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Sequence, Chains, Asymmetric and Biological Units

Title THE 3D STRUCTURE OF NI-RECONSTITUTED U489C VARIANT OF [NIFES HYDROGENASE FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH IN TH STATE AT 1.35 ANGSTROM RESOLUTION
Keywords NIFESE-SITE H2 CLEAVAGE/PRODUCTION, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5JT1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT  A 283 4181 0
2  Protein   PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING  B 483 7505 22
3  Ligand   PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT  A 4 0 34
4  Ligand   PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING  B 4 0 12
5 Water     758 0 758
total       1532 11686 826

Proteins
Unit 1 GLY1 THR2 LEU3 THR4 GLY5 GLU6 ARG7 PRO8 PRO9 VAL10 PHE11 TRP12 LEU13 GLN14 GLY15 GLN16 GLY17 CYS18 THR19 GLY20 CYS21 SER22 VAL23 THR24 LEU25 LEU26 ASN27 SER28 VAL29 HIS30 PRO31 SER32 ILE33 ALA34 ASP35 VAL36 LEU37 LEU38 LYS39 VAL40 ILE41 SER42 LEU43 GLU44 PHE45 HIS46 PRO47 THR48 VAL49 MET50 ALA51 TRP52 GLU53 GLY54 GLU55 HIS56 ALA57 ILE58 GLU59 HIS60 MET61 ARG62 LYS63 VAL64 ALA65 GLU66 LYS67 PHE68 LYS69 GLY70 LYS71 PHE72 PHE73 LEU74 VAL75 ILE76 GLU77 GLY78 SER79 VAL80 PRO81 VAL82 GLU83 ALA84 ASP85 GLY86 LYS87 TYR88 CYS89 ILE90 ILE91 GLY92 GLU93 ALA94 ASN95 HIS96 HIS97 GLU98 ILE99 SER100 MET101 VAL102 ASP103 ALA104 LEU105 LYS106 GLU107 PHE108 GLY109 PRO110 ASN111 ALA112 ALA113 ALA114 VAL115 LEU116 ALA117 VAL118 GLY119 THR120 CYS121 ALA122 ALA123 TYR124 GLY125 GLY126 ILE127 PRO128 ALA129 ALA130 GLU131 GLY132 SER133 GLU134 THR135 GLY136 ALA137 THR138 ALA139 VAL140 SER141 LYS142 PHE143 LEU144 GLY145 ASP146 ASN147 GLY148 ILE149 LYS150 THR151 PRO152 VAL153 VAL154 ASN155 ILE156 PRO157 GLY158 CYS159 PRO160 PRO161 HIS162 PRO163 ASP164 TRP165 ILE166 VAL167 GLY168 THR169 VAL170 VAL171 LEU172 ALA173 LEU174 ASP175 ALA176 ILE177 LYS178 LYS179 ASN180 GLY181 LEU182 GLU183 GLY184 GLY185 LEU186 ALA187 GLU188 VAL189 VAL190 LYS191 VAL192 LEU193 ASP194 SER195 ASP196 GLY197 ARG198 PRO199 THR200 PRO201 PHE202 PHE203 GLY204 ARG205 ASN206 ILE207 HIS208 GLU209 ASN210 CYS211 PRO212 TYR213 LEU214 ASP215 LYS216 TYR217 ASP218 GLU219 GLY220 VAL221 MET222 SER223 ALA224 THR225 PHE226 THR227 ASP228 LYS229 VAL230 GLY231 CYS232 ARG233 TYR234 ASP235 LEU236 GLY237 CYS238 LYS239 GLY240 PRO241 MET242 THR243 MET244 ALA245 ASP246 CYS247 PHE248 GLU249 ARG250 LYS251 TRP252 ASN253 GLY254 GLY255 VAL256 ASN257 TRP258 CYS259 VAL260 GLN261 ASN262 ALA263 VAL264 CYS265 ILE266 GLY267 CYS268 VAL269 GLU270 PRO271 ASP272 PHE273 PRO274 ASP275 GLY276 LYS277 SER278 PRO279 PHE280 TYR281 GLN282 ALA283
Unit 2 ALA13 THR14 GLY15 ARG16 THR17 THR18 ILE19 ALA20 ILE21 ASP22 PRO23 VAL24 THR25 ARG26 ILE27 GLU28 GLY29 HIS30 LEU31 LYS32 ALA33 GLU34 VAL35 VAL36 VAL37 GLU38 ASN39 GLY40 LYS41 VAL42 VAL43 ASP44 ALA45 ARG46 LEU47 SER48 GLY49 GLY50 MET51 TYR52 ARG53 GLY54 PHE55 GLU56 THR57 ILE58 LEU59 ARG60 GLY61 ARG62 ASP63 PRO64 ARG65 ASP66 ALA67 SER68 GLN69 ILE70 VAL71 GLN72 ARG73 ILE74 CYS75 GLY76 VAL77 CYS78 PRO79 THR80 ALA81 HIS82 SER83 THR84 ALA85 SER86 VAL87 LEU88 ALA89 LEU90 ASP91 GLU92 ALA93 PHE94 GLY95 ALA96 LYS97 VAL98 PRO99 ASN100 ASN101 GLY102 ARG103 ILE104 THR105 ARG106 ASN107 LEU108 ILE109 PHE110 GLY111 ALA112 ASN113 TYR114 LEU115 GLN116 SER117 HIS118 ILE119 LEU120 HIS121 PHE122 TYR123 HIS124 LEU125 SER126 ALA127 GLN128 ASP129 PHE130 VAL131 GLN132 GLY133 PRO134 ASP135 THR136 ALA137 PRO138 PHE139 VAL140 PRO141 ARG142 PHE143 PRO144 LYS145 SER146 ASP147 LEU148 ARG149 LEU150 SER151 LYS152 GLU153 LEU154 ASN155 LYS156 ALA157 GLY158 VAL159 ASP160 GLN161 TYR162 ILE163 GLU164 ALA165 LEU166 GLU167 VAL168 ARG169 ARG170 ILE171 CYS172 HIS173 GLU174 MET175 VAL176 ALA177 LEU178 PHE179 GLY180 GLY181 ARG182 MET183 PRO184 HIS185 VAL186 GLN187 GLY188 GLN189 VAL190 VAL191 GLY192 GLY193 ALA194 THR195 GLU196 ILE197 PRO198 THR199 LYS200 GLU201 LYS202 LEU203 VAL204 GLU205 TYR206 ALA207 ALA208 ARG209 PHE210 LYS211 LYS212 VAL213 ARG214 ASP215 PHE216 VAL217 GLU218 GLN219 LYS220 TYR221 VAL222 PRO223 VAL224 VAL225 TYR226 THR227 ILE228 GLY229 SER230 LYS231 TYR232 LYS233 ASP234 MET235 PHE236 LYS237 VAL238 GLY239 GLN240 GLY241 PHE242 LYS243 ALA244 ALA245 LEU246 CYS247 VAL248 GLY249 ALA250 PHE251 PRO252 LEU253 ASP254 ASN255 SER256 GLY257 LYS258 LYS259 HIS260 LEU261 PHE262 MET263 PRO264 GLY265 VAL266 TYR267 ALA268 LYS269 GLY270 LYS271 ASP272 MET273 PRO274 PHE275 ASP276 PRO277 SER278 LYS279 ILE280 LYS281 GLU282 TYR283 VAL284 LYS285 TYR286 SER287 TRP288 PHE289 ALA290 GLU291 GLU292 THR293 THR294 GLY295 LEU296 ASN297 TYR298 LYS299 GLU300 GLY301 LYS302 THR303 ILE304 PRO305 ALA306 PRO307 ASP308 LYS309 ALA310 GLY311 ALA312 TYR313 SER314 PHE315 VAL316 LYS317 ALA318 PRO319 ARG320 TYR321 ASP322 GLY323 LEU324 SER325 LEU326 GLU327 VAL328 GLY329 PRO330 LEU331 ALA332 ARG333 MET334 TRP335 VAL336 ASN337 ASN338 PRO339 GLU340 LEU341 SER342 PRO343 VAL344 GLY345 LYS346 LYS347 LEU348 LEU349 LYS350 ASP351 LEU352 PHE353 GLY354 ILE355 SER356 ALA357 LYS358 LYS359 PHE360 ARG361 ASP362 LEU363 GLY364 GLU365 GLU366 ALA367 ALA368 PHE369 SER370 LEU371 MET372 GLY373 ARG374 HIS375 VAL376 ALA377 ARG378 ALA379 GLU380 GLU381 THR382 TYR383 TYR384 MET385 LEU386 GLY387 ALA388 ILE389 GLU390 GLY391 TRP392 LEU393 LYS394 GLU395 ILE396 LYS397 ALA398 GLY399 GLU400 ASP401 THR402 VAL403 VAL404 MET405 PRO406 ALA407 VAL408 PRO409 ALA410 SER411 ALA412 GLU413 GLY414 THR415 GLY416 PHE417 THR418 GLU419 ALA420 PRO421 ARG422 GLY423 SER424 LEU425 LEU426 HIS427 TYR428 VAL429 LYS430 VAL431 LYS432 ASP433 SER434 LYS435 ILE436 ASP437 ASN438 TYR439 GLN440 ILE441 VAL442 SER443 ALA444 SER445 LEU446 TRP447 ASN448 CYS449 ASN450 PRO451 ARG452 ASP453 ASP454 MET455 GLY456 GLN457 ARG458 GLY459 ALA460 VAL461 GLU462 GLU463 ALA464 LEU465 ILE466 GLY467 ILE468 PRO469 VAL470 ASP471 ASP472 ILE473 GLN474 ASN475 PRO476 VAL477 ASN478 VAL479 ALA480 ARG481 LEU482 ILE483 ARG484 ALA485 PHE486 ASP487 PRO488 CYS489 LEU490 GLY491 CYS492 ALA493 VAL494 HIS495

Ligands
Unit 3 SF4301 SF4302 SF4303 6ML304
Unit 4 FCO601 NI602 FE2603 H2S604

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany