5JP3 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF XANTHOMONAS CAMPESTRIS EFFECTOR PROTEIN XOPD BO UBIQUITIN
• Keywords: ENZYME, CE CLAN, DEUBIQUITINASE, DESUMOYLASE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5JP3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	XANTHOMONAS OUTER PROTEIN D	A	205	1560	0
2	Protein	XANTHOMONAS OUTER PROTEIN D	C	196	1478	0
3	Protein	XANTHOMONAS OUTER PROTEIN D	E	193	1426	0
4	Protein	POLYUBIQUITIN-B	B	76	582	4
5	Protein	POLYUBIQUITIN-B	D	76	566	4
6	Protein	POLYUBIQUITIN-B	H	76	510	4
7	Protein	XANTHOMONAS OUTER PROTEIN D	G	196	1510	0
8	Protein	POLYUBIQUITIN-B	F	76	544	4
9	Water			43	0	44
total				1137	8176	60

Proteins

Unit 1	PRO 311 GLU 312 ARG 313 ILE 314 ASP 315 VAL 316 ASP 317 ASN 318 LEU 319 PRO 320 SER 321 PRO 322 GLN 323 ASP 324 VAL 325 ALA 326 ASP 327 PRO 328 GLU 329 LEU 330 PRO 331 PRO 332 VAL 333 ARG 334 ALA 335 THR 336 SER 337 TRP 338 LEU 339 LEU 340 ASP 341 GLY 342 HIS 343 LEU 344 ARG 345 ALA 346 TYR 347 THR 348 ASP 349 ASP 350 LEU 351 ALA 352 ARG 353 ARG 354 LEU 355 ARG 356 GLY 357 GLU 358 PRO 359 ASN 360 ALA 361 HIS 362 LEU 363 LEU 364 HIS 365 PHE 366 ALA 367 ASP 368 SER 369 GLN 370 VAL 371 VAL 372 THR 373 MET 374 LEU 375 SER 376 SER 377 ALA 378 ASP 379 PRO 380 ASP 381 GLN 382 GLN 383 ALA 384 ARG 385 ALA 386 GLN 387 ARG 388 LEU 389 LEU 390 ALA 391 GLY 392 ASP 393 ASP 394 ILE 395 PRO 396 PRO 397 ILE 398 VAL 399 PHE 400 LEU 401 PRO 402 ILE 403 ASN 404 GLN 405 PRO 406 ASN 407 ALA 408 HIS 409 TRP 410 SER 411 LEU 412 LEU 413 VAL 414 VAL 415 ASP 416 ARG 417 ARG 418 ASN 419 LYS 420 ASP 421 ALA 422 VAL 423 ALA 424 ALA 425 TYR 426 HIS 427 TYR 428 ASP 429 SER 430 MET 431 ALA 432 GLN 433 LYS 434 ASP 435 PRO 436 GLN 437 GLN 438 ARG 439 TYR 440 LEU 441 ALA 442 ASP 443 MET 444 ALA 445 ALA 446 TYR 447 HIS 448 LEU 449 GLY 450 LEU 451 ASP 452 TYR 453 GLN 454 GLN 455 THR 456 HIS 457 GLU 458 MET 459 PRO 460 ILE 461 ALA 462 ILE 463 GLN 464 SER 465 ASP 466 GLY 467 TYR 468 SER 469 CYS 470 GLY 471 ASP 472 HIS 473 VAL 474 LEU 475 THR 476 GLY 477 ILE 478 GLU 479 VAL 480 LEU 481 ALA 482 HIS 483 ARG 484 VAL 485 LEU 486 ASP 487 GLY 488 THR 489 PHE 490 ASP 491 TYR 492 ALA 493 GLY 494 GLY 495 ARG 496 ASP 497 LEU 498 THR 499 ASP 500 ILE 501 GLU 502 PRO 503 ASP 504 ARG 505 GLY 506 LEU 507 ILE 508 ARG 509 ASP 510 ARG 511 LEU 512 ALA 513 GLN 514 ALA 515
Unit 2	PRO 320 SER 321 PRO 322 GLN 323 ASP 324 VAL 325 ALA 326 ASP 327 PRO 328 GLU 329 LEU 330 PRO 331 PRO 332 VAL 333 ARG 334 ALA 335 THR 336 SER 337 TRP 338 LEU 339 LEU 340 ASP 341 GLY 342 HIS 343 LEU 344 ARG 345 ALA 346 TYR 347 THR 348 ASP 349 ASP 350 LEU 351 ALA 352 ARG 353 ARG 354 LEU 355 ARG 356 GLY 357 GLU 358 PRO 359 ASN 360 ALA 361 HIS 362 LEU 363 LEU 364 HIS 365 PHE 366 ALA 367 ASP 368 SER 369 GLN 370 VAL 371 VAL 372 THR 373 MET 374 LEU 375 SER 376 SER 377 ALA 378 ASP 379 PRO 380 ASP 381 GLN 382 GLN 383 ALA 384 ARG 385 ALA 386 GLN 387 ARG 388 LEU 389 LEU 390 ALA 391 GLY 392 ASP 393 ASP 394 ILE 395 PRO 396 PRO 397 ILE 398 VAL 399 PHE 400 LEU 401 PRO 402 ILE 403 ASN 404 GLN 405 PRO 406 ASN 407 ALA 408 HIS 409 TRP 410 SER 411 LEU 412 LEU 413 VAL 414 VAL 415 ASP 416 ARG 417 ARG 418 ASN 419 LYS 420 ASP 421 ALA 422 VAL 423 ALA 424 ALA 425 TYR 426 HIS 427 TYR 428 ASP 429 SER 430 MET 431 ALA 432 GLN 433 LYS 434 ASP 435 PRO 436 GLN 437 GLN 438 ARG 439 TYR 440 LEU 441 ALA 442 ASP 443 MET 444 ALA 445 ALA 446 TYR 447 HIS 448 LEU 449 GLY 450 LEU 451 ASP 452 TYR 453 GLN 454 GLN 455 THR 456 HIS 457 GLU 458 MET 459 PRO 460 ILE 461 ALA 462 ILE 463 GLN 464 SER 465 ASP 466 GLY 467 TYR 468 SER 469 CYS 470 GLY 471 ASP 472 HIS 473 VAL 474 LEU 475 THR 476 GLY 477 ILE 478 GLU 479 VAL 480 LEU 481 ALA 482 HIS 483 ARG 484 VAL 485 LEU 486 ASP 487 GLY 488 THR 489 PHE 490 ASP 491 TYR 492 ALA 493 GLY 494 GLY 495 ARG 496 ASP 497 LEU 498 THR 499 ASP 500 ILE 501 GLU 502 PRO 503 ASP 504 ARG 505 GLY 506 LEU 507 ILE 508 ARG 509 ASP 510 ARG 511 LEU 512 ALA 513 GLN 514 ALA 515
Unit 3	GLN 323 ASP 324 VAL 325 ALA 326 ASP 327 PRO 328 GLU 329 LEU 330 PRO 331 PRO 332 VAL 333 ARG 334 ALA 335 THR 336 SER 337 TRP 338 LEU 339 LEU 340 ASP 341 GLY 342 HIS 343 LEU 344 ARG 345 ALA 346 TYR 347 THR 348 ASP 349 ASP 350 LEU 351 ALA 352 ARG 353 ARG 354 LEU 355 ARG 356 GLY 357 GLU 358 PRO 359 ASN 360 ALA 361 HIS 362 LEU 363 LEU 364 HIS 365 PHE 366 ALA 367 ASP 368 SER 369 GLN 370 VAL 371 VAL 372 THR 373 MET 374 LEU 375 SER 376 SER 377 ALA 378 ASP 379 PRO 380 ASP 381 GLN 382 GLN 383 ALA 384 ARG 385 ALA 386 GLN 387 ARG 388 LEU 389 LEU 390 ALA 391 GLY 392 ASP 393 ASP 394 ILE 395 PRO 396 PRO 397 ILE 398 VAL 399 PHE 400 LEU 401 PRO 402 ILE 403 ASN 404 GLN 405 PRO 406 ASN 407 ALA 408 HIS 409 TRP 410 SER 411 LEU 412 LEU 413 VAL 414 VAL 415 ASP 416 ARG 417 ARG 418 ASN 419 LYS 420 ASP 421 ALA 422 VAL 423 ALA 424 ALA 425 TYR 426 HIS 427 TYR 428 ASP 429 SER 430 MET 431 ALA 432 GLN 433 LYS 434 ASP 435 PRO 436 GLN 437 GLN 438 ARG 439 TYR 440 LEU 441 ALA 442 ASP 443 MET 444 ALA 445 ALA 446 TYR 447 HIS 448 LEU 449 GLY 450 LEU 451 ASP 452 TYR 453 GLN 454 GLN 455 THR 456 HIS 457 GLU 458 MET 459 PRO 460 ILE 461 ALA 462 ILE 463 GLN 464 SER 465 ASP 466 GLY 467 TYR 468 SER 469 CYS 470 GLY 471 ASP 472 HIS 473 VAL 474 LEU 475 THR 476 GLY 477 ILE 478 GLU 479 VAL 480 LEU 481 ALA 482 HIS 483 ARG 484 VAL 485 LEU 486 ASP 487 GLY 488 THR 489 PHE 490 ASP 491 TYR 492 ALA 493 GLY 494 GLY 495 ARG 496 ASP 497 LEU 498 THR 499 ASP 500 ILE 501 GLU 502 PRO 503 ASP 504 ARG 505 GLY 506 LEU 507 ILE 508 ARG 509 ASP 510 ARG 511 LEU 512 ALA 513 GLN 514 ALA 515
Unit 4	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76
Unit 5	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76
Unit 6	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76
Unit 7	PRO 320 SER 321 PRO 322 GLN 323 ASP 324 VAL 325 ALA 326 ASP 327 PRO 328 GLU 329 LEU 330 PRO 331 PRO 332 VAL 333 ARG 334 ALA 335 THR 336 SER 337 TRP 338 LEU 339 LEU 340 ASP 341 GLY 342 HIS 343 LEU 344 ARG 345 ALA 346 TYR 347 THR 348 ASP 349 ASP 350 LEU 351 ALA 352 ARG 353 ARG 354 LEU 355 ARG 356 GLY 357 GLU 358 PRO 359 ASN 360 ALA 361 HIS 362 LEU 363 LEU 364 HIS 365 PHE 366 ALA 367 ASP 368 SER 369 GLN 370 VAL 371 VAL 372 THR 373 MET 374 LEU 375 SER 376 SER 377 ALA 378 ASP 379 PRO 380 ASP 381 GLN 382 GLN 383 ALA 384 ARG 385 ALA 386 GLN 387 ARG 388 LEU 389 LEU 390 ALA 391 GLY 392 ASP 393 ASP 394 ILE 395 PRO 396 PRO 397 ILE 398 VAL 399 PHE 400 LEU 401 PRO 402 ILE 403 ASN 404 GLN 405 PRO 406 ASN 407 ALA 408 HIS 409 TRP 410 SER 411 LEU 412 LEU 413 VAL 414 VAL 415 ASP 416 ARG 417 ARG 418 ASN 419 LYS 420 ASP 421 ALA 422 VAL 423 ALA 424 ALA 425 TYR 426 HIS 427 TYR 428 ASP 429 SER 430 MET 431 ALA 432 GLN 433 LYS 434 ASP 435 PRO 436 GLN 437 GLN 438 ARG 439 TYR 440 LEU 441 ALA 442 ASP 443 MET 444 ALA 445 ALA 446 TYR 447 HIS 448 LEU 449 GLY 450 LEU 451 ASP 452 TYR 453 GLN 454 GLN 455 THR 456 HIS 457 GLU 458 MET 459 PRO 460 ILE 461 ALA 462 ILE 463 GLN 464 SER 465 ASP 466 GLY 467 TYR 468 SER 469 CYS 470 GLY 471 ASP 472 HIS 473 VAL 474 LEU 475 THR 476 GLY 477 ILE 478 GLU 479 VAL 480 LEU 481 ALA 482 HIS 483 ARG 484 VAL 485 LEU 486 ASP 487 GLY 488 THR 489 PHE 490 ASP 491 TYR 492 ALA 493 GLY 494 GLY 495 ARG 496 ASP 497 LEU 498 THR 499 ASP 500 ILE 501 GLU 502 PRO 503 ASP 504 ARG 505 GLY 506 LEU 507 ILE 508 ARG 509 ASP 510 ARG 511 LEU 512 ALA 513 GLN 514 ALA 515
Unit 8	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76