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Sequence, Chains, Asymmetric and Biological Units

Title PLEXIN A1 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 10, TO 6 A SPACEGROUP P4(3)2(1)2
Keywords RECEPTOR, SIGNALING, AXON GUIDANCE, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5L5C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PLEXIN-A1  A 1171 9085 0
2  Ligand    B 4 0 50
3  Ligand    C 5 0 61
4  Ligand    D 4 0 50
5  Ligand    E 6 0 72
6  Ligand    F 2 0 28
7  Ligand    G 5 0 61
8  Ligand    H 3 0 39
9  Ligand    I 6 0 72
10  Ligand   PLEXIN-A1  A 2 0 28
total       1208 9085 461
Proteins
Unit 1 PRO37 ALA38 PHE39 ARG40 THR41 PHE42 VAL43 ALA44 SER45 ASP46 TRP47 GLY48 LEU49 THR50 HIS51 LEU52 VAL53 VAL54 HIS55 GLU56 GLN57 THR58 GLY59 GLU60 VAL61 TYR62 VAL63 GLY64 ALA65 VAL66 ASN67 ARG68 ILE69 TYR70 LYS71 LEU72 SER73 GLY74 ASN75 LEU76 THR77 LEU78 LEU79 ARG80 ALA81 HIS82 VAL83 THR84 GLY85 PRO86 VAL87 GLU88 ASP89 ASN90 GLU91 LYS92 CYS93 TYR94 PRO95 PRO96 PRO97 SER98 VAL99 GLN100 SER101 CYS102 PRO103 HIS104 GLY105 LEU106 GLY107 SER108 THR109 ASP110 ASN111 VAL112 ASN113 LYS114 LEU115 LEU116 LEU117 LEU118 ASP119 TYR120 ALA121 ALA122 ASN123 ARG124 LEU125 LEU126 ALA127 CYS128 GLY129 SER130 ALA131 SER132 GLN133 GLY134 ILE135 CYS136 GLN137 PHE138 LEU139 ARG140 LEU141 ASP142 ASP143 LEU144 PHE145 LYS146 LEU147 GLY148 GLU149 PRO150 HIS151 HIS152 ARG153 LYS154 GLU155 HIS156 TYR157 LEU158 SER159 SER160 VAL161 ARG162 GLU163 ALA164 GLY165 SER166 MET167 ALA168 GLY169 VAL170 LEU171 ILE172 ALA173 GLY174 PRO175 PRO176 GLY177 GLN178 GLY179 GLN180 ALA181 LYS182 LEU183 PHE184 VAL185 GLY186 THR187 PRO188 ILE189 ASP190 GLY191 LYS192 SER193 GLU194 TYR195 PHE196 PRO197 THR198 LEU199 SER200 SER201 ARG202 ARG203 LEU204 MET205 ALA206 ASN207 GLU208 GLU209 ASP210 ALA211 ASP212 MET213 PHE214 GLY215 PHE216 VAL217 TYR218 GLN219 ASP220 GLU221 PHE222 VAL223 SER224 SER225 GLN226 LEU227 LYS228 ILE229 PRO230 SER231 ASP232 THR233 LEU234 SER235 LYS236 PHE237 PRO238 ALA239 PHE240 ASP241 ILE242 TYR243 TYR244 VAL245 TYR246 SER247 PHE248 ARG249 SER250 GLU251 GLN252 PHE253 VAL254 TYR255 TYR256 LEU257 THR258 LEU259 GLN260 LEU261 ASP262 THR263 GLN264 LEU265 ALA271 GLY272 GLU273 HIS274 PHE275 PHE276 THR277 SER278 LYS279 ILE280 VAL281 ARG282 LEU283 CYS284 VAL285 ASN286 ASP287 PRO288 LYS289 PHE290 TYR291 SER292 TYR293 VAL294 GLU295 PHE296 PRO297 ILE298 GLY299 CYS300 GLU301 GLN302 ALA303 GLY304 VAL305 GLU306 TYR307 ARG308 LEU309 VAL310 GLN311 ASP312 ALA313 TYR314 LEU315 SER316 ARG317 PRO318 GLY319 GLN320 ALA321 LEU322 ALA323 LYS324 GLN325 LEU326 GLY327 LEU328 ALA329 GLU330 ASP331 GLU332 GLU333 VAL334 LEU335 PHE336 THR337 VAL338 PHE339 ALA340 GLN341 GLY342 GLN343 LYS344 ASN345 ARG346 VAL347 LYS348 PRO349 PRO350 LYS351 GLU352 SER353 ALA354 LEU355 CYS356 LEU357 PHE358 THR359 LEU360 ARG361 ALA362 ILE363 LYS364 GLU365 LYS366 ILE367 LYS368 GLU369 ARG370 ILE371 GLN372 SER373 CYS374 TYR375 ARG376 GLY377 GLU378 GLY379 LYS380 LEU381 SER382 LEU383 PRO384 TRP385 LEU386 LEU387 ASN388 LYS389 GLU390 LEU391 GLY392 CYS393 ILE394 ASN395 SER396 PRO397 LEU398 GLN399 ILE400 ASP401 ASP402 ASP403 PHE404 CYS405 GLY406 GLN407 ASP408 PHE409 ASN410 GLN411 PRO412 LEU413 GLY414 GLY415 THR416 VAL417 THR418 ILE419 GLU420 GLY421 THR422 PRO423 LEU424 PHE425 VAL426 ASP427 LYS428 GLU429 ASP430 GLY431 LEU432 THR433 ALA434 VAL435 ALA436 ALA437 TYR438 ASP439 TYR440 GLN441 GLY442 ARG443 THR444 VAL445 VAL446 PHE447 ALA448 GLY449 THR450 ARG451 SER452 GLY453 ARG454 ILE455 ARG456 LYS457 ILE458 LEU459 VAL460 ASP461 LEU462 ALA463 ASN464 PRO465 SER466 GLY467 ARG468 PRO469 ALA470 LEU471 ALA472 TYR473 GLU474 SER475 VAL476 VAL477 ALA478 GLN479 GLU480 GLY481 ASN482 PRO483 ILE484 LEU485 ARG486 ASP487 LEU488 VAL489 LEU490 SER491 PRO492 ASN493 ARG494 GLN495 TYR496 LEU497 TYR498 ALA499 MET500 THR501 GLU502 LYS503 GLN504 VAL505 THR506 GLN507 VAL508 PRO509 VAL510 GLU511 SER512 CYS513 VAL514 GLN515 TYR516 THR517 SER518 CYS519 GLU520 LEU521 CYS522 LEU523 GLY524 SER525 ARG526 ASP527 PRO528 HIS529 CYS530 GLY531 TRP532 CYS533 VAL534 LEU535 HIS536 SER537 ILE538 CYS539 SER540 ARG541 GLN542 ASP543 ALA544 CYS545 GLU546 ARG547 ALA548 GLU549 GLU550 PRO551 GLN552 ARG553 PHE554 ALA555 SER556 ASP557 LEU558 LEU559 GLN560 CYS561 VAL562 GLN563 LEU564 THR565 VAL566 GLN567 PRO568 ARG569 ASN570 VAL571 SER572 VAL573 THR574 MET575 SER576 GLN577 VAL578 PRO579 LEU580 VAL581 LEU582 GLN583 ALA584 TRP585 ASN586 VAL587 PRO588 ASP589 LEU590 SER591 ALA592 GLY593 VAL594 ASN595 CYS596 SER597 PHE598 GLU599 ASP600 PHE601 THR602 GLU603 THR604 GLU605 SER606 ILE607 LEU608 GLU609 ASP610 GLY611 ARG612 ILE613 HIS614 CYS615 HIS616 SER617 PRO618 