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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A PRIMATE APOBEC3G N-DOMAIN, IN COMPLEX SSDNA
Keywords APOBEC3G, VIF, HIV, APOBEC, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5K83     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  D 185 1551 0
2  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  C 191 1603 0
3  Other macromolecule   DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')  I 3 34 0
4  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  F 184 1543 0
5  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  E 191 1603 0
6  Other macromolecule   DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')  J 3 33 0
7  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  B 185 1551 0
8  Protein   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  A 191 1603 0
9  Other macromolecule   DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')  H 3 34 0
10  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  D 1 0 1
11  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  C 1 0 1
12  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  F 1 0 1
13  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  E 1 0 1
14  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  B 1 0 1
15  Ligand   APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC P LIKE 3G,APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEP 3G  A 1 0 1
16 Water     276 0 276
total       1418 9555 282
Proteins
Unit 1 ASN7 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Unit 2 MET1 LYS2 PRO3 GLN4 ILE5 ARG6 ASN7 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Unit 4 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Unit 5 MET1 LYS2 PRO3 GLN4 ILE5 ARG6 ASN7 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Unit 7 ASN7 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Unit 8 MET1 LYS2 PRO3 GLN4 ILE5 ARG6 ASN7 MET8 VAL9 GLU10 PRO11 MET12 ASP13 PRO14 ARG15 THR16 PHE17 VAL18 SER19 ASN20 PHE21 ASN22 ASN23 ARG24 PRO25 ILE26 LEU27 SER28 GLY29 LEU30 ASP31 THR32 VAL33 TRP34 LEU35 CYS36 CYS37 GLU38 VAL39 LYS40 THR41 LYS42 ASP43 PRO44 SER45 GLY46 PRO47 PRO48 LEU49 ASP50 ALA51 LYS52 ILE53 PHE54 GLN55 GLY56 LYS57 VAL58 TYR59 PRO60 LYS61 ALA62 LYS63 TYR64 HIS65 PRO66 GLU67 MET68 ARG69 PHE70 LEU71 ARG72 TRP73 PHE74 HIS75 LYS76 TRP77 ARG78 GLN79 LEU80 HIS81 HIS82 ASP83 GLN84 GLU85 TYR86 LYS87 VAL88 THR89 TRP90 TYR91 VAL92 SER93 TRP94 SER95 PRO96 CYS97 THR98 ARG99 CYS100 ALA101 ASN102 SER103 VAL104 ALA105 THR106 PHE107 LEU108 ALA109 LYS110 ASP111 PRO112 LYS113 VAL114 THR115 LEU116 THR117 ILE118 PHE119 VAL120 ALA121 ARG122 LEU123 TYR124 TYR125 PHE126 TRP127 LYS128 PRO129 ASP130 TYR131 GLN132 GLN133 ALA134 LEU135 ARG136 ILE137 LEU138 ALA143 GLU144 ALA145 GLY146 ALA147 THR148 MET149 LYS150 ILE151 MET152 ASN153 TYR154 ASN155 GLU156 PHE157 GLN158 ASP159 CYS160 TRP161 ASN162 LYS163 PHE164 VAL165 ASP166 GLY167 ARG168 GLY169 LYS170 PRO171 PHE172 LYS173 PRO174 TRP175 ASN176 ASN177 LEU178 PRO179 LYS180 HIS181 TYR182 THR183 LEU184 LEU185 GLN186 ALA187 THR188 LEU189 GLY190 GLU191 LEU192 LEU193 ARG194 HIS195
Other macromolecules
Unit 3 DT10 DT11 DT12
Unit 6 DT10 DT11 DT12
Unit 9 DT10 DT11 DT12
Ligands
Unit 10 ZN401
Unit 11 ZN401
Unit 12 ZN401
Unit 13 ZN401
Unit 14 ZN401
Unit 15 ZN401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany