 ARG 61 PRO 62 ASP 63
Unit 6	ALA 2 TYR 3 VAL 4 LEU 5 ASP 6 THR 7 ASN 8 VAL 9 ALA 10 ILE 11 HIS 12 LEU 13 ARG 14 ASP 15 GLY 16 ASP 17 PRO 18 GLU 19 VAL 20 THR 21 THR 22 ARG 23 VAL 24 THR 25 ALA 26 LEU 27 ASN 28 GLY 29 ALA 30 ILE 31 LEU 32 LEU 33 SER 34 ILE 35 ILE 36 SER 37 ARG 38 VAL 39 GLU 40 LEU 41 GLU 42 GLY 43 GLY 44 VAL 45 TYR 46 ARG 47 GLU 48 ALA 49 ALA 50 GLN 51 ALA 52 GLY 53 LEU 54 ARG 55 ARG 56 SER 57 ARG 58 LEU 59 ASP 60 VAL 61 MSE 62 LEU 63 LYS 64 VAL 65 LEU 66 PRO 67 VAL 68 LEU 69 ASP 70 PHE 71 ASP 72 GLY 73 ALA 74 ALA 75 ALA 76 ASP 77 GLU 78 TYR 79 ARG 80 ARG 81 ILE 82 VAL 83 GLU 84 SER 85 ALA 86 GLY 87 TYR 88 SER 89 ARG 90 ARG 91 LYS 92 VAL 93 VAL 94 ASP 95 ARG 96 MSE 97 ILE 98 ALA 99 ALA 100 GLN 101 ALA 102 LEU 103 ALA 104 HIS 105 ARG 106 ALA 107 THR 108 PHE 109 VAL 110 THR 111 PHE 112 ASN 113 ALA 114 ASP 115 ASP 116 PHE 117 ARG 118 ASP 119 ILE 120 PRO 121 GLY 122 LEU 123 SER 124 LEU 125 LEU 126 ALA 127 TRP 128
Unit 7	ALA 2 TYR 3 VAL 4 LEU 5 ASP 6 THR 7 ASN 8 VAL 9 ALA 10 ILE 11 HIS 12 LEU 13 ARG 14 ASP 15 GLY 16 ASP 17 PRO 18 GLU 19 VAL 20 THR 21 THR 22 ARG 23 VAL 24 THR 25 ALA 26 LEU 27 ASN 28 GLY 29 ALA 30 ILE 31 LEU 32 LEU 33 SER 34 ILE 35 ILE 36 SER 37 ARG 38 VAL 39 GLU 40 LEU 41 GLU 42 GLY 43 GLY 44 VAL 45 TYR 46 ARG 47 GLU 48 ALA 49 ALA 50 GLN 51 ALA 52 GLY 53 LEU 54 ARG 55 ARG 56 SER 57 ARG 58 LEU 59 ASP 60 VAL 61 MSE 62 LEU 63 LYS 64 VAL 65 LEU 66 PRO 67 VAL 68 LEU 69 ASP 70 PHE 71 ASP 72 GLY 73 ALA 74 ALA 75 ALA 76 ASP 77 GLU 78 TYR 79 ARG 80 ARG 81 ILE 82 VAL 83 GLU 84 SER 85 ALA 86 GLY 87 TYR 88 SER 89 ARG 90 ARG 91 LYS 92 VAL 93 VAL 94 ASP 95 ARG 96 MSE 97 ILE 98 ALA 99 ALA 100 GLN 101 ALA 102 LEU 103 ALA 104 HIS 105 ARG 106 ALA 107 THR 108 PHE 109 VAL 110 THR 111 PHE 112 ASN 113 ALA 114 ASP 115 ASP 116 PHE 117 ARG 118 ASP 119 ILE 120 PRO 121 GLY 122 LEU 123 SER 124 LEU 125 LEU 126 ALA 127 TRP 128
Unit 8	HIS -2 HIS -1 HIS 0 HIS 1 ALA 2 ARG 3 ALA 4 THR 5 GLY 6 LYS 7 THR 8 PHE 9 ARG 10 SER 11 GLY 12 ASN 13 SER 14 GLU 15 ALA 16 VAL 17 ARG 18 LEU 19 PRO 20 ARG 21 ASP 22 LEU 23 ALA 24 PHE 25 GLY 26 ALA 27 ASP 28 VAL 29 GLU 30 LEU 31 THR 32 LEU 33 ILE 34 ARG 35 SER 36 GLY 37 ASP 38 VAL 39 LEU 40 THR 41 ILE 42 TYR 43 PRO 44 SER 45 LYS 46 GLY 47 SER 48 ILE 49 ALA 50 ASP 51 LEU 52 VAL 53 ALA 54 THR 55 LEU 56 ASN 57 GLN 58 MSE 59 PRO 60 ARG 61 PRO 62 ASP 63 SER 64 VAL 65 GLU 66 ILE 67 ARG 68 ASP 69 GLU 70 ASP 71 LEU 72 PHE 73 PRO 74 GLU 75 ARG 76 PRO 77 GLY 78

Other macromolecules

Unit 9	DC 1 DT 2 DC 3 DC 4 DG 5 DT 6 DC 7 DA 8 DA 9 DT 10 DA 11 DT 12 DG 13 DC 14 DG 15 DT 16 DA 17 DT 18 DA 19 DT 20 DA 21 DC 22 DG 23 DT 24 DT 25 DC 26 DC 27
Unit 10	DG 1 DG 2 DA 3 DA 4 DC 5 DG 6 DT 7 DA 8 DT 9 DA 10 DT 11 DA 12 DC 13 DG 14 DC 15 DA 16 DT 17 DA 18 DT 19 DT 20 DG 21 DA 22 DC 23 DG 24 DG 25 DA 26 DG 27