SER619 ALA620 ARG621 GLU622 VAL623 ALA624 PRO625 ILE626 THR627 GLN628 GLY629 GLN630 GLY631 ASP632 GLN633 ARG634 VAL635 VAL636 LYS637 LEU638 TYR639 LEU640 LYS641 SER642 LYS643 GLU644 THR645 GLY646 LYS647 LYS648 PHE649 ALA650 SER651 VAL652 ASP653 PHE654 VAL655 PHE656 TYR657 ASN658 CYS659 SER660 VAL661 HIS662 GLN663 SER664 CYS665 LEU666 ALA667 CYS668 VAL669 ASN670 GLY671 SER672 PHE673 PRO674 CYS675 HIS676 TRP677 CYS678 LYS679 TYR680 ARG681 HIS682 VAL683 CYS684 THR685 ASN686 ASN687 ALA688 ALA689 ASP690 CYS691 ALA692 PHE693 LEU694 GLU695 GLY696 ARG697 VAL698 ASN699 MET700 SER701 GLU702 ASP703 CYS704 PRO705 GLN706 ILE707 LEU708 PRO709 SER710 THR711 HIS712 ILE713 TYR714 VAL715 PRO716 VAL717 GLY718 VAL719 VAL720 LYS721 PRO722 ILE723 THR724 LEU725 ALA726 ALA727 ARG728 ASN729 LEU730 PRO731 GLN732 PRO733 GLN734 SER735 GLY736 GLN737 ARG738 GLY739 TYR740 GLU741 CYS742 LEU743 PHE744 HIS745 ILE746 PRO747 GLY748 SER749 PRO750 ALA751 ARG752 VAL753 THR754 ALA755 LEU756 ARG757 PHE758 ASN759 SER760 SER761 SER762 LEU763 GLN764 CYS765 GLN766 ASN767 SER768 SER769 TYR770 SER771 TYR772 GLU773 GLY774 ASN775 ASP776 VAL777 SER778 ASP779 LEU780 PRO781 VAL782 ASN783 LEU784 SER785 VAL786 VAL787 TRP788 ASN789 GLY790 ASN791 PHE792 VAL793 ILE794 ASP795 ASN796 PRO797 GLN798 ASN799 ILE800 GLN801 ALA802 HIS803 LEU804 TYR805 LYS806 CYS807 PRO808 ALA809 LEU810 ARG811 GLN812 SER813 CYS814 GLY815 LEU816 CYS817 LEU818 LYS819 ALA820 ASP821 PRO822 ARG823 PHE824 GLU825 CYS826 GLY827 TRP828 CYS829 VAL830 ALA831 GLU832 ARG833 ARG834 CYS835 SER836 LEU837 ARG838 HIS839 HIS840 CYS841 PRO842 ALA843 ASP844 SER845 PRO846 ALA847 SER848 TRP849 MET850 HIS851 ALA852 HIS853 HIS854 GLY855 SER856 SER857 ARG858 CYS859 THR860 ASP861 PRO862 LYS863 ILE864 LEU865 LYS866 LEU867 SER868 PRO869 GLU870 THR871 GLY872 PRO873 ARG874 GLN875 GLY876 GLY877 THR878 ARG879 LEU880 THR881 ILE882 THR883 GLY884 GLU885 ASN886 LEU887 GLY888 LEU889 ARG890 PHE891 GLU892 ASP893 VAL894 ARG895 LEU896 GLY897 VAL898 HIS899 VAL900 GLY901 LYS902 VAL903 LEU904 CYS905 SER906 PRO907 VAL908 GLU909 SER910 GLU911 TYR912 ILE913 SER914 ALA915 GLU916 GLN917 ILE918 VAL919 CYS920 GLU921 ILE922 GLY923 ASP924 ALA925 SER926 THR927 LEU928 ARG929 ALA930 HIS931 ASP932 ALA933 LEU934 VAL935 GLU936 VAL937 CYS938 VAL939 ARG940 ASP941 CYS942 SER943 LEU944 HIS945 TYR946 ARG947 ALA948 LEU949 SER950 PRO951 LYS952 ARG953 PHE954 THR955 PHE956 VAL957 THR958 PRO959 THR960 PHE961 TYR962 ARG963 VAL964 SER965 PRO966 SER967 ARG968 GLY969 PRO970 LEU971 SER972 GLY973 GLY974 THR975 TRP976 ILE977 GLY978 ILE979 GLU980 GLY981 SER982 HIS983 LEU984 ASN985 ALA986 GLY987 SER988 ASP989 VAL990 ALA991 VAL992 SER993 ILE994 GLY995 GLY996 ARG997 PRO998 CYS999 SER1000 PHE1001 SER1002 TRP1003 ARG1004 ASN1005 SER1006 ARG1007 GLU1008 ILE1009 ARG1010 CYS1011 LEU1012 THR1013 PRO1014 PRO1015 GLY1016 HIS1017 THR1018 PRO1019 GLY1020 SER1021 ALA1022 PRO1023 ILE1024 VAL1025 ILE1026 ASN1027 ILE1028 ASN1029 ARG1030 ALA1031 GLN1032 LEU1033 SER1034 ASN1035 PRO1036 GLU1037 VAL1038 LYS1039 TYR1040 ASN1041 TYR1042 THR1043 GLU1044 ASP1045 PRO1046 THR1047 ILE1048 LEU1049 ARG1050 ILE1051 ASP1052 PRO1053 GLU1054 TRP1055 SER1056 ILE1057 ASN1058 SER1059 GLY1060 GLY1061 THR1062 LEU1063 LEU1064 THR1065 VAL1066 THR1067 GLY1068 THR1069 ASN1070 LEU1071 ALA1072 THR1073 VAL1074 ARG1075 GLU1076 PRO1077 ARG1078 ILE1079 ARG1080 ALA1081 LYS1082 TYR1083 GLY1084 GLY1085 ILE1086 GLU1087 ARG1088 GLU1089 ASN1090 SER1091 CYS1092 MET1093 VAL1094 TYR1095 ASN1096 ASP1097 THR1098 THR1099 MET1100 VAL1101 CYS1102 ARG1103 ALA1104 PRO1105 SER1106 ILE1107 ASP1108 ASN1109 PRO1110 LYS1111 ARG1112 SER1113 PRO1114 PRO1115 GLU1116 LEU1117 GLY1118 GLU1119 ARG1120 PRO1121 ASP1122 GLU1123 ILE1124 GLY1125 PHE1126 ILE1127 MET1128 ASP1129 ASN1130 VAL1131 ARG1132 THR1133 LEU1134 LEU1135 VAL1136 LEU1137 ASN1138 SER1139 SER1140 SER1141 PHE1142 LEU1143 TYR1144 TYR1145 PRO1146 ASP1147 PRO1148 VAL1149 LEU1150 GLU1151 PRO1152 LEU1153 SER1164 SER1165 PRO1166 LEU1167 ILE1168 LEU1169 LYS1170 GLY1171 ARG1172 ASN1173 LEU1174 LEU1175 PRO1176 PRO1177 ALA1178 PRO1179 GLY1180 ASN1181 SER1182 ARG1183 LEU1184 ASN1185 TYR1186 THR1187 VAL1188 LEU1189 ILE1190 GLY1191 SER1192 THR1193 PRO1194 CYS1195 ILE1196 LEU1197 THR1198 VAL1199 SER1200 GLU1201 THR1202 GLN1203 LEU1204 LEU1205 CYS1206 GLU1207 ALA1208 PRO1209 ASN1210 LYS1216 VAL1217 THR1218 VAL1219 ARG1220 ALA1221 GLY1222 GLY1223 PHE1224 GLU1225 PHE1226 SER1227
Ligands
Unit 2 NAG1 NAG2 BMA3 MAN4
Unit 3 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 4 NAG1 NAG2 BMA3 MAN4
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 10 NAG1327 NAG1331
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany