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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE CA2+-BOUND SYNAPTOTAGMIN-1 SNARE COMPLEX (L CELL FORM) - FROM SYNCHROTRON DIFFRACTION
Keywords XFEL STRUCTURE, SYNAPTIC FUSION COMPLEX, SYNAPTOTAGMIN1, NEU SNARE COMPLEX, ENDOCYTOSIS, EXOCYTOSIS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5KJ8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VESICLE-ASSOCIATED MEMBRANE PROTEIN 3  A 63 502 0
2  Protein   SYNTAXIN-1A  B 66 512 0
3  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  C 74 575 0
4  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  D 63 488 0
5  Protein   SYNAPTOTAGMIN-1  E 279 2161 0
6  Protein   SYNAPTOTAGMIN-1  F 275 2064 0
7  Protein   VESICLE-ASSOCIATED MEMBRANE PROTEIN 3  G 63 492 0
8  Protein   SYNTAXIN-1A  H 65 510 0
9  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  I 74 549 0
10  Protein   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  J 63 496 0
11  Protein   SYNAPTOTAGMIN-1  K 279 2152 0
12  Ligand   SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  C 2 0 2
13  Ligand   SYNAPTOTAGMIN-1  E 4 0 4
14  Ligand   SYNAPTOTAGMIN-1  F 4 0 4
15  Ligand   SYNAPTOTAGMIN-1  K 4 0 4
total       1378 10501 14
Proteins
Unit 1 GLY27 SER28 ASN29 ARG30 ARG31 LEU32 GLN33 GLN34 THR35 GLN36 ALA37 GLN38 VAL39 ASP40 GLU41 VAL42 VAL43 ASP44 ILE45 MET46 ARG47 VAL48 ASN49 VAL50 ASP51 LYS52 VAL53 LEU54 GLU55 ARG56 ASP57 GLN58 LYS59 LEU60 SER61 GLU62 LEU63 ASP64 ASP65 ARG66 ALA67 ASP68 ALA69 LEU70 GLN71 ALA72 GLY73 ALA74 SER75 GLN76 PHE77 GLU78 THR79 SER80 ALA81 ALA82 LYS83 LEU84 LYS85 ARG86 LYS87 TYR88 TRP89
Unit 2 ALA191 LEU192 SER193 GLU194 ILE195 GLU196 THR197 ARG198 HIS199 SER200 GLU201 ILE202 ILE203 LYS204 LEU205 GLU206 ASN207 SER208 ILE209 ARG210 GLU211 LEU212 HIS213 ASP214 MET215 PHE216 MET217 ASP218 MET219 ALA220 MET221 LEU222 VAL223 GLU224 SER225 GLN226 GLY227 GLU228 MET229 ILE230 ASP231 ARG232 ILE233 GLU234 TYR235 ASN236 VAL237 GLU238 HIS239 ALA240 VAL241 ASP242 TYR243 VAL244 GLU245 ARG246 ALA247 VAL248 SER249 ASP250 THR251 LYS252 LYS253 ALA254 VAL255 LYS256
Unit 3 ASN9 GLU10 LEU11 GLU12 GLU13 MET14 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72 GLU73 ALA74 GLU75 LYS76 ASN77 LEU78 LYS79 ASP80 LEU81 GLY82
Unit 4 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197 ARG198 ALA199 THR200 LYS201 MET202 LEU203 GLY204
Unit 5 LYS141 LEU142 GLY143 LYS144 LEU145 GLN146 TYR147 SER148 LEU149 ASP150 TYR151 ASP152 PHE153 GLN154 ASN155 ASN156 GLN157 LEU158 LEU159 VAL160 GLY161 ILE162 ILE163 GLN164 ALA165 ALA166 GLU167 LEU168 PRO169 ALA170 LEU171 ASP172 MET173 GLY174 GLY175 THR176 SER177 ASP178 PRO179 TYR180 VAL181 LYS182 VAL183 PHE184 LEU185 LEU186 PRO187 ASP188 LYS189 LYS190 LYS191 LYS192 PHE193 GLU194 THR195 LYS196 VAL197 HIS198 ARG199 LYS200 THR201 LEU202 ASN203 PRO204 VAL205 PHE206 ASN207 GLU208 GLN209 PHE210 THR211 PHE212 LYS213 VAL214 PRO215 TYR216 SER217 GLU218 LEU219 GLY220 GLY221 LYS222 THR223 LEU224 VAL225 MET226 ALA227 VAL228 TYR229 ASP230 PHE231 ASP232 ARG233 PHE234 SER235 LYS236 HIS237 ASP238 ILE239 ILE240 GLY241 GLU242 PHE243 LYS244 VAL245 PRO246 MET247 ASN248 THR249 VAL250 ASP251 PHE252 GLY253 HIS254 VAL255 THR256 GLU257 GLU258 TRP259 ARG260 ASP261 LEU262 GLN263 SER264 ALA265 GLU266 LYS267 GLU268 GLU269 GLN270 GLU271 LYS272 LEU273 GLY274 ASP275 ILE276 CYS277 PHE278 SER279 LEU280 ARG281 TYR282 VAL283 PRO284 THR285 ALA286 GLY287 LYS288 LEU289 THR290 VAL291 VAL292 ILE293 LEU294 GLU295 ALA296 LYS297 ASN298 LEU299 LYS300 LYS301 MET302 ASP303 VAL304 GLY305 GLY306 LEU307 SER308 ASP309 PRO310 TYR311 VAL312 LYS313 ILE314 HIS315 LEU316 MET317 GLN318 ASN319 GLY320 LYS321 ARG322 LEU323 LYS324 LYS325 LYS326 LYS327 THR328 THR329 ILE330 LYS331 LYS332 ASN333 THR334 LEU335 ASN336 PRO337 TYR338 TYR339 ASN340 GLU341 SER342 PHE343 SER344 PHE345 GLU346 VAL347 PRO348 PHE349 GLU350 GLN351 ILE352 GLN353 LYS354 VAL355 GLN356 VAL357 VAL358 VAL359 THR360 VAL361 LEU362 ASP363 TYR364 ASP365 LYS366 ILE367 GLY368 LYS369 ASN370 ASP371 ALA372 ILE373 GLY374 LYS375 VAL376 PHE377 VAL378 GLY379 TYR380 ASN381 SER382 THR383 GLY384 ALA385 GLU386 LEU387 ARG388 HIS389 TRP390 SER391 ASP392 MET393 LEU394 ALA395 ASN396 PRO397 ARG398 ARG399 PRO400 ILE401 ALA402 GLN403 TRP404 HIS405 THR406 LEU407 GLN408 VAL409 GLU410 GLU411 GLU412 VAL413 ASP414 ALA415 MET416 LEU417 ALA418 VAL419
Unit 6 LYS141 LEU142 GLY143 LYS144 LEU145 GLN146 TYR147 SER148 LEU149 ASP150 TYR151 ASP152 PHE153 GLN154 ASN155 ASN156 GLN157 LEU158 LEU159 VAL160 GLY161 ILE162 ILE163 GLN164 ALA165 ALA166 GLU167 LEU168 PRO169 ALA170 LEU171 ASP172 MET173 GLY174 GLY175 THR176 SER177 ASP178 PRO179 TYR180 VAL181 LYS182 VAL183 PHE184 LEU185 LEU186 PRO187 ASP188 LYS189 LYS190 LYS191 LYS192 PHE193 GLU194 THR195 LYS196 VAL197 HIS198 ARG199 LYS200 THR201 LEU202 ASN203 PRO204 VAL205 PHE206 ASN207 GLU208 GLN209 PHE210 THR211 PHE212 LYS213 VAL214 PRO215 TYR216 SER217 GLU218 LEU219 GLY220 GLY221 LYS222 THR223 LEU224 VAL225 MET226 ALA227 VAL228 TYR229 ASP230 PHE231 ASP232 ARG233 PHE234 SER235 LYS236 HIS237 ASP238 ILE239 ILE240 GLY241 GLU242 PHE243 LYS244 VAL245 PRO246 MET247 ASN248 THR249 VAL250 ASP251 PHE252 GLY253 HIS254 VAL255 THR256 GLU257 GLU258 TRP259 ARG260 ASP261 LEU262 GLN263 SER264 ALA265 GLU266 LYS267 GLU268 GLU269 GLN270 LEU273 GLY274 ASP275 ILE276 CYS277 PHE278 SER279 LEU280 ARG281 TYR282 VAL283 PRO284 THR285 ALA286 GLY287 LYS288 LEU289 THR290 VAL291 VAL292 ILE293 LEU294 GLU295 ALA296 LYS297 ASN298 LEU299 LYS300 LYS301 MET302 ASP303 GLY306 LEU307 SER308 ASP309 PRO310 TYR311 VAL312 LYS313 ILE314 HIS315 LEU316 MET317 GLN318 ASN319 GLY320 LYS321 ARG322 LEU323 LYS324 LYS325 LYS326 LYS327 THR328 THR329 ILE330 LYS331 LYS332 ASN333 THR334 LEU335 ASN336 PRO337 TYR338 TYR339 ASN340 GLU341 SER342 PHE343 SER344 PHE345 GLU346 VAL347 PRO348 PHE349 GLU350 GLN351 ILE352 GLN353 LYS354 VAL355 GLN356 VAL357 VAL358 VAL359 THR360 VAL361 LEU362 ASP363 TYR364 ASP365 LYS366 ILE367 GLY368 LYS369 ASN370 ASP371 ALA372 ILE373 GLY374 LYS375 VAL376 PHE377 VAL378 GLY379 TYR380 ASN381 SER382 THR383 GLY384 ALA385 GLU386 LEU387 ARG388 HIS389 TRP390 SER391 ASP392 MET393 LEU394 ALA395 ASN396 PRO397 ARG398 ARG399 PRO400 ILE401 ALA402 GLN403 TRP404 HIS405 THR406 LEU407 GLN408 VAL409 GLU410 GLU411 GLU412 VAL413 ASP414 ALA415 MET416 LEU417 ALA418 VAL419
Unit 7 GLY27 SER28 ASN29 ARG30 ARG31 LEU32 GLN33 GLN34 THR35 GLN36 ALA37 GLN38 VAL39 ASP40 GLU41 VAL42 VAL43 ASP44 ILE45 MET46 ARG47 VAL48 ASN49 VAL50 ASP51 LYS52 VAL53 LEU54 GLU55 ARG56 ASP57 GLN58 LYS59 LEU60 SER61 GLU62 LEU63 ASP64 ASP65 ARG66 ALA67 ASP68 ALA69 LEU70 GLN71 ALA72 GLY73 ALA74 SER75 GLN76 PHE77 GLU78 THR79 SER80 ALA81 ALA82 LYS83 LEU84 LYS85 ARG86 LYS87 TYR88 TRP89
Unit 8 ALA191 LEU192 SER193 GLU194 ILE195 GLU196 THR197 ARG198 HIS199 SER200 GLU201 ILE202 ILE203 LYS204 LEU205 GLU206 ASN207 SER208 ILE209 ARG210 GLU211 LEU212 HIS213 ASP214 MET215 PHE216 MET217 ASP218 MET219 ALA220 MET221 LEU222 VAL223 GLU224 SER225 GLN226 GLY227 GLU228 MET229 ILE230 ASP231 ARG232 ILE233 GLU234 TYR235 ASN236 VAL237 GLU238 HIS239 ALA240 VAL241 ASP242 TYR243 VAL244 GLU245 ARG246 ALA247 VAL248 SER249 ASP250 THR251 LYS252 LYS253 ALA254 VAL255
Unit 9 GLU10 LEU11 GLU12 GLU13 MET14 GLN15 ARG16 ARG17 ALA18 ASP19 GLN20 LEU21 ALA22 ASP23 GLU24 SER25 LEU26 GLU27 SER28 THR29 ARG30 ARG31 MET32 LEU33 GLN34 LEU35 VAL36 GLU37 GLU38 SER39 LYS40 ASP41 ALA42 GLY43 ILE44 ARG45 THR46 LEU47 VAL48 MET49 LEU50 ASP51 GLU52 GLN53 GLY54 GLU55 GLN56 LEU57 ASP58 ARG59 VAL60 GLU61 GLU62 GLY63 MET64 ASN65 HIS66 ILE67 ASN68 GLN69 ASP70 MET71 LYS72 GLU73 ALA74 GLU75 LYS76 ASN77 LEU78 LYS79 ASP80 LEU81 GLY82 LYS83
