5KKB - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF MOUSE GOLGI ALPHA-1,2-MANNOSIDASE IA AND MAN9GL COMPLEX
• Keywords: ALPHA/ALPHA BARREL, GOLGI APPARATUS, DEGLYCOSYLATION, GLYCAN SUBSTRATE ANALOG, SUGAR BINDING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5KKB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	469	3773	0
2	Protein		B	469	3773	0
3	Ligand		C	9	0	103
4	Ligand		D	9	0	103
5	Ligand		A	3	0	28
6	Ligand		B	4	0	34
7	Water			611	0	611
total				1574	7546	879

Proteins

Unit 1

VAL 176 ASP 177 PHE 178 LEU 179 PRO 180 PRO 181 VAL 182 GLY 183 VAL 184 GLU 185 ASN 186 ARG 187 GLU 188 PRO 189 ALA 190 ASP 191 ALA 192 THR 193 ILE 194 ARG 195 GLU 196 LYS 197 ARG 198 ALA 199 LYS 200 ILE 201 LYS 202 GLU 203 MET 204 MET 205 THR 206 HIS 207 ALA 208 TRP 209 ASN 210 ASN 211 TYR 212 LYS 213 ARG 214 TYR 215 ALA 216 TRP 217 GLY 218 LEU 219 ASN 220 GLU 221 LEU 222 LYS 223 PRO 224 ILE 225 SER 226 LYS 227 GLU 228 GLY 229 HIS 230 SER 231 SER 232 SER 233 LEU 234 PHE 235 GLY 236 ASN 237 ILE 238 LYS 239 GLY 240 ALA 241 THR 242 ILE 243 VAL 244 ASP 245 ALA 246 LEU 247 ASP 248 THR 249 LEU 250 PHE 251 ILE 252 MET 253 GLY 254 MET 255 LYS 256 THR 257 GLU 258 PHE 259 GLN 260 GLU 261 ALA 262 LYS 263 SER 264 TRP 265 ILE 266 LYS 267 LYS 268 TYR 269 LEU 270 ASP 271 PHE 272 ASN 273 VAL 274 ASN 275 ALA 276 GLU 277 VAL 278 SER 279 VAL 280 PHE 281 GLU 282 VAL 283 ASN 284 ILE 285 ARG 286 PHE 287 VAL 288 GLY 289 GLY 290 LEU 291 LEU 292 SER 293 ALA 294 TYR 295 TYR 296 LEU 297 SER 298 GLY 299 GLU 300 GLU 301 ILE 302 PHE 303 ARG 304 LYS 305 LYS 306 ALA 307 VAL 308 GLU 309 LEU 310 GLY 311 VAL 312 LYS 313 LEU 314 LEU 315 PRO 316 ALA 317 PHE 318 HIS 319 THR 320 PRO 321 SER 322 GLY 323 ILE 324 PRO 325 TRP 326 ALA 327 LEU 328 LEU 329 ASN 330 MET 331 LYS 332 SER 333 GLY 334 ILE 335 GLY 336 ARG 337 ASN 338 TRP 339 PRO 340 TRP 341 ALA 342 SER 343 GLY 344 GLY 345 SER 346 SER 347 ILE 348 LEU 349 ALA 350 GLU 351 PHE 352 GLY 353 THR 354 LEU 355 HIS 356 LEU 357 GLU 358 PHE 359 MET 360 HIS 361 LEU 362 SER 363 HIS 364 LEU 365 SER 366 GLY 367 ASP 368 PRO 369 VAL 370 PHE 371 ALA 372 GLU 373 LYS 374 VAL 375 MET 376 LYS 377 ILE 378 ARG 379 THR 380 VAL 381 LEU 382 ASN 383 LYS 384 LEU 385 ASP 386 LYS 387 PRO 388 GLU 389 GLY 390 LEU 391 TYR 392 PRO 393 ASN 394 TYR 395 LEU 396 ASN 397 PRO 398 SER 399 SER 400 GLY 401 GLN 402 TRP 403 GLY 404 GLN 405 HIS 406 HIS 407 VAL 408 SER 409 VAL 410 GLY 411 GLY 412 LEU 413 GLY 414 ASP 415 SER 416 PHE 417 TYR 418 GLU 419 TYR 420 LEU 421 LEU 422 LYS 423 ALA 424 TRP 425 LEU 426 MET 427 SER 428 ASP 429 LYS 430 THR 431 ASP 432 LEU 433 GLU 434 ALA 435 LYS 436 LYS 437 MET 438 TYR 439 PHE 440 ASP 441 ALA 442 VAL 443 GLN 444 ALA 445 ILE 446 GLU 447 THR 448 HIS 449 LEU 450 ILE 451 ARG 452 LYS 453 SER 454 SER 455 GLY 456 GLY 457 LEU 458 THR 459 TYR 460 ILE 461 ALA 462 GLU 463 TRP 464 LYS 465 GLY 466 GLY 467 LEU 468 LEU 469 GLU 470 HIS 471 LYS 472 MET 473 GLY 474 HIS 475 LEU 476 THR 477 CYS 478 PHE 479 ALA 480 GLY 481 GLY 482 MET 483 PHE 484 ALA 485 LEU 486 GLY 487 ALA 488 ASP 489 GLY 490 ALA 491 PRO 492 GLU 493 ALA 494 ARG 495 ALA 496 GLN 497 HIS 498 TYR 499 LEU 500 GLU 501 LEU 502 GLY 503 ALA 504 GLU 505 ILE 506 ALA 507 ARG 508 THR 509 CYS 510 HIS 511 GLU 512 SER 513 TYR 514 ASN 515 ARG 516 THR 517 TYR 518 VAL 519 LYS 520 LEU 521 GLY 522 PRO 523 GLU 524 ALA 525 PHE 526 ARG 527 PHE 528 ASP 529 GLY 530 GLY 531 VAL 532 GLU 533 ALA 534 ILE 535 ALA 536 THR 537 ARG 538 GLN 539 ASN 540 GLU 541 LYS 542 TYR 543 TYR 544 ILE 545 LEU 546 ARG 547 PRO 548 GLU 549 VAL 550 ILE 551 GLU 552 THR 553 TYR 554 MET 555 TYR 556 MET 557 TRP 558 ARG 559 LEU 560 THR 561 HIS 562 ASP 563 PRO 564 LYS 565 TYR 566 ARG 567 THR 568 TRP 569 ALA 570 TRP 571 GLU 572 ALA 573 VAL 574 GLU 575 ALA 576 LEU 577 GLU 578 SER 579 HIS 580 CYS 581 ARG 582 VAL 583 ASN 584 GLY 585 GLY 586 TYR 587 SER 588 GLY 589 LEU 590 ARG 591 ASP 592 VAL 593 TYR 594 ILE 595 ALA 596 ARG 597 GLU 598 SER 599 TYR 600 ASP 601 ASP 602 VAL 603 GLN 604 GLN 605 SER 606 PHE 607 PHE 608 LEU 609 ALA 610 GLU 611 THR 612 LEU 613 LYS 614 TYR 615 LEU 616 TYR 617 LEU 618 ILE 619 PHE 620 SER 621 ASP 622 ASP 623 ASP 624 LEU 625 LEU 626 PRO 627 LEU 628 GLU 629 HIS 630 TRP 631 ILE 632 PHE 633 ASN 634 THR 635 GLU 636 ALA 637 HIS 638 PRO 639 PHE 640 PRO 641 ILE 642 LEU 643 ARG 644

Unit 2

VAL 176 ASP 177 PHE 178 LEU 179 PRO 180 PRO 181 VAL 182 GLY 183 VAL 184 GLU 185 ASN 186 ARG 187 GLU 188 PRO 189 ALA 190 ASP 191 ALA 192 THR 193 ILE 194 ARG 195 GLU 196 LYS 197 ARG 198 ALA 199 LYS 200 ILE 201 LYS 202 GLU 203 MET 204 MET 205 THR 206 HIS 207 ALA 208 TRP 209 ASN 210 ASN 211 TYR 212 LYS 213 ARG 214 TYR 215 ALA 216 TRP 217 GLY 218 LEU 219 ASN 220 GLU 221 LEU 222 LYS 223 PRO 224 ILE 225 SER 226 LYS 227 GLU 228 GLY 229 HIS 230 SER 231 SER 232 SER 233 LEU 234 PHE 235 GLY 236 ASN 237 ILE 238 LYS 239 GLY 240 ALA 241 THR 242 ILE 243 VAL 244 ASP 245 ALA 246 LEU 247 ASP 248 THR 249 LEU 250 PHE 251 ILE 252 MET 253 GLY 254 MET 255 LYS 256 THR 257 GLU 258 PHE 259 GLN 260 GLU 261 ALA 262 LYS 263 SER 264 TRP 265 ILE 266 LYS 267 LYS 268 TYR 269 LEU 270 ASP 271 PHE 272 ASN 273 VAL 274 ASN 275 ALA 276 GLU 277 VAL 278 SER 279 VAL 280 PHE 281 GLU 282 VAL 283 ASN 284 ILE 285 ARG 286 PHE 287 VAL 288 GLY 289 GLY 290 LEU 291 LEU 292 SER 293 ALA 294 TYR 295 TYR 296 LEU 297 SER 298 GLY 299 GLU 300 GLU 301 ILE 302 PHE 303 ARG 304 LYS 305 LYS 306 ALA 307 VAL 308 GLU 309 LEU 310 GLY 311 VAL 312 LYS 313 LEU 314 LEU 315 PRO 316 ALA 317 PHE 318 HIS 319 THR 320 PRO 321 SER 322 GLY 323 ILE 324 PRO 325 TRP 326 ALA 327 LEU 328 LEU 329 ASN 330 MET 331 LYS 332 SER 333 GLY 334 ILE 335 GLY 336 ARG 337 ASN 338 TRP 339 PRO 340 TRP 341 ALA 342 SER 343 GLY 344 GLY 345 SER 346 SER 347 ILE 348 LEU 349 ALA 350 GLU 351 PHE 352 GLY 353 THR 354 LEU 355 HIS 356 LEU 357 GLU 358 PHE 359 MET 360 HIS 361 LEU 362 SER 363 HIS 364 LEU 365 SER 366 GLY 367 ASP 368 PRO 369 VAL 370 PHE 371 ALA 372 GLU 373 LYS 374 VAL 375 MET 376 LYS 377 ILE 378 ARG 379 THR 380 VAL 381 LEU 382 ASN 383 LYS 384 LEU 385 ASP 386 LYS 387 PRO 388 GLU 389 GLY 390 LEU 391 TYR 392 PRO 393 ASN 394 TYR 395 LEU 396 ASN 397 PRO 398 SER 399 SER 400 GLY 401 GLN 402 TRP 403 GLY 404 GLN 405 HIS 406 HIS 407 VAL 408 SER 409 VAL 410 GLY 411 GLY 412 LEU 413 GLY 414 ASP 415 SER 416 PHE 417 TYR 418 GLU 419 TYR 420 LEU 421 LEU 422 LYS 423 ALA 424 TRP 425 LEU 426 MET 427 SER 428 ASP 429 LYS 430 THR 431 ASP 432 LEU 433 GLU 434 ALA 435 LYS 436 LYS 437 MET 438 TYR 439 PHE 440 ASP 441 ALA 442 VAL 443 GLN 444 ALA 445 ILE 446 GLU 447 THR 448 HIS 449 LEU 450 ILE 451 ARG 452 LYS 453 SER 454 SER 455 GLY 456 GLY 457 LEU 458 THR 459 TYR 460 ILE 461 ALA 462 GLU 463 TRP 464 LYS 465 GLY 466 GLY 467 LEU 468 LEU 469 GLU 470 HIS 471 LYS 472 MET 473 GLY 474 HIS 475 LEU 476 THR 477 CYS 478 PHE 479 ALA 480 GLY 481 GLY 482 MET 483 PHE 484 ALA 485 LEU 486 GLY 487 ALA 488 ASP 489 GLY 490 ALA 491 PRO 492 GLU 493 ALA 494 ARG 495 ALA 496 GLN 497 HIS 498 TYR 499 LEU 500 GLU 501 LEU 502 GLY 503 ALA 504 GLU 505 ILE 506 ALA 507 ARG 508 THR 509 CYS 510 HIS 511 GLU 512 SER 513 TYR 514 ASN 515 ARG 516 THR 517 TYR 518 VAL 519 LYS 520 LEU 521 GLY 522 PRO 523 GLU 524 ALA 525 PHE 526 ARG 527 PHE 528 ASP 529 GLY 530 GLY 531 VAL 532 GLU 533 ALA 534 ILE 535 ALA 536 THR 537 ARG 538 GLN 539 ASN 540 GLU 541 LYS 542 TYR 543 TYR 544 ILE 545 LEU 546 ARG 547 PRO 548 GLU 549 VAL 550 ILE 551 GLU 552 THR 553 TYR 554 MET 555 TYR 556 MET 557 TRP 558 ARG 559 LEU 560 THR 561 HIS 562 ASP 563 PRO 564 LYS 565 TYR 566 ARG 567 THR 568 TRP 569 ALA 570 TRP 571 GLU 572 ALA 573 VAL 574 GLU 575 ALA 576 LEU 577 GLU 578 SER 579 HIS 580 CYS 581 ARG 582 VAL 583 ASN 584 GLY 585 GLY 586 TYR 587 SER 588 GLY 589 LEU 590 ARG 591 ASP 592 VAL 593 TYR 594 ILE 595 ALA 596 ARG 597 GLU 598 SER 599 TYR 600 ASP 601 ASP 602 VAL 603 GLN 604 GLN 605 SER 606 PHE 607 PHE 608 LEU 609 ALA 610 GLU 611 THR 612 LEU 613 LYS 614 TYR 615 LEU 616 TYR 617 LEU 618 ILE 619 PHE 620 SER 621 ASP 622 ASP 623 ASP 624 LEU 625 LEU 626 PRO 627 LEU 628 GLU 629 HIS 630 TRP 631 ILE 632 PHE 633 ASN 634 THR 635 GLU 636 ALA 637 HIS 638 PRO 639 PHE 640 PRO 641 ILE 642 LEU 643 ARG 644

Ligands

Unit 3	NAG 1 BMA 2 MAN 3 MAN 4 MAN 5 MAN 6 MAN 7 MAN 8 MAN 9
Unit 4	NAG 1 BMA 2 MAN 3 MAN 4 MAN 5 MAN 6 MAN 7 MAN 8 MAN 9
Unit 5	NAG 710 LA 711 1PS 712
Unit 6	NAG 710 1PS 711 LA 712 BU1 713