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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF LACTATE DEHYDROGENASE (LDH) IN INHIBITO STATE
Keywords LACTATE DEHYDROGENASE, SMALL METABOLIC COMPLEX, SMALL MOLECU INHIBITOR, OXIDOREDUCTASE
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5K0Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-LACTATE DEHYDROGENASE B CHAIN  A 317 2427 0
2  Protein   L-LACTATE DEHYDROGENASE B CHAIN  B 317 2427 0
3  Protein   L-LACTATE DEHYDROGENASE B CHAIN  C 317 2427 0
4  Protein   L-LACTATE DEHYDROGENASE B CHAIN  D 317 2427 0
5 Water     41 0 41
total       1309 9708 41
Proteins
Unit 1 ALA1 THR2 LEU3 LYS4 GLU5 LYS6 LEU7 ILE8 THR9 PRO10 VAL11 THR16 VAL17 PRO18 SER19 ASN20 LYS21 ILE22 THR23 VAL24 VAL25 GLY26 VAL27 GLY28 GLN29 VAL30 GLY31 MET32 ALA33 CYS34 ALA35 ILE36 SER37 ILE38 LEU39 GLY40 LYS41 GLY42 LEU43 CYS44 ASP45 GLU46 LEU47 ALA48 LEU49 VAL50 ASP51 VAL52 LEU53 GLU54 ASP55 LYS56 LEU57 LYS58 GLY59 GLU60 MET61 MET62 ASP63 LEU64 GLN65 HIS66 GLY67 SER68 LEU69 PHE70 LEU71 GLN72 THR73 HIS74 LYS75 ILE76 VAL77 ALA78 ASP79 LYS80 ASP81 TYR82 ALA83 VAL84 THR85 ALA86 ASN87 SER88 LYS89 ILE90 VAL91 VAL92 VAL93 THR94 ALA95 GLY96 VAL97 LEU108 VAL109 GLN110 ARG111 ASN112 VAL113 ASN114 VAL115 PHE116 LYS117 PHE118 ILE119 ILE120 PRO121 GLN122 ILE123 VAL124 LYS125 TYR126 SER127 PRO128 ASN129 CYS130 THR131 ILE132 LEU133 VAL134 VAL135 SER136 ASN137 PRO138 VAL139 ASP140 ILE141 LEU142 THR143 TYR144 VAL145 THR146 TRP147 LYS148 LEU149 SER150 GLY151 LEU152 PRO153 LYS154 HIS155 ARG156 VAL157 ILE158 GLY159 SER160 GLY161 CYS162 ASN163 LEU164 ASP165 THR166 ALA167 ARG168 PHE169 ARG170 TYR171 LEU172 MET173 ALA174 GLU175 ARG176 LEU177 GLY178 ILE179 HIS180 PRO181 THR182 SER183 CYS184 HIS185 GLY186 TRP187 ILE188 LEU189 GLY190 GLU191 HIS192 GLY193 ASP194 SER195 SER196 VAL197 ALA198 VAL199 TRP200 SER201 GLY202 VAL203 ASN204 VAL205 ALA206 GLY207 VAL208 SER209 LEU210 GLN211 GLU212 LEU213 ASN214 PRO215 ALA216 MET217 GLY218 THR219 ASP220 LYS221 ASP222 SER223 GLU224 ASN225 TRP226 LYS227 GLU228 VAL229 HIS230 LYS231 GLN232 VAL233 VAL234 GLU235 SER236 ALA237 TYR238 GLU239 VAL240 ILE241 ARG242 LEU243 LYS244 GLY245 TYR246 THR247 ASN248 TRP249 ALA250 ILE251 GLY252 LEU253 SER254 VAL255 ALA256 GLU257 LEU258 CYS259 GLU260 THR261 MET262 LEU263 LYS264 ASN265 LEU266 TYR267 ARG268 VAL269 HIS270 SER271 VAL272 SER273 THR274 LEU275 VAL276 LYS277 GLY278 THR279 TYR280 GLY281 ILE282 GLU283 ASN284 ASP285 VAL286 PHE287 LEU288 SER289 LEU290 PRO291 CYS292 VAL293 LEU294 SER295 ALA296 SER297 GLY298 LEU299 THR300 SER301 VAL302 ILE303 ASN304 GLN305 LYS306 LEU307 LYS308 ASP309 ASP310 GLU311 VAL312 ALA313 GLN314 LEU315 LYS316 LYS317 SER318 ALA319 ASP320 THR321 LEU322 TRP323 SER324 ILE325 GLN326 LYS327 ASP328 LEU329 LYS330 ASP331
Unit 2 ALA1 THR2 LEU3 LYS4 GLU5 LYS6 LEU7 ILE8 THR9 PRO10 VAL11 THR16 VAL17 PRO18 SER19 ASN20 LYS21 ILE22 THR23 VAL24 VAL25 GLY26 VAL27 GLY28 GLN29 VAL30 GLY31 MET32 ALA33 CYS34 ALA35 ILE36 SER37 ILE38 LEU39 GLY40 LYS41 GLY42 LEU43 CYS44 ASP45 GLU46 LEU47 ALA48 LEU49 VAL50 ASP51 VAL52 LEU53 GLU54 ASP55 LYS56 LEU57 LYS58 GLY59 GLU60 MET61 MET62 ASP63 LEU64 GLN65 HIS66 GLY67 SER68 LEU69 PHE70 LEU71 GLN72 THR73 HIS74 LYS75 ILE76 VAL77 ALA78 ASP79 LYS80 ASP81 TYR82 ALA83 VAL84 THR85 ALA86 ASN87 SER88 LYS89 ILE90 VAL91 VAL92 VAL93 THR94 ALA95 GLY96 VAL97 LEU108 VAL109 GLN110 ARG111 ASN112 VAL113 ASN114 VAL115 PHE116 LYS117 PHE118 ILE119 ILE120 PRO121 GLN122 ILE123 VAL124 LYS125 TYR126 SER127 PRO128 ASN129 CYS130 THR131 ILE132 LEU133 VAL134 VAL135 SER136 ASN137 PRO138 VAL139 ASP140 ILE141 LEU142 THR143 TYR144 VAL145 THR146 TRP147 LYS148 LEU149 SER150 GLY151 LEU152 PRO153 LYS154 HIS155 ARG156 VAL157 ILE158 GLY159 SER160 GLY161 CYS162 ASN163 LEU164 ASP165 THR166 ALA167 ARG168 PHE169 ARG170 TYR171 LEU172 MET173 ALA174 GLU175 ARG176 LEU177 GLY178 ILE179 HIS180 PRO181 THR182 SER183 CYS184 HIS185 GLY186 TRP187 ILE188 LEU189 GLY190 GLU191 HIS192 GLY193 ASP194 SER195 SER196 VAL197 ALA198 VAL199 TRP200 SER201 GLY202 VAL203 ASN204 VAL205 ALA206 GLY207 VAL208 SER209 LEU210 GLN211 GLU212 LEU213 ASN214 PRO215 ALA216 MET217 GLY218 THR219 ASP220 LYS221 ASP222 SER223 GLU224 ASN225 TRP226 LYS227 GLU228 VAL229 HIS230 LYS231 GLN232 VAL233 VAL234 GLU235 SER236 ALA237 TYR238 GLU239 VAL240 ILE241 ARG242 LEU243 LYS244 GLY245 TYR246 THR247 ASN248 TRP249 ALA250 ILE251 GLY252 LEU253 SER254 VAL255 ALA256 GLU257 LEU258 CYS259 GLU260 THR261 MET262 LEU263 LYS264 ASN265 LEU266 TYR267 ARG268 VAL269 HIS270 SER271 VAL272 SER273 THR274 LEU275 VAL276 LYS277 GLY278 THR279 TYR280 GLY281 ILE282 GLU283 ASN284 ASP285 VAL286 PHE287 LEU288 SER289 LEU290 PRO291 CYS292 VAL293 LEU294 SER295 ALA296 SER297 GLY298 LEU299 THR300 SER301 VAL302 ILE303 ASN304 GLN305 LYS306 LEU307 LYS308 ASP309 ASP310 GLU311 VAL312 ALA313 GLN314 LEU315 LYS316 LYS317 SER318 ALA319 ASP320 THR321 LEU322 TRP323 SER324 ILE325 GLN326 LYS327 ASP328 LEU329 LYS330 ASP331
Unit 3 ALA1 THR2 LEU3 LYS4 GLU5 LYS6 LEU7 ILE8 THR9 PRO10 VAL11 THR16 VAL17 PRO18 SER19 ASN20 LYS21 ILE22 THR23 VAL24 VAL25 GLY26 VAL27 GLY28 GLN29 VAL30 GLY31 MET32 ALA33 CYS34 ALA35 ILE36 SER37 ILE38 LEU39 GLY40 LYS41 GLY42 LEU43 CYS44 ASP45 GLU46 LEU47 ALA48 LEU49 VAL50 ASP51 VAL52 LEU53 GLU54 ASP55 LYS56 LEU57 LYS58 GLY59 GLU60 MET61 MET62 ASP63 LEU64 GLN65 HIS66 GLY67 SER68 LEU69 PHE70 LEU71 GLN72 THR73 HIS74 LYS75 ILE76 VAL77 ALA78 ASP79 LYS80 ASP81 TYR82 ALA83 VAL84 THR85 ALA86 ASN87 SER88 LYS89 ILE90 VAL91 VAL92 VAL93 THR94 ALA95 GLY96 VAL97 LEU108 VAL109 GLN110 ARG111 ASN112 VAL113 ASN114 VAL115 PHE116 LYS117 PHE118 ILE119 ILE120 PRO121 GLN122 ILE123 VAL124 LYS125 TYR126 SER127 PRO128 ASN129 CYS130 THR131 ILE132 LEU133 VAL134 VAL135 SER136 ASN137 PRO138 VAL139 ASP140 ILE141 LEU142 THR143 TYR144 VAL145 THR146 TRP147 LYS148 LEU149 SER150 GLY151 LEU152 PRO153 LYS154 HIS155 ARG156 VAL157 ILE158 GLY159 SER160 GLY161 CYS162 ASN163 LEU164 ASP165 THR166 ALA167 ARG168 PHE169 ARG170 TYR171 LEU172 MET173 ALA174 GLU175 ARG176 LEU177 GLY178 ILE179 HIS180 PRO181 THR182 SER183 CYS184 HIS185 GLY186 TRP187 ILE188 LEU189 GLY190 GLU191 HIS192 GLY193 ASP194 SER195 SER196 VAL197 ALA198 VAL199 TRP200 SER201 GLY202 VAL203 ASN204 VAL205 ALA206 GLY207 VAL208 SER209 LEU210 GLN211 GLU212 LEU213 ASN214 PRO215 ALA216 MET217 GLY218 THR219 ASP220 LYS221 ASP222 SER223 GLU224 ASN225 TRP226 LYS227 GLU228 VAL229 HIS230 LYS231 GLN232 VAL233 VAL234 GLU235 SER236 ALA237 TYR238 GLU239 VAL240 ILE241 ARG242 LEU243 LYS244 GLY245 TYR246 THR247 ASN248 TRP249 ALA250 ILE251 GLY252 LEU253 SER254 VAL255 ALA256 GLU257 LEU258 CYS259 GLU260 THR261 MET262 LEU263 LYS264 ASN265 LEU266 TYR267 ARG268 VAL269 HIS270 SER271 VAL272 SER273 THR274 LEU275 VAL276 LYS277 GLY278 THR279 TYR280 GLY281 ILE282 GLU283 ASN284 ASP285 VAL286 PHE287 LEU288 SER289 LEU290 PRO291 CYS292 VAL293 LEU294 SER295 ALA296 SER297 GLY298 LEU299 THR300 SER301 VAL302 ILE303 ASN304 GLN305 LYS306 LEU307 LYS308 ASP309 ASP310 GLU311 VAL312 ALA313 GLN314 LEU315 LYS316 LYS317 SER318 ALA319 ASP320 THR321 LEU322 TRP323 SER324 ILE325 GLN326 LYS327 ASP328 LEU329 LYS330 ASP331
Unit 4 ALA1 THR2 LEU3 LYS4 GLU5 LYS6 LEU7 ILE8 THR9 PRO10 VAL11 THR16 VAL17 PRO18 SER19 ASN20 LYS21 ILE22 THR23 VAL24 VAL25 GLY26 VAL27 GLY28 GLN29 VAL30 GLY31 MET32 ALA33 CYS34 ALA35 ILE36 SER37 ILE38 LEU39 GLY40 LYS41 GLY42 LEU43 CYS44 ASP45 GLU46 LEU47 ALA48 LEU49 VAL50 ASP51 VAL52 LEU53 GLU54 ASP55 LYS56 LEU57 LYS58 GLY59 GLU60 MET61 MET62 ASP63 LEU64 GLN65 HIS66 GLY67 SER68 LEU69 PHE70 LEU71 GLN72 THR73 HIS74 LYS75 ILE76 VAL77 ALA78 ASP79 LYS80 ASP81 TYR82 ALA83 VAL84 THR85 ALA86 ASN87 SER88 LYS89 ILE90 VAL91 VAL92 VAL93 THR94 ALA95 GLY96 VAL97 LEU108 VAL109 GLN110 ARG111 ASN112 VAL113 ASN114 VAL115 PHE116 LYS117 PHE118 ILE119 ILE120 PRO121 GLN122 ILE123 VAL124 LYS125 TYR126 SER127 PRO128 ASN129 CYS130 THR131 ILE132 LEU133 VAL134 VAL135 SER136 ASN137 PRO138 VAL139 ASP140 ILE141 LEU142 THR143 TYR144 VAL145 THR146 TRP147 LYS148 LEU149 SER150 GLY151 LEU152 PRO153 LYS154 HIS155 ARG156 VAL157 ILE158 GLY159 SER160 GLY161 CYS162 ASN163 LEU164 ASP165 THR166 ALA167 ARG168 PHE169 ARG170 TYR171 LEU172 MET173 ALA174 GLU175 ARG176 LEU177 GLY178 ILE179 HIS180 PRO181 THR182 SER183 CYS184 HIS185 GLY186 TRP187 ILE188 LEU189 GLY190 GLU191 HIS192 GLY193 ASP194 SER195 SER196 VAL197 ALA198 VAL199 TRP200 SER201 GLY202 VAL203 ASN204 VAL205 ALA206 GLY207 VAL208 SER209 LEU210 GLN211 GLU212 LEU213 ASN214 PRO215 ALA216 MET217 GLY218 THR219 ASP220 LYS221 ASP222 SER223 GLU224 ASN225 TRP226 LYS227 GLU228 VAL229 HIS230 LYS231 GLN232 VAL233 VAL234 GLU235 SER236 ALA237 TYR238 GLU239 VAL240 ILE241 ARG242 LEU243 LYS244 GLY245 TYR246 THR247 ASN248 TRP249 ALA250 ILE251 GLY252 LEU253 SER254 VAL255 ALA256 GLU257 LEU258 CYS259 GLU260 THR261 MET262 LEU263 LYS264 ASN265 LEU266 TYR267 ARG268 VAL269 HIS270 SER271 VAL272 SER273 THR274 LEU275 VAL276 LYS277 GLY278 THR279 TYR280 GLY281 ILE282 GLU283 ASN284 ASP285 VAL286 PHE287 LEU288 SER289 LEU290 PRO291 CYS292 VAL293 LEU294 SER295 ALA296 SER297 GLY298 LEU299 THR300 SER301 VAL302 ILE303 ASN304 GLN305 LYS306 LEU307 LYS308 ASP309 ASP310 GLU311 VAL312 ALA313 GLN314 LEU315 LYS316 LYS317 SER318 ALA319 ASP320 THR321 LEU322 TRP323 SER324 ILE325 GLN326 LYS327 ASP328 LEU329 LYS330 ASP331
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany