5L2K - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF GEM42 TCR-CD1B-GMM COMPLEX
• Keywords: CD1B, LIPID, TB, MTB, GMM, TUBERCULOSIS, GEM T CELL, TCR, T GEM42, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5L2K	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	T-CELL SURFACE GLYCOPROTEIN CD1B	A	276	2155	0
2	Protein	BETA-2-MICROGLOBULIN	B	98	820	0
3	Protein	GEM42 TCR ALPHA CHAIN	D	185	1442	0
4	Protein	GEM42 TCR BETA CHAIN	E	242	1916	0
5	Ligand	T-CELL SURFACE GLYCOPROTEIN CD1B	A	11	0	87
6	Ligand	BETA-2-MICROGLOBULIN	B	1	0	1
7	Ligand	GEM42 TCR ALPHA CHAIN	D	2	0	6
8	Ligand	GEM42 TCR BETA CHAIN	E	3	0	56
9	Water			6	0	6
total				824	6333	156

Proteins

Unit 1	PHE 4 GLN 5 GLY 6 PRO 7 THR 8 SER 9 PHE 10 HIS 11 VAL 12 ILE 13 GLN 14 THR 15 SER 16 SER 17 PHE 18 THR 19 ASN 20 SER 21 THR 22 TRP 23 ALA 24 GLN 25 THR 26 GLN 27 GLY 28 SER 29 GLY 30 TRP 31 LEU 32 ASP 33 ASP 34 LEU 35 GLN 36 ILE 37 HIS 38 GLY 39 TRP 40 ASP 41 SER 42 ASP 43 SER 44 GLY 45 THR 46 ALA 47 ILE 48 PHE 49 LEU 50 LYS 51 PRO 52 TRP 53 SER 54 LYS 55 GLY 56 ASN 57 PHE 58 SER 59 ASP 60 LYS 61 GLU 62 VAL 63 ALA 64 GLU 65 LEU 66 GLU 67 GLU 68 ILE 69 PHE 70 ARG 71 VAL 72 TYR 73 ILE 74 PHE 75 GLY 76 PHE 77 ALA 78 ARG 79 GLU 80 VAL 81 GLN 82 ASP 83 PHE 84 ALA 85 GLY 86 ASP 87 PHE 88 GLN 89 MET 90 LYS 91 TYR 92 PRO 93 PHE 94 GLU 95 ILE 96 GLN 97 GLY 98 ILE 99 ALA 100 GLY 101 CYS 102 GLU 103 LEU 104 HIS 105 SER 106 GLY 107 GLY 108 ALA 109 ILE 110 VAL 111 SER 112 PHE 113 LEU 114 ARG 115 GLY 116 ALA 117 LEU 118 GLY 119 GLY 120 LEU 121 ASP 122 PHE 123 LEU 124 SER 125 VAL 126 LYS 127 ASN 128 ALA 129 SER 130 CYS 131 VAL 132 PRO 133 SER 134 PRO 135 GLU 136 GLY 137 GLY 138 SER 139 ARG 140 ALA 141 GLN 142 LYS 143 PHE 144 CYS 145 ALA 146 LEU 147 ILE 148 ILE 149 GLN 150 TYR 151 GLN 152 GLY 153 ILE 154 MET 155 GLU 156 THR 157 VAL 158 ARG 159 ALA 160 LEU 161 LEU 162 TYR 163 GLU 164 THR 165 CYS 166 PRO 167 ARG 168 TYR 169 LEU 170 LEU 171 GLY 172 VAL 173 LEU 174 ASN 175 ALA 176 GLY 177 LYS 178 ALA 179 ASP 180 LEU 181 GLN 182 ARG 183 GLN 184 VAL 185 LYS 186 PRO 187 GLU 188 ALA 189 TRP 190 LEU 191 SER 192 SER 193 GLY 194 PRO 195 SER 196 PRO 197 GLY 198 PRO 199 GLY 200 ARG 201 LEU 202 GLN 203 LEU 204 VAL 205 CYS 206 HIS 207 VAL 208 SER 209 GLY 210 PHE 211 TYR 212 PRO 213 LYS 214 PRO 215 VAL 216 TRP 217 VAL 218 MET 219 TRP 220 MET 221 ARG 222 GLY 223 GLU 224 GLN 225 GLU 226 GLN 227 GLN 228 GLY 229 THR 230 GLN 231 LEU 232 GLY 233 ASP 234 ILE 235 LEU 236 PRO 237 ASN 238 ALA 239 ASN 240 TRP 241 THR 242 TRP 243 TYR 244 LEU 245 ARG 246 ALA 247 THR 248 LEU 249 ASP 250 VAL 251 ALA 252 ASP 253 GLY 254 GLU 255 ALA 256 ALA 257 GLY 258 LEU 259 SER 260 CYS 261 ARG 262 VAL 263 LYS 264 HIS 265 SER 266 SER 267 LEU 268 GLU 269 GLY 270 GLN 271 ASP 272 ILE 273 ILE 274 LEU 275 TYR 276 TRP 277 ARG 278 GLY 279
Unit 2	ILE 3 GLN 4 ARG 5 THR 6 PRO 7 LYS 8 ILE 9 GLN 10 VAL 11 TYR 12 SER 13 ARG 14 HIS 15 PRO 16 ALA 17 GLU 18 ASN 19 GLY 20 LYS 21 SER 22 ASN 23 PHE 24 LEU 25 ASN 26 CYS 27 TYR 28 VAL 29 SER 30 GLY 31 PHE 32 HIS 33 PRO 34 SER 35 ASP 36 ILE 37 GLU 38 VAL 39 ASP 40 LEU 41 LEU 42 LYS 43 ASN 44 GLY 45 GLU 46 ARG 47 ILE 48 GLU 49 LYS 50 VAL 51 GLU 52 HIS 53 SER 54 ASP 55 LEU 56 SER 57 PHE 58 SER 59 LYS 60 ASP 61 TRP 62 SER 63 PHE 64 TYR 65 LEU 66 LEU 67 TYR 68 TYR 69 THR 70 GLU 71 PHE 72 THR 73 PRO 74 THR 75 GLU 76 LYS 77 ASP 78 GLU 79 TYR 80 ALA 81 CYS 82 ARG 83 VAL 84 ASN 85 HIS 86 VAL 87 THR 88 LEU 89 SER 90 GLN 91 PRO 92 LYS 93 ILE 94 VAL 95 LYS 96 TRP 97 ASP 98 ARG 99 ASP 100
Unit 3	GLY 1 GLN 2 ASN 3 ILE 4 ASP 5 GLN 6 PRO 8 THR 9 GLU 10 MET 11 THR 12 ALA 13 THR 14 GLU 15 GLY 16 ALA 17 ILE 18 VAL 19 GLN 20 ILE 21 ASN 22 CYS 23 THR 24 TYR 25 GLN 26 THR 27 SER 28 GLY 29 PHE 30 ASN 31 GLY 32 LEU 39 PHE 40 TRP 41 TYR 42 GLN 43 GLN 44 HIS 45 ALA 46 GLY 47 GLU 48 ALA 49 PRO 50 THR 51 PHE 52 LEU 53 SER 54 TYR 55 ASN 56 VAL 57 LEU 58 ASP 59 GLY 60 LEU 66 GLU 67 GLU 68 LYS 69 GLY 70 ARG 78 PHE 79 SER 80 SER 81 PHE 82 LEU 83 SER 84 ARG 84A SER 84B LYS 84C GLY 85 TYR 86 SER 87 TYR 88 LEU 89 LEU 90 LEU 91 LYS 92 GLU 93 LEU 94 GLN 95 MET 96 LYS 97 ASP 98 SER 99 ALA 100 SER 101 TYR 102 LEU 103 CYS 104 ALA 105 VAL 106 ARG 107 ASN 108 THR 110 GLY 111 GLY 112 PHE 113 LYS 114 THR 115 ILE 116 PHE 117 GLY 118 ALA 119 GLY 120 THR 121 ARG 122 LEU 123 PHE 124 VAL 125 LYS 126 ALA 127 ASN 128 ILE 129 GLN 130 ASN 131 PRO 132 ASP 133 PRO 134 ALA 135 VAL 136 TYR 137 GLN 138 LEU 139 ARG 140 ASP 141 SER 142 LYS 143 SER 144 SER 145 ASP 146 LYS 147 SER 148 VAL 149 CYS 150 LEU 151 PHE 152 THR 153 ASP 154 PHE 155 ASP 156 SER 157 GLN 158 THR 159 ASN 160 VAL 161 SER 162 GLN 163 SER 164 LYS 165 ASP 166 SER 167 ASP 168 VAL 169 TYR 170 ILE 171 THR 172 ASP 173 LYS 174 CYS 175 VAL 176 LEU 177 ASP 178 MET 179 ARG 180 SER 181 MET 182 ASP 183 PHE 184 LYS 185 SER 186 ASN 187 SER 188 ALA 189 VAL 190 ALA 191 TRP 192 SER 193 ASN 194 LYS 195 SER 196 ASP 197 PHE 198 ALA 199 CYS 200 ALA 201 ASN 202
Unit 4	ALA 2 GLY 3 VAL 4 THR 5 GLN 6 THR 7 PRO 8 LYS 9 PHE 10 ARG 11 VAL 12 LEU 13 LYS 14 THR 15 GLY 16 GLN 17 SER 18 MET 19 THR 20 LEU 21 LEU 22 CYS 23 ALA 24 GLN 25 ASP 26 MET 27 ASN 28 HIS 29 GLU 30 TYR 31 MET 39 TYR 40 TRP 41 TYR 42 ARG 43 GLN 44 ASP 45 PRO 46 GLY 47 MET 48 GLY 49 LEU 50 ARG 51 LEU 52 ILE 53 HIS 54 TYR 55 SER 56 VAL 57 GLY 58 GLU 59 GLY 60 THR 61 THR 66 ALA 67 LYS 68 GLY 69 GLU 70 VAL 71 PRO 72 ASP 74 GLY 75 TYR 76 ASN 77 VAL 78 SER 79 ARG 80 LEU 81 LYS 83 LYS 84 GLN 85 ASN 86 PHE 87 LEU 88 LEU 89 GLY 90 LEU 91 GLU 92 SER 93 ALA 94 ALA 95 PRO 96 SER 97 GLN 98 THR 99 SER 100 VAL 101 TYR 102 PHE 103 CYS 104 ALA 105 SER 106 SER 107 PRO 108 ARG 109 LEU 110 ALA 111 GLY 112 ASP 113 GLU 114 GLN 115 PHE 116 PHE 117 GLY 118 PRO 119 GLY 120 THR 121 ARG 122 LEU 123 THR 124 VAL 125 LEU 126 GLU 127 ASP 128 LEU 129 LYS 130 ASN 131 VAL 132 PHE 133 PRO 134 PRO 135 GLU 136 VAL 137 ALA 138 VAL 139 PHE 140 GLU 141 PRO 142 SER 143 GLU 144 ALA 145 GLU 146 ILE 147 SER 148 HIS 149 THR 150 GLN 151 LYS 152 ALA 153 THR 154 LEU 155 VAL 156 CYS 157 LEU 158 ALA 159 THR 160 GLY 161 PHE 162 TYR 163 PRO 164 ASP 165 HIS 166 VAL 167 GLU 168 LEU 169 SER 170 TRP 171 TRP 172 VAL 173 ASN 174 GLY 175 LYS 176 GLU 177 VAL 178 HIS 179 SER 180 GLY 181 VAL 182 CYS 183 THR 184 ASP 185 PRO 186 GLN 187 PRO 188 LEU 189 LYS 190 GLU 191 GLN 192 PRO 193 ALA 194 LEU 195 ASN 196 ASP 197 SER 198 ARG 199 TYR 200 ALA 201 LEU 202 SER 203 SER 204 ARG 205 LEU 206 ARG 207 VAL 208 SER 209 ALA 210 THR 211 PHE 212 TRP 213 GLN 214 ASN 215 PRO 216 ARG 217 ASN 218 HIS 219 PHE 220 ARG 221 CYS 222 GLN 223 VAL 224 GLN 225 PHE 226 TYR 227 GLY 228 LEU 229 SER 230 GLU 231 ASN 232 ASP 233 GLU 234 TRP 235 THR 236 GLN 237 ASP 238 ARG 239 ALA 240 LYS 241 PRO 242 VAL 243 THR 244 GLN 245 ILE 246 VAL 247 SER 248 ALA 249 GLU 250 ALA 251 TRP 252 GLY 253 ARG 254 ALA 255 ASP 256

Ligands

Unit 5	NAG 401 NAG 402 NAG 403 SO4 404 SO4 405 SO4 406 CL 407 CL 408 CL 409 NA 410 6UL 411
Unit 6	CL 201
Unit 7	SO4 301 CS 302
Unit 8	SO4 301 NA 302 70E 303