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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF PISTOL RIBOZYME, SOAKED WITH MN2+
Keywords RIBOZYME, RNA STRUCTURE, PISTOL, RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5K7E     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 47 1001 0
2  RNA    B 11 236 0
3  Ligand   RNA 47-MER  A 2 0 2
4 Water     2 0 2
total       62 1237 4

Nucleic acids
Unit 1 C1 G2 U3 G4 G5 U6 U7 A8 G9 G10 G11 C12 C13 A14 C15 G16 U17 U18 A19 A20 A21 U22 A23 G24 U25 U26 G27 C28 U29 U30 A31 A32 G33 C34 C35 C36 U37 A38 A39 G40 C41 G42 U43 U44 G45 A46 U47
Unit 2 A48 U49 C50 A51 G52 DG53 U54 G55 C56 A57 A58

Ligands
Unit 3 MN101 MN102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany