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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL INSIGHTS INTO A FAMILY 39 GLYCOSIDE HYDROLASE FRO SYMBIONT BACTEROIDES CELLULOSILYTICUS WH2.
Keywords BACTEROIDES, GH39, PHYLOGENY, ENDO-GLYCOSIDE HYDROLASE, HYDR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JVK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED PROTEIN  A 490 3829 0
2  Protein   UNCHARACTERIZED PROTEIN  B 490 3829 0
3  Protein   UNCHARACTERIZED PROTEIN  C 490 3829 0
4  Ligand   UNCHARACTERIZED PROTEIN  A 4 0 22
5  Ligand   UNCHARACTERIZED PROTEIN  B 5 0 35
6  Ligand   UNCHARACTERIZED PROTEIN  C 7 0 49
7 Water     537 0 537
total       2023 11487 643
Proteins
Unit 1 LYS36 ILE37 GLN38 LEU39 ASN40 PRO41 VAL42 LEU43 VAL44 SER45 THR46 ASP47 ILE48 GLY49 LYS50 LYS51 ASN52 VAL53 ALA54 LYS55 ASN56 LEU57 GLY58 GLU59 GLY60 ASN61 MET62 ARG63 LEU64 THR65 GLY66 LYS67 LEU68 VAL69 ARG70 TYR71 GLY72 ASP73 ASN74 LEU75 THR76 PHE77 SER78 GLY79 VAL80 ALA81 ASN82 ALA83 GLY84 LYS85 GLU86 LEU87 VAL88 ILE89 ASP90 VAL91 THR92 GLU93 LEU94 GLY95 TYR96 TYR97 THR98 LEU99 GLU100 LEU101 THR102 LEU103 ALA104 ASP105 ASN106 GLU107 ASN108 ILE109 ILE110 GLN111 THR112 ALA113 VAL114 VAL115 ASN116 TYR117 ALA118 VAL119 VAL120 PRO121 GLU122 ILE123 ILE124 ASP125 GLU126 GLU127 ARG128 PRO129 LEU130 ASP131 MET132 GLY133 VAL134 CYS135 VAL136 HIS137 PRO138 PRO139 LYS140 ASP141 ASN142 ASP143 TYR144 SER145 LYS146 THR147 PHE148 ARG149 LEU150 ILE151 ARG152 MET153 ALA154 GLY155 PHE156 THR157 ARG158 ILE159 ARG160 THR161 ASP162 LEU163 ALA164 TRP165 GLU166 HIS167 VAL168 GLU169 PRO170 ALA171 LYS172 GLY173 LYS174 TYR175 VAL176 MET177 PRO178 GLU179 HIS180 MET181 TYR182 GLN183 PHE184 VAL185 SER186 ALA187 SER188 GLU189 LYS190 GLU191 GLY192 ILE193 LYS194 PRO195 LEU196 ILE197 VAL198 PHE199 GLY200 TYR201 ALA202 ASN203 ALA204 ILE205 ALA206 TYR207 PRO208 ASN209 GLY210 PHE211 PRO212 THR213 ILE214 PRO215 PHE216 PRO217 THR218 THR219 GLU220 GLU221 SER222 ARG223 LEU224 GLY225 CYS226 ALA227 ASN228 ALA229 LEU230 ALA231 TYR232 ALA233 VAL234 LYS235 GLU236 MET237 GLY238 ASN239 ARG240 VAL241 THR242 GLU243 TRP244 GLU245 LEU246 TRP247 ASN248 GLU249 PRO250 ASN251 TYR252 ALA253 ASP254 PRO255 VAL256 LYS257 ASP258 TYR259 LEU260 PRO261 LEU262 LEU263 LYS264 VAL265 VAL266 TYR267 PRO268 THR269 VAL270 LYS271 LYS272 VAL273 ASN274 PRO275 ASP276 ILE277 THR278 LEU279 ILE280 SER281 GLY282 GLY283 GLY284 SER285 GLY286 ALA287 GLY288 GLY289 GLY290 PRO291 GLY292 GLY293 ALA294 PHE295 ILE296 ILE297 PRO298 VAL299 LEU300 ASP301 ALA302 GLY303 GLY304 VAL305 ASP306 PHE307 GLN308 ASP309 GLY310 TYR311 SER312 ILE313 HIS314 PRO315 TYR316 MET317 ALA318 PRO319 ASN320 THR321 PRO322 ASP323 PHE324 GLY325 TYR326 ALA327 GLY328 THR329 GLY330 GLY331 PRO332 ILE333 PRO334 ALA335 VAL336 ASN337 ILE338 PRO339 THR340 VAL341 TRP342 PRO343 TYR344 LEU345 LYS346 LYS347 ILE348 SER349 GLU350 GLU351 ASN352 LEU353 ARG354 SER355 ASP356 LYS357 LYS358 GLU359 LEU360 SER361 VAL362 TRP363 VAL364 THR365 GLU366 ILE367 GLY368 TRP369 ASN370 SER371 THR372 THR373 ASN374 LEU375 ASP376 ILE377 GLU378 GLN379 ALA380 ALA381 TYR382 LEU383 ALA384 ARG385 THR386 TYR387 LEU388 LEU389 SER390 ARG391 ARG392 HIS393 TYR394 MET395 SER396 PRO397 GLY398 VAL399 PHE400 TRP401 TYR402 ASP403 PHE404 GLN405 ASN406 ASP407 GLY408 ASP409 THR410 PRO411 ASP412 ASN413 ILE414 GLU415 HIS416 ASN417 PHE418 GLY419 LEU420 LEU421 ARG422 SER423 ASP424 PHE425 SER426 PRO427 LYS428 PRO429 SER430 TYR431 GLN432 ALA433 ALA434 ALA435 VAL436 VAL437 ALA438 SER439 LEU440 LEU441 LYS442 ASN443 TYR444 THR445 PHE446 GLN447 GLU448 THR449 LEU450 LEU451 ASP452 GLY453 VAL454 ASN455 LYS456 VAL457 LEU458 ALA459 PHE460 GLY461 GLN462 ASP463 GLY464 GLU465 THR466 THR467 PHE468 TYR469 THR470 ALA471 TRP472 THR473 THR474 LYS475 ALA476 GLU477 GLY478 THR479 THR480 ILE481 ARG482 VAL483 LYS484 ALA485 PRO486 THR487 ASP488 VAL489 ASP490 LYS491 LEU492 ARG493 LEU494 ILE495 ASP496 TRP497 GLN498 GLY499 CYS500 GLU501 MET502 PRO503 LEU504 THR505 VAL506 ASP507 ASN508 GLY509 TYR510 LEU511 VAL512 LEU513 ASN514 LEU515 SER516 ILE517 LEU518 PRO519 GLN520 TYR521 LEU522 VAL523 VAL524 LYS525
Unit 2 LYS36 ILE37 GLN38 LEU39 ASN40 PRO41 VAL42 LEU43 VAL44 SER45 THR46 ASP47 ILE48 GLY49 LYS50 LYS51 ASN52 VAL53 ALA54 LYS55 ASN56 LEU57 GLY58 GLU59 GLY60 ASN61 MET62 ARG63 LEU64 THR65 GLY66 LYS67 LEU68 VAL69 ARG70 TYR71 GLY72 ASP73 ASN74 LEU75 THR76 PHE77 SER78 GLY79 VAL80 ALA81 ASN82 ALA83 GLY84 LYS85 GLU86 LEU87 VAL88 ILE89 ASP90 VAL91 THR92 GLU93 LEU94 GLY95 TYR96 TYR97 THR98 LEU99 GLU100 LEU101 THR102 LEU103 ALA104 ASP105 ASN106 GLU107 ASN108 ILE109 ILE110 GLN111 THR112 ALA113 VAL114 VAL115 ASN116 TYR117 ALA118 VAL119 VAL120 PRO121 GLU122 ILE123 ILE124 ASP125 GLU126 GLU127 ARG128 PRO129 LEU130 ASP131 MET132 GLY133 VAL134 CYS135 VAL136 HIS137 PRO138 PRO139 LYS140 ASP141 ASN142 ASP143 TYR144 SER145 LYS146 THR147 PHE148 ARG149 LEU150 ILE151 ARG152 MET153 ALA154 GLY155 PHE156 THR157 ARG158 ILE159 ARG160 THR161 ASP162 LEU163 ALA164 TRP165 GLU166 HIS167 VAL168 GLU169 PRO170 ALA171 LYS172 GLY173 LYS174 TYR175 VAL176 MET177 PRO178 GLU179 HIS180 MET181 TYR182 GLN183 PHE184 VAL185 SER186 ALA187 SER188 GLU189 LYS190 GLU191 GLY192 ILE193 LYS194 PRO195 LEU196 ILE197 VAL198 PHE199 GLY200 TYR201 ALA202 ASN203 ALA204 ILE205 ALA206 TYR207 PRO208 ASN209 GLY210 PHE211 PRO212 THR213 ILE214 PRO215 PHE216 PRO217 THR218 THR219 GLU220 GLU221 SER222 ARG223 LEU224 GLY225 CYS226 ALA227 ASN228 ALA229 LEU230 ALA231 TYR232 ALA233 VAL234 LYS235 GLU236 MET237 GLY238 ASN239 ARG240 VAL241 THR242 GLU243 TRP244 GLU245 LEU246 TRP247 ASN248 GLU249 PRO250 ASN251 TYR252 ALA253 ASP254 PRO255 VAL256 LYS257 ASP258 TYR259 LEU260 PRO261 LEU262 LEU263 LYS264 VAL265 VAL266 TYR267 PRO268 THR269 VAL270 LYS271 LYS272 VAL273 ASN274 PRO275 ASP276 ILE277 THR278 LEU279 ILE280 SER281 GLY282 GLY283 GLY284 SER285 GLY286 ALA287 GLY288 GLY289 GLY290 PRO291 GLY292 GLY293 ALA294 PHE295 ILE296 ILE297 PRO298 VAL299 LEU300 ASP301 ALA302 GLY303 GLY304 VAL305 ASP306 PHE307 GLN308 ASP309 GLY310 TYR311 SER312 ILE313 HIS314 PRO315 TYR316 MET317 ALA318 PRO319 ASN320 THR321 PRO322 ASP323 PHE324 GLY325 TYR326 ALA327 GLY328 THR329 GLY330 GLY331 PRO332 ILE333 PRO334 ALA335 VAL336 ASN337 ILE338 PRO339 THR340 VAL341 TRP342 PRO343 TYR344 LEU345 LYS346 LYS347 ILE348 SER349 GLU350 GLU351 ASN352 LEU353 ARG354 SER355 ASP356 LYS357 LYS358 GLU359 LEU360 SER361 VAL362 TRP363 VAL364 THR365 GLU366 ILE367 GLY368 TRP369 ASN370 SER371 THR372 THR373 ASN374 LEU375 ASP376 ILE377 GLU378 GLN379 ALA380 ALA381 TYR382 LEU383 ALA384 ARG385 THR386 TYR387 LEU388 LEU389 SER390 ARG391 ARG392 HIS393 TYR394 MET395 SER396 PRO397 GLY398 VAL399 PHE400 TRP401 TYR402 ASP403 PHE404 GLN405 ASN406 ASP407 GLY408 ASP409 THR410 PRO411 ASP412 ASN413 ILE414 GLU415 HIS416 ASN417 PHE418 GLY419 LEU420 LEU421 ARG422 SER423 ASP424 PHE425 SER426 PRO427 LYS428 PRO429 SER430 TYR431 GLN432 ALA433 ALA434 ALA435 VAL436 VAL437 ALA438 SER439 LEU440 LEU441 LYS442 ASN443 TYR444 THR445 PHE446 GLN447 GLU448 THR449 LEU450 LEU451 ASP452 GLY453 VAL454 ASN455 LYS456 VAL457 LEU458 ALA459 PHE460 GLY461 GLN462 ASP463 GLY464 GLU465 THR466 THR467 PHE468 TYR469 THR470 ALA471 TRP472 THR473 THR474 LYS475 ALA476 GLU477 GLY478 THR479 THR480 ILE481 ARG482 VAL483 LYS484 ALA485 PRO486 THR487 ASP488 VAL489 ASP490 LYS491 LEU492 ARG493 LEU494 ILE495 ASP496 TRP497 GLN498 GLY499 CYS500 GLU501 MET502 PRO503 LEU504 THR505 VAL506 ASP507 ASN508 GLY509 TYR510 LEU511 VAL512 LEU513 ASN514 LEU515 SER516 ILE517 LEU518 PRO519 GLN520 TYR521 LEU522 VAL523 VAL524 LYS525
Unit 3 LYS36 ILE37 GLN38 LEU39 ASN40 PRO41 VAL42 LEU43 VAL44 SER45 THR46 ASP47 ILE48 GLY49 LYS50 LYS51 ASN52 VAL53 ALA54 LYS55 ASN56 LEU57 GLY58 GLU59 GLY60 ASN61 MET62 ARG63 LEU64 THR65 GLY66 LYS67 LEU68 VAL69 ARG70 TYR71 GLY72 ASP73 ASN74 LEU75 THR76 PHE77 SER78 GLY79 VAL80 ALA81 ASN82 ALA83 GLY84 LYS85 GLU86 LEU87 VAL88 ILE89 ASP90 VAL91 THR92 GLU93 LEU94 GLY95 TYR96 TYR97 THR98 LEU99 GLU100 LEU101 THR102 LEU103 ALA104 ASP105 ASN106 GLU107 ASN108 ILE109 ILE110 GLN111 THR112 ALA113 VAL114 VAL115 ASN116 TYR117 ALA118 VAL119 VAL120 PRO121 GLU122 ILE123 ILE124 ASP125 GLU126 GLU127 ARG128 PRO129 LEU130 ASP131 MET132 GLY133 VAL134 CYS135 VAL136 HIS137 PRO138 PRO139 LYS140 ASP141 ASN142 ASP143 TYR144 SER145 LYS146 THR147 PHE148 ARG149 LEU150 ILE151 ARG152 MET153 ALA154 GLY155 PHE156 THR157 ARG158 ILE159 ARG160 THR161 ASP162 LEU163 ALA164 TRP165 GLU166 HIS167 VAL168 GLU169 PRO170 ALA171 LYS172 GLY173 LYS174 TYR175 VAL176 MET177 PRO178 GLU179 HIS180 MET181 TYR182 GLN183 PHE184 VAL185 SER186 ALA187 SER188 GLU189 LYS190 GLU191 GLY192 ILE193 LYS194 PRO195 LEU196 ILE197 VAL198 PHE199 GLY200 TYR201 ALA202 ASN203 ALA204 ILE205 ALA206 TYR207 PRO208 ASN209 GLY210 PHE211 PRO212 THR213 ILE214 PRO215 PHE216 PRO217 THR218 THR219 GLU220 GLU221 SER222 ARG223 LEU224 GLY225 CYS226 ALA227 ASN228 ALA229 LEU230 ALA231 TYR232 ALA233 VAL234 LYS235 GLU236 MET237 GLY238 ASN239 ARG240 VAL241 THR242 GLU243 TRP244 GLU245 LEU246 TRP247 ASN248 GLU249 PRO250 ASN251 TYR252 ALA253 ASP254 PRO255 VAL256 LYS257 ASP258 TYR259 LEU260 PRO261 LEU262 LEU263 LYS264 VAL265 VAL266 TYR267 PRO268 THR269 VAL270 LYS271 LYS272 VAL273 ASN274 PRO275 ASP276 ILE277 THR278 LEU279 ILE280 SER281 GLY282 GLY283 GLY284 SER285 GLY286 ALA287 GLY288 GLY289 GLY290 PRO291 GLY292 GLY293 ALA294 PHE295 ILE296 ILE297 PRO298 VAL299 LEU300 ASP301 ALA302 GLY303 GLY304 VAL305 ASP306 PHE307 GLN308 ASP309 GLY310 TYR311 SER312 ILE313 HIS314 PRO315 TYR316 MET317 ALA318 PRO319 ASN320 THR321 PRO322 ASP323 PHE324 GLY325 TYR326 ALA327 GLY328 THR329 GLY330 GLY331 PRO332 ILE333 PRO334 ALA335 VAL336 ASN337 ILE338 PRO339 THR340 VAL341 TRP342 PRO343 TYR344 LEU345 LYS346 LYS347 ILE348 SER349 GLU350 GLU351 ASN352 LEU353 ARG354 SER355 ASP356 LYS357 LYS358 GLU359 LEU360 SER361 VAL362 TRP363 VAL364 THR365 GLU366 ILE367 GLY368 TRP369 ASN370 SER371 THR372 THR373 ASN374 LEU375 ASP376 ILE377 GLU378 GLN379 ALA380 ALA381 TYR382 LEU383 ALA384 ARG385 THR386 TYR387 LEU388 LEU389 SER390 ARG391 ARG392 HIS393 TYR394 MET395 SER396 PRO397 GLY398 VAL399 PHE400 TRP401 TYR402 ASP403 PHE404 GLN405 ASN406 ASP407 GLY408 ASP409 THR410 PRO411 ASP412 ASN413 ILE414 GLU415 HIS416 ASN417 PHE418 GLY419 LEU420 LEU421 ARG422 SER423 ASP424 PHE425 SER426 PRO427 LYS428 PRO429 SER430 TYR431 GLN432 ALA433 ALA434 ALA435 VAL436 VAL437 ALA438 SER439 LEU440 LEU441 LYS442 ASN443 TYR444 THR445 PHE446 GLN447 GLU448 THR449 LEU450 LEU451 ASP452 GLY453 VAL454 ASN455 LYS456 VAL457 LEU458 ALA459 PHE460 GLY461 GLN462 ASP463 GLY464 GLU465 THR466 THR467 PHE468 TYR469 THR470 ALA471 TRP472 THR473 THR474 LYS475 ALA476 GLU477 GLY478 THR479 THR480 ILE481 ARG482 VAL483 LYS484 ALA485 PRO486 THR487 ASP488 VAL489 ASP490 LYS491 LEU492 ARG493 LEU494 ILE495 ASP496 TRP497 GLN498 GLY499 CYS500 GLU501 MET502 PRO503 LEU504 THR505 VAL506 ASP507 ASN508 GLY509 TYR510 LEU511 VAL512 LEU513 ASN514 LEU515 SER516 ILE517 LEU518 PRO519 GLN520 TYR521 LEU522 VAL523 VAL524 LYS525
Ligands
Unit 4 SO4651 SO4652 GOL653 GOL654
Unit 5 SO4651 SO4652 SO4653 CXS654 GOL655
Unit 6 SO4651 CXS652 GOL653 GOL654 GOL655 GOL656 GOL657
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany