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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING THE DNA WITH TETRAHYDROFURAN (THF)
Keywords HISTONE FOLD, DNA BINDING, NUCLEUS, CHROMATIN FORMATION, NUC AP-SITE, DNA BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5JRG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE H3.1  A 97 801 0
2  Protein   HISTONE H4  B 78 619 0
3  Protein   HISTONE H2A TYPE 1-B/E  C 107 824 0
4  Protein   HISTONE H2B TYPE 1-J  D 97 769 0
5  Protein   HISTONE H3.1  E 99 816 0
6  Protein   HISTONE H4  F 86 694 0
7  Protein   HISTONE H2A TYPE 1-B/E  G 109 840 0
8  Protein   HISTONE H2B TYPE 1-J  H 96 756 0
9  Other macromolecule   DNA (145-MER)  I 145 2928 11
10  Other macromolecule   DNA (145-MER)  J 145 2950 11
11  Ligand   HISTONE H3.1  A 1 0 1
12  Ligand   HISTONE H2A TYPE 1-B/E  C 1 0 1
13  Ligand   HISTONE H3.1  E 2 0 2
14  Ligand   HISTONE H2A TYPE 1-B/E  G 1 0 1
15  Ligand   DNA (145-MER)  I 8 0 8
16  Ligand   DNA (145-MER)  J 6 0 6
17 Water     244 0 244
total       1322 11997 285

Proteins
Unit 1 PRO38 HIS39 ARG40 TYR41 ARG42 PRO43 GLY44 THR45 VAL46 ALA47 LEU48 ARG49 GLU50 ILE51 ARG52 ARG53 TYR54 GLN55 LYS56 SER57 THR58 GLU59 LEU60 LEU61 ILE62 ARG63 LYS64 LEU65 PRO66 PHE67 GLN68 ARG69 LEU70 VAL71 ARG72 GLU73 ILE74 ALA75 GLN76 ASP77 PHE78 LYS79 THR80 ASP81 LEU82 ARG83 PHE84 GLN85 SER86 SER87 ALA88 VAL89 MET90 ALA91 LEU92 GLN93 GLU94 ALA95 CYS96 GLU97 ALA98 TYR99 LEU100 VAL101 GLY102 LEU103 PHE104 GLU105 ASP106 THR107 ASN108 LEU109 CYS110 ALA111 ILE112 HIS113 ALA114 LYS115 ARG116 VAL117 THR118 ILE119 MET120 PRO121 LYS122 ASP123 ILE124 GLN125 LEU126 ALA127 ARG128 ARG129 ILE130 ARG131 GLY132 GLU133 ARG134
Unit 2 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 THR54 ARG55 GLY56 VAL57 LEU58 LYS59 VAL60 PHE61 LEU62 GLU63 ASN64 VAL65 ILE66 ARG67 ASP68 ALA69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 ALA83 MET84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 3 ALA12 LYS13 ALA14 LYS15 THR16 ARG17 SER18 SER19 ARG20 ALA21 GLY22 LEU23 GLN24 PHE25 PRO26 VAL27 GLY28 ARG29 VAL30 HIS31 ARG32 LEU33 LEU34 ARG35 LYS36 GLY37 ASN38 TYR39 SER40 GLU41 ARG42 VAL43 GLY44 ALA45 GLY46 ALA47 PRO48 VAL49 TYR50 LEU51 ALA52 ALA53 VAL54 LEU55 GLU56 TYR57 LEU58 THR59 ALA60 GLU61 ILE62 LEU63 GLU64 LEU65 ALA66 GLY67 ASN68 ALA69 ALA70 ARG71 ASP72 ASN73 LYS74 LYS75 THR76 ARG77 ILE78 ILE79 PRO80 ARG81 HIS82 LEU83 GLN84 LEU85 ALA86 ILE87 ARG88 ASN89 ASP90 GLU91 GLU92 LEU93 ASN94 LYS95 LEU96 LEU97 GLY98 ARG99 VAL100 THR101 ILE102 ALA103 GLN104 GLY105 GLY106 VAL107 LEU108 PRO109 ASN110 ILE111 GLN112 ALA113 VAL114 LEU115 LEU116 PRO117 LYS118
Unit 4 LYS27 LYS28 ARG29 LYS30 ARG31 SER32 ARG33 LYS34 GLU35 SER36 TYR37 SER38 ILE39 TYR40 VAL41 TYR42 LYS43 VAL44 LEU45 LYS46 GLN47 VAL48 HIS49 PRO50 ASP51 THR52 GLY53 ILE54 SER55 SER56 LYS57 ALA58 MET59 GLY60 ILE61 MET62 ASN63 SER64 PHE65 VAL66 ASN67 ASP68 ILE69 PHE70 GLU71 ARG72 ILE73 ALA74 GLY75 GLU76 ALA77 SER78 ARG79 LEU80 ALA81 HIS82 TYR83 ASN84 LYS85 ARG86 SER87 THR88 ILE89 THR90 SER91 ARG92 GLU93 ILE94 GLN95 THR96 ALA97 VAL98 ARG99 LEU100 LEU101 LEU102 PRO103 GLY104 GLU105 LEU106 ALA107 LYS108 HIS109 ALA110 VAL111 SER112 GLU113 GLY114 THR115 LYS116 ALA117 VAL118 THR119 LYS120 TYR121 THR122 SER123
Unit 5 LYS37 PRO38 HIS39 ARG40 TYR41 ARG42 PRO43 GLY44 THR45 VAL46 ALA47 LEU48 ARG49 GLU50 ILE51 ARG52 ARG53 TYR54 GLN55 LYS56 SER57 THR58 GLU59 LEU60 LEU61 ILE62 ARG63 LYS64 LEU65 PRO66 PHE67 GLN68 ARG69 LEU70 VAL71 ARG72 GLU73 ILE74 ALA75 GLN76 ASP77 PHE78 LYS79 THR80 ASP81 LEU82 ARG83 PHE84 GLN85 SER86 SER87 ALA88 VAL89 MET90 ALA91 LEU92 GLN93 GLU94 ALA95 CYS96 GLU97 ALA98 TYR99 LEU100 VAL101 GLY102 LEU103 PHE104 GLU105 ASP106 THR107 ASN108 LEU109 CYS110 ALA111 ILE112 HIS113 ALA114 LYS115 ARG116 VAL117 THR118 ILE119 MET120 PRO121 LYS122 ASP123 ILE124 GLN125 LEU126 ALA127 ARG128 ARG129 ILE130 ARG131 GLY132 GLU133 ARG134 ALA135
Unit 6 ARG17 HIS18 ARG19 LYS20 VAL21 LEU22 ARG23 ASP24 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 THR54 ARG55 GLY56 VAL57 LEU58 LYS59 VAL60 PHE61 LEU62 GLU63 ASN64 VAL65 ILE66 ARG67 ASP68 ALA69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 ALA83 MET84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 7 ALA10 ARG11 ALA12 LYS13 ALA14 LYS15 THR16 ARG17 SER18 SER19 ARG20 ALA21 GLY22 LEU23 GLN24 PHE25 PRO26 VAL27 GLY28 ARG29 VAL30 HIS31 ARG32 LEU33 LEU34 ARG35 LYS36 GLY37 ASN38 TYR39 SER40 GLU41 ARG42 VAL43 GLY44 ALA45 GLY46 ALA47 PRO48 VAL49 TYR50 LEU51 ALA52 ALA53 VAL54 LEU55 GLU56 TYR57 LEU58 THR59 ALA60 GLU61 ILE62 LEU63 GLU64 LEU65 ALA66 GLY67 ASN68 ALA69 ALA70 ARG71 ASP72 ASN73 LYS74 LYS75 THR76 ARG77 ILE78 ILE79 PRO80 ARG81 HIS82 LEU83 GLN84 LEU85 ALA86 ILE87 ARG88 ASN89 ASP90 GLU91 GLU92 LEU93 ASN94 LYS95 LEU96 LEU97 GLY98 ARG99 VAL100 THR101 ILE102 ALA103 GLN104 GLY105 GLY106 VAL107 LEU108 PRO109 ASN110 ILE111 GLN112 ALA113 VAL114 LEU115 LEU116 PRO117 LYS118
Unit 8 ARG29 LYS30 ARG31 SER32 ARG33 LYS34 GLU35 SER36 TYR37 SER38 ILE39 TYR40 VAL41 TYR42 LYS43 VAL44 LEU45 LYS46 GLN47 VAL48 HIS49 PRO50 ASP51 THR52 GLY53 ILE54 SER55 SER56 LYS57 ALA58 MET59 GLY60 ILE61 MET62 ASN63 SER64 PHE65 VAL66 ASN67 ASP68 ILE69 PHE70 GLU71 ARG72 ILE73 ALA74 GLY75 GLU76 ALA77 SER78 ARG79 LEU80 ALA81 HIS82 TYR83 ASN84 LYS85 ARG86 SER87 THR88 ILE89 THR90 SER91 ARG92 GLU93 ILE94 GLN95 THR96 ALA97 VAL98 ARG99 LEU100 LEU101 LEU102 PRO103 GLY104 GLU105 LEU106 ALA107 LYS108 HIS109 ALA110 VAL111 SER112 GLU113 GLY114 THR115 LYS116 ALA117 VAL118 THR119 LYS120 TYR121 THR122 SER123 ALA124

Other macromolecules
Unit 9 DA1 DT2 DC3 DA4 DA5 DT6 DA7 DT8 DC9 DC10 DA11 DC12 DC13 DT14 DG15 DC16 DA17 DG18 DA19 DT20 DT21 DC22 DT23 DA24 DC25 DC26 DA27 DA28 DA29 DA30 DG31 DT32 DG33 DT34 DA35 DT36 DT37 DT38 DG39 DG40 DA41 DA42 DA43 DC44 DT45 DG46 DC47 DT48 DC49 DC50 DA51 DT52 DC53 DA54 DA55 DA56 DA57 DG58 DG59 DC60 DA61 DT62 DG63 DT64 DT65 DC66 DA67 DG68 DC69 DT70 DG71 DA72 DA73 DC74 DC75 DA76 DG77 DC78 DT79 DG80 DA81 DA82 DC83 DA84 DT85 DG86 DC87 DC88 DT89 DT90 DT91 DT92 DG93 DA94 DT95 DG96 DG97 DA98 DG99 DC100 DA101 DG102 DT103 DT104 DT105 DC106 DC107 DA108 DA109 DA110 DT111 DA112 DC113 DA114 DC115 DT116 3DR117 DT118 DT119 DG120 DG121 DT122 DA123 DG124 DA125 DA126 DT127 DC128 DT129 DG130 DC131 DA132 DG133 DG134 DT135 DG136 DG137 DA138 DT139 DA140 DT141 DT142 DG143 DA144 DT145
Unit 10 DA1 DT2 DC3 DA4 DA5 DT6 DA7 DT8 DC9 DC10 DA11 DC12 DC13 DT14 DG15 DC16 DA17 DG18 DA19 DT20 DT21 DC22 DT23 DA24 DC25 DC26 DA27 DA28 DA29 DA30 DG31 DT32 DG33 DT34 DA35 DT36 DT37 DT38 DG39 DG40 DA41 DA42 DA43 DC44 DT45 DG46 DC47 DT48 DC49 DC50 DA51 DT52 DC53 DA54 DA55 DA56 DA57 DG58 DG59 DC60 DA61 DT62 DG63 DT64 DT65 DC66 DA67 DG68 DC69 DT70 DG71 DG72 DT73 DT74 DC75 DA76 DG77 DC78 DT79 DG80 DA81 DA82 DC83 DA84 DT85 DG86 DC87 DC88 DT89 DT90 DT91 DT92 DG93 DA94 DT95 DG96 DG97 DA98 DG99 DC100 DA101 DG102 DT103 DT104 DT105 DC106 DC107 DA108 DA109 DA110 DT111 DA112 DC113 DA114 DC115 DT116 3DR117 DT118 DT119 DG120 DG121 DT122 DA123 DG124 DA125 DA126 DT127 DC128 DT129 DG130 DC131 DA132 DG133 DG134 DT135 DG136 DG137 DA138 DT139 DA140 DT141 DT142 DG143 DA144 DT145

Ligands
Unit 11 CL201
Unit 12 CL201
Unit 13 MN3001 CL3002
Unit 14 CL2001
Unit 15 MN201 MN202 MN203 MN204 MN205 MN206 MN207 MN208
Unit 16 MN201 MN202 MN203 MN204 MN205 MN206

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany