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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF GLUTAMATE DEHYDROGENASE AT 1.8 A RESOLU
Keywords GLUTAMATE DEHYDROGENASE, SMALL METABOLIC COMPLEX, OXIDOREDUC
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5K12     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  A 294 2295 0
2  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  B 294 2295 0
3  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  C 294 2295 0
4  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  D 294 2295 0
5  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  E 294 2295 0
6  Protein   GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL  F 294 2295 0
7 Water     1086 0 1086
total       2850 13770 1086
Proteins
Unit 1 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
Unit 2 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
Unit 3 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
Unit 4 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
Unit 5 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
Unit 6 LYS53 PRO54 CYS55 ASN56 HIS57 VAL58 LEU59 SER60 LEU61 SER62 PHE63 PRO64 ILE65 ARG66 ARG67 ASP68 ASP69 GLY70 SER71 TRP72 GLU73 VAL74 ILE75 GLU76 GLY77 TYR78 ARG79 ALA80 GLN81 HIS82 SER83 GLN84 HIS85 ARG86 THR87 PRO88 CYS89 LYS90 GLY91 GLY92 ILE93 ARG94 TYR95 SER96 THR97 ASP98 VAL99 SER100 VAL101 ASP102 GLU103 VAL104 LYS105 ALA106 LEU107 ALA108 SER109 LEU110 MET111 THR112 TYR113 LYS114 CYS115 ALA116 VAL117 VAL118 ASP119 VAL120 PRO121 PHE122 GLY123 GLY124 ALA125 LYS126 ALA127 GLY128 VAL129 LYS130 ILE131 ASN132 PRO133 LYS134 ASN135 TYR136 THR137 ASP138 ASN139 GLU140 LEU141 GLU142 LYS143 ILE144 THR145 ARG146 ARG147 PHE148 THR149 MET150 GLU151 LEU152 ALA153 LYS154 LYS155 GLY156 PHE157 ILE158 GLY159 PRO160 GLY161 VAL162 ASP163 VAL164 PRO165 ALA166 PRO167 ASP168 MET169 SER170 THR171 GLY172 GLU173 ARG174 GLU175 MET176 SER177 TRP178 ILE179 ALA180 ASP181 THR182 TYR183 ALA184 SER185 THR186 ILE187 GLY188 HIS189 TYR190 ASP191 ILE192 ASN193 ALA194 HIS195 ALA196 CYS197 VAL198 THR199 GLY200 LYS201 PRO202 ILE203 SER204 GLN205 GLY206 GLY207 ILE208 HIS209 GLY210 ARG211 ILE212 SER213 ALA214 THR215 GLY216 ARG217 GLY218 VAL219 PHE220 HIS221 GLY222 ILE223 GLU224 ASN225 PHE226 ASP370 LEU371 TYR372 LEU373 ASN374 ALA375 GLY376 GLY377 VAL378 THR379 VAL380 SER381 TYR382 PHE383 GLU384 TRP385 LEU386 LYS387 ASN388 LEU389 ASN390 HIS391 VAL392 SER393 TYR394 GLY395 ARG396 LEU397 THR398 PHE399 LYS400 TYR401 GLU402 ARG403 ASP404 SER405 ASN406 TYR407 HIS408 LEU409 LEU410 MET411 SER412 VAL413 GLN414 GLU415 SER416 LEU417 GLU418 ARG419 LYS420 PHE421 GLY422 LYS423 HIS424 GLY425 GLY426 THR427 ILE428 PRO429 ILE430 VAL431 PRO432 THR433 ALA434 GLU435 PHE436 GLN437 ASP438 ARG439 ILE440 SER441 GLY442 ALA443 SER444 GLU445 LYS446 ASP447 ILE448 VAL449 HIS450 SER451 GLY452 LEU453 ALA454 TYR455 THR456 MET457 GLU458 ARG459 SER460 ALA461 ARG462 GLN463 ILE464 MET465 ARG466 THR467 ALA468 MET469 LYS470 TYR471 ASN472 LEU473 GLY474 LEU475 ASP476 LEU477 ARG478 THR479 ALA480 ALA481 TYR482 VAL483 ASN484 ALA485 ILE486 GLU487 LYS488 VAL489
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany