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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL IMPACT OF SINGLE RIBONUCLEOTIDES IN DNA
Keywords DNA, RNA, RIBONUCLEOTIDES
Experiment NMR
Number of Models  3


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5KIF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 9 287 0
2  Other macromolecule   DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3')  B 9 283 0
total       18 570 0

Nucleic acids
Unit 1 DA1 DT2 DC3 DC4 G5 DG6 DT7 DA8 DG9

Other macromolecules
Unit 2 DC10 DT11 DA12 DC13 DC14 DG15 DG16 DA17 DT18

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany