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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE UAF1/WDR20/USP12 COMPLEX
Keywords WD40 REPEAT DOMAIN, WDR20, USP12, UAF1, WDR48, DEUBIQUITINAT ENZYME, UBIQUITIN-SPECIFIC PROTEASE, USP1-ASSOCIATED FACTOR HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5K1C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12  A 302 2374 0
2  Protein   WD REPEAT-CONTAINING PROTEIN 48  B 515 4001 0
3  Protein   WD REPEAT-CONTAINING PROTEIN 20  C 407 3166 0
4  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12  A 1 0 1
5  Ligand   WD REPEAT-CONTAINING PROTEIN 48  B 1 0 5
6  Ligand   WD REPEAT-CONTAINING PROTEIN 20  C 1 0 11
7 Water     75 0 75
total       1302 9541 92
Proteins
Unit 1 HIS37 TYR38 PHE39 GLY40 LEU41 VAL42 ASN43 PHE44 GLY45 ASN46 THR47 CYS48 TYR49 CYS50 ASN51 SER52 VAL53 LEU54 GLN55 ALA56 LEU57 TYR58 PHE59 CYS60 ARG61 PRO62 PHE63 ARG64 GLU65 LYS66 VAL67 LEU68 ALA69 TYR70 SER79 LEU80 LEU81 THR82 CYS83 LEU84 ALA85 ASP86 LEU87 PHE88 HIS89 SER90 ILE91 ALA92 THR93 GLN94 VAL100 ILE101 PRO102 PRO103 LYS104 LYS105 PHE106 ILE107 THR108 ARG109 LEU110 ARG111 LYS112 GLU113 ASN114 GLU115 LEU116 PHE117 ASP118 ASN119 TYR120 MET121 GLN122 GLN123 ASP124 ALA125 HIS126 GLU127 PHE128 LEU129 ASN130 TYR131 LEU132 LEU133 ASN134 THR135 ILE136 ALA137 ASP138 ILE139 LEU140 GLN141 GLU142 GLU143 ARG144 LYS145 GLN146 GLU147 PRO167 ASP168 PRO169 THR170 TRP171 VAL172 HIS173 GLU174 ILE175 PHE176 GLN177 GLY178 THR179 LEU180 THR181 ASN182 GLU183 THR184 ARG185 CYS186 LEU187 THR188 CYS189 GLU190 THR191 ILE192 SER193 SER194 LYS195 ASP196 GLU197 ASP198 PHE199 LEU200 ASP201 LEU202 SER203 VAL204 ASP205 VAL206 GLU207 GLN208 ASN209 THR210 SER211 ILE212 THR213 HIS214 CYS215 LEU216 ARG217 GLY218 PHE219 SER220 ASN221 THR222 GLU223 THR224 LEU225 CYS226 SER227 GLU228 TYR229 LYS230 TYR231 TYR232 CYS233 GLU234 GLU235 CYS236 ARG237 SER238 LYS239 GLN240 GLU241 ALA242 HIS243 LYS244 ARG245 MET246 LYS247 VAL248 LYS249 LYS250 LEU251 PRO252 MET253 ILE254 LEU255 ALA256 LEU257 HIS258 LEU259 LYS260 ARG261 PHE262 LYS263 TYR264 MET265 ASP266 GLN267 LEU268 HIS269 ARG270 TYR271 THR272 LYS273 LEU274 SER275 TYR276 ARG277 VAL278 VAL279 PHE280 PRO281 LEU282 GLU283 LEU284 ARG285 LEU286 PHE287 ASN288 THR289 SER290 GLY291 ASP292 ALA293 THR294 ASN295 PRO296 ASP297 ARG298 MET299 TYR300 ASP301 LEU302 VAL303 ALA304 VAL305 VAL306 VAL307 HIS308 CYS309 GLY310 SER311 GLY312 PRO313 ASN314 ARG315 GLY316 HIS317 TYR318 ILE319 ALA320 ILE321 VAL322 LYS323 SER324 HIS325 ASP326 PHE327 TRP328 LEU329 LEU330 PHE331 ASP332 ASP333 ASP334 ILE335 VAL336 GLU337 LYS338 ILE339 ASP340 ALA341 GLN342 ALA343 ILE344 GLU345 GLU346 PHE347 TYR348 GLY349 LEU350 THR351 SER352 ASP353 ILE354 SER355 LYS356 ASN357 SER358 GLU359 SER360 GLY361 TYR362 ILE363 LEU364 PHE365 TYR366 GLN367 SER368 ARG369 ASP370
Unit 2 LYS14 VAL15 GLN16 VAL17 SER18 TYR19 VAL20 ILE21 ARG22 ASP23 GLU24 VAL25 GLU26 LYS27 TYR28 ASN29 ARG30 ASN31 GLY32 VAL33 ASN34 ALA35 LEU36 GLN37 LEU38 ASP39 PRO40 ALA41 LEU42 ASN43 ARG44 LEU45 PHE46 THR47 ALA48 GLY49 ARG50 ASP51 SER52 ILE53 ILE54 ARG55 ILE56 TRP57 SER58 VAL59 ASN60 GLN61 HIS62 LYS63 GLN64 ASP65 PRO66 TYR67 ILE68 ALA69 SER70 MET71 GLU72 HIS73 HIS74 THR75 ASP76 TRP77 VAL78 ASN79 ASP80 ILE81 VAL82 LEU83 CYS84 CYS85 ASN86 GLY87 LYS88 THR89 LEU90 ILE91 SER92 ALA93 SER94 SER95 ASP96 THR97 THR98 VAL99 LYS100 VAL101 TRP102 ASN103 ALA104 HIS105 LYS106 GLY107 PHE108 CYS109 MET110 SER111 THR112 LEU113 ARG114 THR115 HIS116 LYS117 ASP118 TYR119 VAL120 LYS121 ALA122 LEU123 ALA124 TYR125 ALA126 LYS127 ASP128 LYS129 GLU130 LEU131 VAL132 ALA133 SER134 ALA135 GLY136 LEU137 ASP138 ARG139 GLN140 ILE141 PHE142 LEU143 TRP144 ASP145 VAL146 ASN147 THR148 LEU149 THR150 ALA151 LEU152 THR153 ALA154 SER155 ASN156 ASN157 THR158 VAL159 THR160 THR161 SER162 SER163 LEU164 SER165 GLY166 ASN167 LYS168 ASP169 SER170 ILE171 TYR172 SER173 LEU174 ALA175 MET176 ASN177 GLN178 LEU179 GLY180 THR181 ILE182 ILE183 VAL184 SER185 GLY186 SER187 THR188 GLU189 LYS190 VAL191 LEU192 ARG193 VAL194 TRP195 ASP196 PRO197 ARG198 THR199 CYS200 ALA201 LYS202 LEU203 MET204 LYS205 LEU206 LYS207 GLY208 HIS209 THR210 ASP211 ASN212 VAL213 LYS214 ALA215 LEU216 LEU217 LEU218 ASN219 ARG220 ASP221 GLY222 THR223 GLN224 CYS225 LEU226 SER227 GLY228 SER229 SER230 ASP231 GLY232 THR233 ILE234 ARG235 LEU236 TRP237 SER238 LEU239 GLY240 GLN241 GLN242 ARG243 CYS244 ILE245 ALA246 THR247 TYR248 ARG249 VAL250 HIS251 ASP252 GLU253 GLY254 VAL255 TRP256 ALA257 LEU258 GLN259 VAL260 ASN261 ASP262 ALA263 PHE264 THR265 HIS266 VAL267 TYR268 SER269 GLY270 GLY271 ARG272 ASP273 ARG274 LYS275 ILE276 TYR277 CYS278 THR279 ASP280 LEU281 ARG282 ASN283 PRO284 ASP285 ILE286 ARG287 VAL288 LEU289 ILE290 CYS291 GLU292 GLU293 LYS294 ALA295 PRO296 VAL297 LEU298 LYS299 MET300 GLU301 LEU302 ASP303 ARG304 SER305 ALA306 ASP307 PRO308 PRO309 PRO310 ALA311 ILE312 TRP313 VAL314 ALA315 THR316 THR317 LYS318 SER319 THR320 VAL321 ASN322 LYS323 TRP324 THR325 LEU326 LYS327 GLY328 ILE329 HIS330 ASN331 PHE332 ASN344 PRO345 ILE346 THR347 PRO348 LEU349 CYS350 THR351 GLN352 PRO353 ASP354 GLN355 VAL356 ILE357 LYS358 GLY359 GLY360 ALA361 SER362 ILE363 ILE364 GLN365 CYS366 HIS367 ILE368 LEU369 ASN370 ASP371 LYS372 ARG373 HIS374 ILE375 LEU376 THR377 LYS378 ASP379 THR380 ASN381 ASN382 ASN383 VAL384 ALA385 TYR386 TRP387 ASP388 VAL389 LEU390 LYS391 ALA392 CYS393 LYS394 VAL395 GLU396 ASP397 LEU398 GLY399 LYS400 VAL401 ASP402 PHE403 GLU404 ASP405 GLU406 ILE407 LYS408 LYS409 ARG410 PHE411 LYS412 MET413 VAL414 TYR415 VAL416 PRO417 ASN418 TRP419 PHE420 SER421 VAL422 ASP423 LEU424 LYS425 THR426 GLY427 MET428 LEU429 THR430 ILE431 THR432 LEU433 ASP434 GLU435 SER436 ASP437 CYS438 PHE439 ALA440 ALA441 TRP442 VAL443 SER444 ALA445 LYS446 ASP447 ALA448 GLY449 PHE450 SER451 SER452 PRO453 ASP454 GLY455 SER456 ASP457 PRO458 LYS459 LEU460 ASN461 LEU462 GLY463 GLY464 LEU465 LEU466 LEU467 GLN468 ALA469 LEU470 LEU471 GLU472 TYR473 TRP474 PRO475 ARG476 THR477 HIS478 GLU497 ASN498 GLN501 LYS502 GLY503 ASN504 GLY505 TYR506 PHE507 GLN508 VAL509 PRO510 PRO511 HIS512 THR513 PRO514 VAL515 ILE516 PHE517 GLY518 GLU519 ALA520 GLY521 GLY522 ARG523 THR524 LEU525 PHE526 ARG527 LEU528 LEU529 CYS530 ARG531 ASP532 SER533 GLY534 GLY535 GLU536 THR537 GLU538 SER539 MET540 LEU541 LEU542 ASN543 GLU544 THR545 VAL546 PRO547 GLN548 TRP549 VAL550 ILE551 ASP552 ILE553 THR554 VAL555 ASP556 LYS557 ASN558 MET559
Unit 3 MET1 ALA2 THR3 GLU4 GLY5 GLY6 GLY7 ASN11 GLU12 ILE13 LYS14 THR15 GLN16 PHE17 THR18 THR19 ARG20 GLU21 GLY22 LEU23 TYR24 LYS25 LEU26 LEU27 PRO28 HIS29 SER30 GLU31 TYR32 SER33 ARG34 PRO35 ASN36 ARG37 VAL38 PRO39 PHE40 ASN41 SER42 GLN43 GLY44 SER45 ASN46 PRO47 VAL48 ARG49 VAL50 SER51 PHE52 VAL53 ASN54 LEU55 ASN56 ASP57 GLN58 SER59 GLY60 ASN61 GLY62 ASP63 ARG64 LEU65 CYS66 PHE67 ASN68 VAL69 GLY70 ARG71 GLU72 LEU73 TYR74 PHE75 TYR76 ILE77 TYR78 LYS79 GLY80 VAL81 ARG82 LYS83 ALA84 ALA85 ASP86 LEU87 SER88 LYS89 PRO90 ILE91 ASP92 LYS93 ARG94 ILE95 TYR96 LYS97 GLY98 THR99 GLN100 PRO101 THR102 CYS103 HIS104 ASP105 PHE106 ASN107 HIS108 LEU109 THR110 ALA111 THR112 ALA113 GLU114 SER115 VAL116 SER117 LEU118 LEU119 VAL120 GLY121 PHE122 SER123 ALA124 GLY125 GLN126 VAL127 GLN128 LEU129 ILE130 ASP131 PRO132 ILE133 LYS134 LYS135 GLU136 THR137 SER138 LYS139 LEU140 PHE141 ASN142 GLU143 GLU144 ARG145 LEU146 ILE147 ASP148 LYS149 SER150 ARG151 VAL152 THR153 CYS154 VAL155 LYS156 TRP157 VAL158 PRO159 GLY160 SER161 GLU162 SER163 LEU164 PHE165 LEU166 VAL167 ALA168 HIS169 SER170 SER171 GLY172 ASN173 MET174 TYR175 LEU176 TYR177 ASN178 VAL179 GLU180 HIS181 THR182 CYS183 GLY184 THR185 THR186 ALA187 PRO188 HIS189 TYR190 GLN191 LEU192 LEU193 LYS194 GLN195 GLY196 GLU197 SER198 PHE199 ALA200 VAL201 HIS202 THR203 CYS204 LYS205 SER206 LYS207 SER208 THR209 ARG210 ASN211 PRO212 LEU213 LEU214 LYS215 TRP216 THR217 VAL218 GLY219 GLU220 GLY221 ALA222 LEU223 ASN224 GLU225 PHE226 ALA227 PHE228 SER229 PRO230 ASP231 GLY232 LYS233 PHE234 LEU235 ALA236 CYS237 VAL238 SER239 GLN240 ASP241 GLY242 PHE243 LEU244 ARG245 VAL246 PHE247 ASN248 PHE249 ASP250 SER251 VAL252 GLU253 LEU254 HIS255 GLY256 THR257 MET258 LYS259 SER260 TYR261 PHE262 GLY263 GLY264 LEU265 LEU266 CYS267 VAL268 CYS269 TRP270 SER271 PRO272 ASP273 GLY274 LYS275 TYR276 ILE277 VAL278 THR279 GLY280 GLY281 GLU282 ASP283 ASP284 LEU285 VAL286 THR287 VAL288 TRP289 SER290 PHE291 VAL292 ASP293 CYS294 ARG295 VAL296 ILE297 ALA298 ARG299 GLY300 HIS301 GLY302 HIS303 LYS304 SER305 TRP306 VAL307 SER308 VAL309 VAL310 ALA311 PHE312 ASP313 PRO314 TYR315 THR316 THR317 SER318 VAL363 SER364 VAL365 THR366 TYR367 ARG368 PHE369 GLY370 SER371 VAL372 GLY373 GLN374 ASP375 THR376 GLN377 LEU378 CYS379 LEU380 TRP381 ASP382 LEU383 THR384 GLU385 ASP386 ILE387 LEU388 PHE389 PRO390 HIS391 GLN392 PRO393 LEU394 LEU509 GLY510 THR511 PRO512 LEU513 CYS514 PRO515 ARG516 MET517 GLU518 ASP519 VAL520 PRO521 LEU522 LEU523 GLU524 PRO525 LEU526 ILE527 CYS528 LYS529 LYS530 ILE531 ALA532 HIS533 GLU534 ARG535 LEU536 THR537 VAL538 LEU539 ILE540 PHE541 LEU542 GLU543 ASP544 CYS545 ILE546 VAL547 THR548 ALA549 CYS550 GLN551 GLU552 GLY553 PHE554 ILE555 CYS556 THR557 TRP558 GLY559 ARG560 PRO561 GLY562 LYS563 VAL564 VAL565 SER566 PHE567 ASN568
Ligands
Unit 4 ZN401
Unit 5 PO4601
Unit 6 TAM601
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany