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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF CASP-8 TDED FILAMENT
Keywords CASP-8, FILAMENT, DED, DEATH DOMAIN, APOPTOSIS
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5L08     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CASPASE-8  A 181 1513 0
2  Protein   CASPASE-8  B 181 1513 0
3  Protein   CASPASE-8  C 181 1513 0
4  Protein   CASPASE-8  D 181 1513 0
5  Protein   CASPASE-8  E 181 1513 0
6  Protein   CASPASE-8  F 181 1513 0
7  Protein   CASPASE-8  G 181 1513 0
8  Protein   CASPASE-8  H 181 1513 0
9  Protein   CASPASE-8  I 181 1513 0
total       1629 13617 0

Proteins
Unit 1 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 2 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 3 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 4 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 5 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 6 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 7 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 8 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182
Unit 9 ASP2 PHE3 SER4 ARG5 ASN6 LEU7 TYR8 ASP9 ILE10 GLY11 GLU12 GLN13 LEU14 ASP15 SER16 GLU17 ASP18 LEU19 ALA20 SER21 LEU22 LYS23 PHE24 LEU25 SER26 LEU27 ASP28 TYR29 ILE30 PRO31 GLN32 ARG33 LYS34 GLN35 GLU36 PRO37 ILE38 LYS39 ASP40 ALA41 LEU42 MET43 LEU44 PHE45 GLN46 ARG47 LEU48 GLN49 GLU50 LYS51 ARG52 MET53 LEU54 GLU55 GLU56 SER57 ASN58 LEU59 SER60 PHE61 LEU62 LYS63 GLU64 LEU65 LEU66 PHE67 ARG68 ILE69 ASN70 ARG71 LEU72 ASP73 LEU74 LEU75 ILE76 THR77 TYR78 LEU79 ASN80 THR81 ARG82 LYS83 GLU84 GLU85 MET86 GLU87 ARG88 GLU89 LEU90 GLN91 THR92 PRO93 GLY94 ARG95 ALA96 GLN97 ILE98 SER99 ALA100 TYR101 ARG102 VAL103 MET104 LEU105 TYR106 GLN107 ILE108 SER109 GLU110 GLU111 VAL112 SER113 ARG114 SER115 GLU116 LEU117 ARG118 SER119 PHE120 LYS121 PHE122 LEU123 LEU124 GLN125 GLU126 GLU127 ILE128 SER129 LYS130 CYS131 LYS132 LEU133 ASP134 ASP135 ASP136 MET137 ASN138 LEU139 LEU140 ASP141 ILE142 PHE143 ILE144 GLU145 MET146 GLU147 LYS148 ARG149 VAL150 ILE151 LEU152 GLY153 GLU154 GLY155 LYS156 LEU157 ASP158 ILE159 LEU160 LYS161 ARG162 VAL163 CYS164 ALA165 GLN166 ILE167 ASN168 LYS169 SER170 LEU171 LEU172 LYS173 ILE174 ILE175 ASN176 ASP177 TYR178 GLU179 GLU180 PHE181 SER182

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany