5L2X - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN PRIMPOL TERNARY COMPLEX
• Keywords: PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5L2X	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN	A	271	2137	0
2	DNA		C	12	221	20
3	Other macromolecule	DNA (5'-D(P*GP*GP*TP*AP*GP*CP*(DDG))-3')	D	7	126	21
4	Protein	DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN	B	251	2010	0
5	DNA		G	8	139	20
6	Other macromolecule	DNA (5'-D(P*GP*GP*TP*AP*GP*CP*(DDG))-3')	H	7	126	21
7	Ligand	DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN	A	2	0	31
8	Ligand	DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN	B	2	0	31
9	Water			98	0	98
total				658	4759	242

Proteins

Unit 1

MET 1 ASN 2 ARG 3 LYS 4 TRP 5 GLU 6 ALA 7 LYS 8 LEU 9 LYS 10 GLN 11 ILE 12 GLU 13 GLU 14 ARG 15 ALA 16 SER 17 PRO 35 GLU 36 GLU 37 PRO 38 PRO 39 SER 40 ILE 41 TRP 42 ARG 43 LEU 44 PHE 45 HIS 46 ARG 47 GLN 48 ALA 49 GLN 50 ALA 51 PHE 52 ASN 53 PHE 54 VAL 55 LYS 56 SER 57 CYS 58 LYS 59 GLU 60 ASP 61 VAL 62 HIS 63 VAL 64 PHE 65 ALA 66 LEU 67 GLU 68 CYS 69 LYS 70 VAL 71 GLY 72 ASP 73 GLY 74 GLN 75 ARG 76 ILE 77 TYR 78 LEU 79 VAL 80 THR 81 THR 82 TYR 83 ALA 84 GLU 85 PHE 86 TRP 87 PHE 88 TYR 89 TYR 90 LYS 91 SER 92 ARG 93 LYS 94 ASN 95 LEU 96 LEU 97 HIS 98 CYS 99 TYR 100 GLU 101 VAL 102 ILE 103 PRO 104 GLU 105 ASN 106 ALA 107 VAL 108 CYS 109 LYS 110 LEU 111 TYR 112 PHE 113 ASP 114 LEU 115 GLU 116 PHE 117 ASN 118 LYS 119 PRO 120 ALA 121 ASN 122 PRO 123 GLY 124 ALA 125 ASP 126 GLY 127 LYS 128 LYS 129 MET 130 VAL 131 ALA 132 LEU 133 LEU 134 ILE 135 GLU 136 TYR 137 VAL 138 CYS 139 LYS 140 ALA 141 LEU 142 GLN 143 GLU 144 LEU 145 TYR 146 GLY 147 VAL 148 ASN 149 CYS 150 SER 151 ALA 152 GLU 153 ASP 154 VAL 155 LEU 156 ASN 157 LEU 158 ASP 159 SER 160 SER 161 THR 162 ASP 163 GLU 164 LYS 165 PHE 166 SER 167 ARG 168 HIS 169 LEU 170 ILE 171 PHE 172 GLN 173 LEU 174 HIS 175 ASP 176 VAL 177 ALA 178 PHE 179 LYS 180 ASP 181 ASN 182 ILE 183 HIS 184 VAL 185 GLY 186 ASN 187 PHE 188 LEU 189 ARG 190 LYS 191 ILE 192 LEU 193 GLN 194 PRO 195 ALA 196 LEU 197 ASP 198 LEU 199 LEU 200 PRO 261 ASP 262 LEU 263 SER 264 PHE 265 LEU 266 VAL 267 VAL 268 LYS 269 ASN 270 ASN 271 MET 272 GLY 273 GLU 274 LYS 275 HIS 276 LEU 277 PHE 278 VAL 279 ASP 280 LEU 281 GLY 282 VAL 283 TYR 284 THR 285 ARG 286 ASN 287 ARG 288 ASN 289 PHE 290 ARG 291 LEU 292 TYR 293 LYS 294 SER 295 SER 296 LYS 297 ILE 298 GLY 299 LYS 300 ARG 301 VAL 302 ALA 303 LEU 304 GLU 305 VAL 306 THR 307 GLU 308 ASP 309 ASN 310 LYS 311 PHE 312 PHE 313 PRO 314 ILE 315 GLN 316 SER 317 LYS 318 ASP 319 VAL 320 SER 321 ASP 322 GLU 323 TYR 324 GLN 325 TYR 326 PHE 327 LEU 328 SER 329 SER 330 LEU 331 VAL 332 SER 333 ASN 334 VAL 335 ARG 336 PHE 337 SER 338 ASP 339 THR 340 LEU 341 ARG 342 ILE 343 LEU 344 THR 345 CYS 346 GLU 347 PRO 348

Unit 4

PRO 38 PRO 39 SER 40 ILE 41 TRP 42 ARG 43 LEU 44 PHE 45 HIS 46 ARG 47 GLN 48 ALA 49 GLN 50 ALA 51 PHE 52 ASN 53 PHE 54 VAL 55 LYS 56 SER 57 CYS 58 LYS 59 GLU 60 ASP 61 VAL 62 HIS 63 VAL 64 PHE 65 ALA 66 LEU 67 GLU 68 CYS 69 LYS 70 VAL 71 GLY 72 ASP 73 GLY 74 GLN 75 ARG 76 ILE 77 TYR 78 LEU 79 VAL 80 THR 81 THR 82 TYR 83 ALA 84 GLU 85 PHE 86 TRP 87 PHE 88 TYR 89 TYR 90 LYS 91 SER 92 ARG 93 LYS 94 ASN 95 LEU 96 LEU 97 HIS 98 CYS 99 TYR 100 GLU 101 VAL 102 ILE 103 PRO 104 GLU 105 ASN 106 ALA 107 VAL 108 CYS 109 LYS 110 LEU 111 TYR 112 PHE 113 ASP 114 LEU 115 GLU 116 PHE 117 ASN 118 LYS 119 PRO 120 ALA 121 ASN 122 PRO 123 GLY 124 ALA 125 ASP 126 GLY 127 LYS 128 LYS 129 MET 130 VAL 131 ALA 132 LEU 133 LEU 134 ILE 135 GLU 136 TYR 137 VAL 138 CYS 139 LYS 140 ALA 141 LEU 142 GLN 143 GLU 144 LEU 145 TYR 146 GLY 147 VAL 148 ASN 149 CYS 150 SER 151 ALA 152 GLU 153 ASP 154 VAL 155 LEU 156 ASN 157 LEU 158 ASP 159 SER 160 SER 161 THR 162 ASP 163 GLU 164 LYS 165 PHE 166 SER 167 ARG 168 HIS 169 LEU 170 ILE 171 PHE 172 GLN 173 LEU 174 HIS 175 ASP 176 VAL 177 ALA 178 PHE 179 LYS 180 ASP 181 ASN 182 ILE 183 HIS 184 VAL 185 GLY 186 ASN 187 PHE 188 LEU 189 ARG 190 LYS 191 ILE 192 LEU 193 GLN 194 PRO 195 ALA 196 LEU 197 ASP 198 LEU 199 LEU 200 PRO 261 ASP 262 LEU 263 SER 264 PHE 265 LEU 266 VAL 267 VAL 268 LYS 269 ASN 270 ASN 271 MET 272 GLY 273 GLU 274 LYS 275 HIS 276 LEU 277 PHE 278 VAL 279 ASP 280 LEU 281 GLY 282 VAL 283 TYR 284 THR 285 ARG 286 ASN 287 ARG 288 ASN 289 PHE 290 ARG 291 LEU 292 TYR 293 LYS 294 SER 295 SER 296 LYS 297 ILE 298 GLY 299 LYS 300 ARG 301 VAL 302 ALA 303 LEU 304 GLU 305 VAL 306 THR 307 GLU 308 ASP 309 ASN 310 LYS 311 PHE 312 PHE 313 PRO 314 ILE 315 GLN 316 SER 317 LYS 318 ASP 319 VAL 320 SER 321 ASP 322 GLU 323 TYR 324 GLN 325 TYR 326 PHE 327 LEU 328 SER 329 SER 330 LEU 331 VAL 332 SER 333 ASN 334 VAL 335 ARG 336 PHE 337 SER 338 ASP 339 THR 340 LEU 341 ARG 342 ILE 343 LEU 344 THR 345 CYS 346 GLU 347 PRO 348

Nucleic acids

Unit 2	DA 2 DT 3 DC 4 DG 5 DC 6 5IU 7 DA 8 DC 9 DC 10 DA 11 DC 12 DA 13
Unit 5	DT 3 DC 4 DG 5 DC 6 5IU 7 DA 8 DC 9 DC 10

Other macromolecules

Unit 3	DG 8 DG 9 DT 10 DA 11 DG 12 DC 13 DDG 14
Unit 6	DG 8 DG 9 DT 10 DA 11 DG 12 DC 13 DDG 14

Ligands

Unit 7	DTP 401 CA 402
Unit 8	DTP 401 CA 402