Unit 10 ALA141 ARG142 GLU143 ASN144 GLU145 MET146 ASP147 GLU148 ASN149 LEU150 GLU151 GLN152 VAL153 SER154 GLY155 ILE156 ILE157 GLY158 ASN159 LEU160 ARG161 HIS162 MET163 ALA164 LEU165 ASP166 MET167 GLY168 ASN169 GLU170 ILE171 ASP172 THR173 GLN174 ASN175 ARG176 GLN177 ILE178 ASP179 ARG180 ILE181 MET182 GLU183 LYS184 ALA185 ASP186 SER187 ASN188 LYS189 THR190 ARG191 ILE192 ASP193 GLU194 ALA195 ASN196 GLN197 ARG198 ALA199 THR200 LYS201 MET202 LEU203
Unit 11 LYS141 LEU142 GLY143 LYS144 LEU145 GLN146 TYR147 SER148 LEU149 ASP150 TYR151 ASP152 PHE153 GLN154 ASN155 ASN156 GLN157 LEU158 LEU159 VAL160 GLY161 ILE162 ILE163 GLN164 ALA165 ALA166 GLU167 LEU168 PRO169 ALA170 LEU171 ASP172 MET173 GLY174 GLY175 THR176 SER177 ASP178 PRO179 TYR180 VAL181 LYS182 VAL183 PHE184 LEU185 LEU186 PRO187 ASP188 LYS189 LYS190 LYS191 LYS192 PHE193 GLU194 THR195 LYS196 VAL197 HIS198 ARG199 LYS200 THR201 LEU202 ASN203 PRO204 VAL205 PHE206 ASN207 GLU208 GLN209 PHE210 THR211 PHE212 LYS213 VAL214 PRO215 TYR216 SER217 GLU218 LEU219 GLY220 GLY221 LYS222 THR223 LEU224 VAL225 MET226 ALA227 VAL228 TYR229 ASP230 PHE231 ASP232 ARG233 PHE234 SER235 LYS236 HIS237 ASP238 ILE239 ILE240 GLY241 GLU242 PHE243 LYS244 VAL245 PRO246 MET247 ASN248 THR249 VAL250 ASP251 PHE252 GLY253 HIS254 VAL255 THR256 GLU257 GLU258 TRP259 ARG260 ASP261 LEU262 GLN263 SER264 ALA265 GLU266 LYS267 GLU268 GLU269 GLN270 GLU271 LYS272 LEU273 GLY274 ASP275 ILE276 CYS277 PHE278 SER279 LEU280 ARG281 TYR282 VAL283 PRO284 THR285 ALA286 GLY287 LYS288 LEU289 THR290 VAL291 VAL292 ILE293 LEU294 GLU295 ALA296 LYS297 ASN298 LEU299 LYS300 LYS301 MET302 ASP303 VAL304 GLY305 GLY306 LEU307 SER308 ASP309 PRO310 TYR311 VAL312 LYS313 ILE314 HIS315 LEU316 MET317 GLN318 ASN319 GLY320 LYS321 ARG322 LEU323 LYS324 LYS325 LYS326 LYS327 THR328 THR329 ILE330 LYS331 LYS332 ASN333 THR334 LEU335 ASN336 PRO337 TYR338 TYR339 ASN340 GLU341 SER342 PHE343 SER344 PHE345 GLU346 VAL347 PRO348 PHE349 GLU350 GLN351 ILE352 GLN353 LYS354 VAL355 GLN356 VAL357 VAL358 VAL359 THR360 VAL361 LEU362 ASP363 TYR364 ASP365 LYS366 ILE367 GLY368 LYS369 ASN370 ASP371 ALA372 ILE373 GLY374 LYS375 VAL376 PHE377 VAL378 GLY379 TYR380 ASN381 SER382 THR383 GLY384 ALA385 GLU386 LEU387 ARG388 HIS389 TRP390 SER391 ASP392 MET393 LEU394 ALA395 ASN396 PRO397 ARG398 ARG399 PRO400 ILE401 ALA402 GLN403 TRP404 HIS405 THR406 LEU407 GLN408 VAL409 GLU410 GLU411 GLU412 VAL413 ASP414 ALA415 MET416 LEU417 ALA418 VAL419
Ligands
Unit 12 CA101 CA102
Unit 13 CA501 CA502 CA503 CA504
Unit 14 CA501 CA502 CA503 CA504
Unit 15 CA501 CA502 CA503 CA504
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany