5K11 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYO-EM STRUCTURE OF ISOCITRATE DEHYDROGENASE (IDH1) IN INHI BOUND STATE
• Keywords: ISOCITRATE DEHYDROGENASE, SMALL METABOLIC COMPLEX, SMALL MOL INHIBITOR, OXIDOREDUCTASE
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5K11	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC	A	397	3121	0
2	Protein	ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC	B	397	3121	0
3	Ligand	ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC	A	1	0	48
4	Ligand	ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC	B	1	0	48
total				796	6242	96

Proteins

Unit 1

LYS 3 LYS 4 ILE 5 SER 6 GLY 7 GLY 8 SER 9 VAL 10 VAL 11 GLU 12 MET 13 GLN 14 GLY 15 ASP 16 GLU 17 MET 18 THR 19 ARG 20 ILE 21 ILE 22 TRP 23 GLU 24 LEU 25 ILE 26 LYS 27 GLU 28 LYS 29 LEU 30 ILE 31 PHE 32 PRO 33 TYR 34 VAL 35 GLU 36 LEU 37 ASP 38 LEU 39 HIS 40 SER 41 TYR 42 ASP 43 LEU 44 GLY 45 ILE 46 GLU 47 ASN 48 ARG 49 ASP 50 ALA 51 THR 52 ASN 53 ASP 54 GLN 55 VAL 56 THR 57 LYS 58 ASP 59 ALA 60 ALA 61 GLU 62 ALA 63 ILE 64 LYS 65 LYS 66 HIS 67 ASN 68 VAL 69 GLY 70 VAL 71 LYS 72 CYS 73 ALA 74 THR 75 ILE 76 THR 77 PRO 78 ASP 79 GLU 80 LYS 81 ARG 82 VAL 83 GLU 84 GLU 85 PHE 86 LYS 87 LEU 88 LYS 89 GLN 90 MET 91 TRP 92 LYS 93 SER 94 PRO 95 ASN 96 GLY 97 THR 98 ILE 99 ARG 100 ASN 101 ILE 102 LEU 103 GLY 104 GLY 105 THR 106 VAL 107 PHE 108 ARG 109 GLU 110 ALA 111 ILE 112 ILE 113 CYS 114 LYS 115 ASN 116 ILE 117 PRO 118 ARG 119 LEU 120 VAL 121 SER 122 GLY 123 TRP 124 VAL 125 LYS 126 PRO 127 ILE 128 ILE 129 ILE 130 GLY 131 CYS 132 HIS 133 ALA 134 ARG 140 ALA 141 THR 142 ASP 143 PHE 144 VAL 145 VAL 146 PRO 147 GLY 148 PRO 149 GLY 150 LYS 151 VAL 152 GLU 153 ILE 154 THR 155 TYR 156 THR 157 PRO 158 SER 159 ASP 160 GLY 161 THR 162 GLN 163 LYS 164 VAL 165 THR 166 TYR 167 LEU 168 VAL 169 HIS 170 ASN 171 PHE 172 GLU 173 GLU 174 GLY 175 GLY 176 GLY 177 VAL 178 ALA 179 MET 180 GLY 181 MET 182 TYR 183 ASN 184 GLN 185 ASP 186 LYS 187 SER 188 ILE 189 GLU 190 ASP 191 PHE 192 ALA 193 HIS 194 SER 195 SER 196 PHE 197 GLN 198 MET 199 ALA 200 LEU 201 SER 202 LYS 203 GLY 204 TRP 205 PRO 206 LEU 207 TYR 208 LEU 209 SER 210 THR 211 LYS 212 ASN 213 THR 214 ILE 215 LEU 216 LYS 217 LYS 218 TYR 219 ASP 220 GLY 221 ARG 222 PHE 223 LYS 224 ASP 225 ILE 226 PHE 227 GLN 228 GLU 229 ILE 230 TYR 231 ASP 232 LYS 233 GLN 234 TYR 235 LYS 236 SER 237 GLN 238 PHE 239 GLU 240 ALA 241 GLN 242 LYS 243 ILE 244 TRP 245 TYR 246 GLU 247 HIS 248 ARG 249 LEU 250 ILE 251 ASP 252 ASP 253 MET 254 VAL 255 ALA 256 GLN 257 ALA 258 MET 259 LYS 260 SER 261 GLU 262 GLY 263 GLY 264 PHE 265 ILE 266 TRP 267 ALA 268 CYS 269 LYS 270 ASN 271 VAL 281 ALA 282 GLN 283 GLY 284 TYR 285 GLY 286 SER 287 LEU 288 GLY 289 MET 290 MET 291 THR 292 SER 293 VAL 294 LEU 295 VAL 296 CYS 297 PRO 298 ASP 299 GLY 300 LYS 301 THR 302 VAL 303 GLU 304 ALA 305 GLU 306 ALA 307 ALA 308 HIS 309 GLY 310 THR 311 VAL 312 THR 313 ARG 314 HIS 315 TYR 316 ARG 317 MET 318 TYR 319 GLN 320 LYS 321 GLY 322 GLN 323 GLU 324 THR 325 SER 326 THR 327 ASN 328 PRO 329 ILE 330 ALA 331 SER 332 ILE 333 PHE 334 ALA 335 TRP 336 THR 337 ARG 338 GLY 339 LEU 340 ALA 341 HIS 342 ARG 343 ALA 344 LYS 345 LEU 346 ASP 347 ASN 348 ASN 349 LYS 350 GLU 351 LEU 352 ALA 353 PHE 354 PHE 355 ALA 356 ASN 357 ALA 358 LEU 359 GLU 360 GLU 361 VAL 362 SER 363 ILE 364 GLU 365 THR 366 ILE 367 GLU 368 ALA 369 GLY 370 PHE 371 MET 372 THR 373 LYS 374 ASP 375 LEU 376 ALA 377 ALA 378 CYS 379 ILE 380 LYS 381 GLY 382 LEU 383 PRO 384 ASN 385 VAL 386 GLN 387 ARG 388 SER 389 ASP 390 TYR 391 LEU 392 ASN 393 THR 394 PHE 395 GLU 396 PHE 397 MET 398 ASP 399 LYS 400 LEU 401 GLY 402 GLU 403 ASN 404 LEU 405 LYS 406 ILE 407 LYS 408 LEU 409 ALA 410 GLN 411 ALA 412 LYS 413

Unit 2

LYS 3 LYS 4 ILE 5 SER 6 GLY 7 GLY 8 SER 9 VAL 10 VAL 11 GLU 12 MET 13 GLN 14 GLY 15 ASP 16 GLU 17 MET 18 THR 19 ARG 20 ILE 21 ILE 22 TRP 23 GLU 24 LEU 25 ILE 26 LYS 27 GLU 28 LYS 29 LEU 30 ILE 31 PHE 32 PRO 33 TYR 34 VAL 35 GLU 36 LEU 37 ASP 38 LEU 39 HIS 40 SER 41 TYR 42 ASP 43 LEU 44 GLY 45 ILE 46 GLU 47 ASN 48 ARG 49 ASP 50 ALA 51 THR 52 ASN 53 ASP 54 GLN 55 VAL 56 THR 57 LYS 58 ASP 59 ALA 60 ALA 61 GLU 62 ALA 63 ILE 64 LYS 65 LYS 66 HIS 67 ASN 68 VAL 69 GLY 70 VAL 71 LYS 72 CYS 73 ALA 74 THR 75 ILE 76 THR 77 PRO 78 ASP 79 GLU 80 LYS 81 ARG 82 VAL 83 GLU 84 GLU 85 PHE 86 LYS 87 LEU 88 LYS 89 GLN 90 MET 91 TRP 92 LYS 93 SER 94 PRO 95 ASN 96 GLY 97 THR 98 ILE 99 ARG 100 ASN 101 ILE 102 LEU 103 GLY 104 GLY 105 THR 106 VAL 107 PHE 108 ARG 109 GLU 110 ALA 111 ILE 112 ILE 113 CYS 114 LYS 115 ASN 116 ILE 117 PRO 118 ARG 119 LEU 120 VAL 121 SER 122 GLY 123 TRP 124 VAL 125 LYS 126 PRO 127 ILE 128 ILE 129 ILE 130 GLY 131 CYS 132 HIS 133 ALA 134 ARG 140 ALA 141 THR 142 ASP 143 PHE 144 VAL 145 VAL 146 PRO 147 GLY 148 PRO 149 GLY 150 LYS 151 VAL 152 GLU 153 ILE 154 THR 155 TYR 156 THR 157 PRO 158 SER 159 ASP 160 GLY 161 THR 162 GLN 163 LYS 164 VAL 165 THR 166 TYR 167 LEU 168 VAL 169 HIS 170 ASN 171 PHE 172 GLU 173 GLU 174 GLY 175 GLY 176 GLY 177 VAL 178 ALA 179 MET 180 GLY 181 MET 182 TYR 183 ASN 184 GLN 185 ASP 186 LYS 187 SER 188 ILE 189 GLU 190 ASP 191 PHE 192 ALA 193 HIS 194 SER 195 SER 196 PHE 197 GLN 198 MET 199 ALA 200 LEU 201 SER 202 LYS 203 GLY 204 TRP 205 PRO 206 LEU 207 TYR 208 LEU 209 SER 210 THR 211 LYS 212 ASN 213 THR 214 ILE 215 LEU 216 LYS 217 LYS 218 TYR 219 ASP 220 GLY 221 ARG 222 PHE 223 LYS 224 ASP 225 ILE 226 PHE 227 GLN 228 GLU 229 ILE 230 TYR 231 ASP 232 LYS 233 GLN 234 TYR 235 LYS 236 SER 237 GLN 238 PHE 239 GLU 240 ALA 241 GLN 242 LYS 243 ILE 244 TRP 245 TYR 246 GLU 247 HIS 248 ARG 249 LEU 250 ILE 251 ASP 252 ASP 253 MET 254 VAL 255 ALA 256 GLN 257 ALA 258 MET 259 LYS 260 SER 261 GLU 262 GLY 263 GLY 264 PHE 265 ILE 266 TRP 267 ALA 268 CYS 269 LYS 270 ASN 271 VAL 281 ALA 282 GLN 283 GLY 284 TYR 285 GLY 286 SER 287 LEU 288 GLY 289 MET 290 MET 291 THR 292 SER 293 VAL 294 LEU 295 VAL 296 CYS 297 PRO 298 ASP 299 GLY 300 LYS 301 THR 302 VAL 303 GLU 304 ALA 305 GLU 306 ALA 307 ALA 308 HIS 309 GLY 310 THR 311 VAL 312 THR 313 ARG 314 HIS 315 TYR 316 ARG 317 MET 318 TYR 319 GLN 320 LYS 321 GLY 322 GLN 323 GLU 324 THR 325 SER 326 THR 327 ASN 328 PRO 329 ILE 330 ALA 331 SER 332 ILE 333 PHE 334 ALA 335 TRP 336 THR 337 ARG 338 GLY 339 LEU 340 ALA 341 HIS 342 ARG 343 ALA 344 LYS 345 LEU 346 ASP 347 ASN 348 ASN 349 LYS 350 GLU 351 LEU 352 ALA 353 PHE 354 PHE 355 ALA 356 ASN 357 ALA 358 LEU 359 GLU 360 GLU 361 VAL 362 SER 363 ILE 364 GLU 365 THR 366 ILE 367 GLU 368 ALA 369 GLY 370 PHE 371 MET 372 THR 373 LYS 374 ASP 375 LEU 376 ALA 377 ALA 378 CYS 379 ILE 380 LYS 381 GLY 382 LEU 383 PRO 384 ASN 385 VAL 386 GLN 387 ARG 388 SER 389 ASP 390 TYR 391 LEU 392 ASN 393 THR 394 PHE 395 GLU 396 PHE 397 MET 398 ASP 399 LYS 400 LEU 401 GLY 402 GLU 403 ASN 404 LEU 405 LYS 406 ILE 407 LYS 408 LEU 409 ALA 410 GLN 411 ALA 412 LYS 413

Ligands

Unit 3	NDP 501
Unit 4	NDP 501