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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE UNLIGANDED FORM OF HCN2 CNBD
Keywords HCN CHANNELS, CYCLIC NUCLEOTIDE REGULATED CHANNELS, CYCLIC N BINDING DOMAIN, TRANSPORT PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JON     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 509 3953 0
2  Protein    B 506 3926 0
3  Ligand    C 2 0 23
4  Ligand    D 2 0 23
5  Ligand    A 1 0 4
6  Ligand    B 2 0 8
7 Water     369 0 369
total       1391 7879 427
Proteins
Unit 1 ILE-367 GLU-366 GLU-365 GLY-364 LYS-363 LEU-362 VAL-361 ILE-360 TRP-359 ILE-358 ASN-357 GLY-356 ASP-355 LYS-354 GLY-353 TYR-352 ASN-351 GLY-350 LEU-349 ALA-348 GLU-347 VAL-346 GLY-345 LYS-344 LYS-343 PHE-342 GLU-341 LYS-340 ASP-339 THR-338 GLY-337 ILE-336 LYS-335 VAL-334 THR-333 VAL-332 GLU-331 HIS-330 PRO-329 ASP-328 LYS-327 LEU-326 GLU-325 GLU-324 LYS-323 PHE-322 PRO-321 GLN-320 VAL-319 ALA-318 ALA-317 THR-316 GLY-315 ASP-314 GLY-313 PRO-312 ASP-311 ILE-310 ILE-309 PHE-308 TRP-307 ALA-306 HIS-305 ASP-304 ARG-303 PHE-302 GLY-301 GLY-300 TYR-299 ALA-298 GLN-297 SER-296 GLY-295 LEU-294 LEU-293 ALA-292 GLU-291 ILE-290 THR-289 PRO-288 ASP-287 LYS-286 ALA-285 PHE-284 GLN-283 ASP-282 LYS-281 LEU-280 TYR-279 PRO-278 PHE-277 THR-276 TRP-275 ASP-274 ALA-273 VAL-272 ARG-271 TYR-270 ASN-269 GLY-268 LYS-267 LEU-266 ILE-265 ALA-264 TYR-263 PRO-262 ILE-261 ALA-260 VAL-259 GLU-258 ALA-257 LEU-256 SER-255 LEU-254 ILE-253 TYR-252 ASN-251 LYS-250 ASP-249 LEU-248 LEU-247 PRO-246 ASN-245 PRO-244 PRO-243 LYS-242 THR-241 TRP-240 GLU-239 GLU-238 ILE-237 PRO-236 ALA-235 LEU-234 ASP-233 LYS-232 GLU-231 LEU-230 LYS-229 ALA-228 LYS-227 GLY-226 LYS-225 SER-224 ALA-223 LEU-222 MET-221 PHE-220 ASN-219 LEU-218 GLN-217 GLU-216 PRO-215 TYR-214 PHE-213 THR-212 TRP-211 PRO-210 LEU-209 ILE-208 ALA-207 ALA-206 ASP-205 GLY-204 GLY-203 TYR-202 ALA-201 PHE-200 LYS-199 TYR-198 GLU-197 ASN-196 GLY-195 LYS-194 TYR-193 ASP-192 ILE-191 LYS-190 ASP-189 VAL-188 GLY-187 VAL-186 ASP-185 ASN-184 ALA-183 GLY-182 ALA-181 LYS-180 ALA-179 GLY-178 LEU-177 THR-176 PHE-175 LEU-174 VAL-173 ASP-172 LEU-171 ILE-170 LYS-169 ASN-168 LYS-167 HIS-166 MET-165 ASN-164 ALA-163 ASP-162 THR-161 ASP-160 TYR-159 SER-158 ILE-157 ALA-156 GLU-155 ALA-154 ALA-153 PHE-152 ASN-151 LYS-150 GLY-149 GLU-148 THR-147 ALA-146 MET-145 THR-144 ILE-143 ASN-142 GLY-141 PRO-140 TRP-139 ALA-138 TRP-137 SER-136 ASN-135 ILE-134 ASP-133 THR-132 SER-131 LYS-130 VAL-129 ASN-128 TYR-127 GLY-126 VAL-125 THR-124 VAL-123 LEU-122 PRO-121 THR-120 PHE-119 LYS-118 GLY-117 GLN-116 PRO-115 SER-114 LYS-113 PRO-112 PHE-111 VAL-110 GLY-109 VAL-108 LEU-107 SER-106 ALA-105 GLY-104 ILE-103 ASN-102 ALA-101 ALA-100 SER-99 PRO-98 ASN-97 LYS-96 GLU-95 LEU-94 ALA-93 LYS-92 GLU-91 PHE-90 LEU-89 GLU-88 ASN-87 TYR-86 LEU-85 LEU-84 THR-83 ASP-82 GLU-81 GLY-80 LEU-79 GLU-78 ALA-77 VAL-76 ASN-75 LYS-74 ASP-73 LYS-72 PRO-71 LEU-70 GLY-69 ALA-68 VAL-67 ALA-66 LEU-65 LYS-64 SER-63 TYR-62 GLU-61 GLU-60 GLU-59 LEU-58 ALA-57 LYS-56 ASP-55 PRO-54 ARG-53 ILE-52 ALA-51 ALA-50 THR-49 MET-48 GLU-47 ASN-46 ALA-45 GLN-44 LYS-43 GLY-42 GLU-41 ILE-40 MET-39 PRO-38 ASN-37 ILE-36 PRO-35 GLN-34 MET-33 SER-32 ALA-31 PHE-30 TRP-29 TYR-28 ALA-27 VAL-26 ARG-25 THR-24 ALA-23 VAL-22 ILE-21 ASN-20 ALA-19 ALA-18 SER-17 GLY-16 ARG-15 GLN-14 THR-13 VAL-12 ASP-11 GLU-10 ALA-9 LEU-8 LYS-7 ASP-6 ALA-5 GLN-4 THR-3 ASN-2 ALA-1 ALA0 GLU494 LEU495 ASN496 GLY497 PRO498 LEU499 ARG500 GLU501 GLU502 ILE503 VAL504 ASN505 PHE506 ASN507 CYS508 ARG509 LYS510 LEU511 VAL512 ALA513 SER514 MET515 PRO516 LEU517 PHE518 ALA519 ASN520 ALA521 ASP522 PRO523 ASN524 PHE525 VAL526 THR527 ALA528 MET529 LEU530 THR531 LYS532 LEU533 LYS534 PHE535 GLU536 VAL537 PHE538 GLN539 PRO540 GLY541 ASP542 TYR543 ILE544 ILE545 ARG546 GLU547 GLY548 THR549 ILE550 GLY551 LYS552 LYS553 MET554 TYR555 PHE556 ILE557 GLN558 HIS559 GLY560 VAL561 VAL562 SER563 VAL564 LEU565 THR566 LYS567 GLY568 ASN569 LYS570 GLU571 MET572 LYS573 LEU574 SER575 ASP576 GLY577 SER578 TYR579 PHE580 GLY581 GLU582 ILE583 CYS584 LEU585 LEU586 THR587 ARG588 GLY589 ARG590 ARG591 THR592 ALA593 SER594 VAL595 ARG596 ALA597 ASP598 THR599 TYR600 CYS601 ARG602 LEU603 TYR604 SER605 LEU606 SER607 VAL608 ASP609 ASN610 PHE611 ASN612 GLU613 VAL614 LEU615 GLU616 GLU617 TYR618 PRO619 MET620 MET621 ARG622 ARG623 ALA624 PHE625 GLU626 THR627 VAL628 ALA629 ILE630 ASP631 ARG632 LEU633 ASP634
Unit 2 LYS-368 ILE-367 GLU-366 GLU-365 GLY-364 LYS-363 LEU-362 VAL-361 ILE-360 TRP-359 ILE-358 ASN-357 GLY-356 ASP-355 LYS-354 GLY-353 TYR-352 ASN-351 GLY-350 LEU-349 ALA-348 GLU-347 VAL-346 GLY-345 LYS-344 LYS-343 PHE-342 GLU-341 LYS-340 ASP-339 THR-338 GLY-337 ILE-336 LYS-335 VAL-334 THR-333 VAL-332 GLU-331 HIS-330 PRO-329 ASP-328 LYS-327 LEU-326 GLU-325 GLU-324 LYS-323 PHE-322 PRO-321 GLN-320 VAL-319 ALA-318 ALA-317 THR-316 GLY-315 ASP-314 GLY-313 PRO-312 ASP-311 ILE-310 ILE-309 PHE-308 TRP-307 ALA-306 HIS-305 ASP-304 ARG-303 PHE-302 GLY-301 GLY-300 TYR-299 ALA-298 GLN-297 SER-296 GLY-295 LEU-294 LEU-293 ALA-292 GLU-291 ILE-290 THR-289 PRO-288 ASP-287 LYS-286 ALA-285 PHE-284 GLN-283 ASP-282 LYS-281 LEU-280 TYR-279 PRO-278 PHE-277 THR-276 TRP-275 ASP-274 ALA-273 VAL-272 ARG-271 TYR-270 ASN-269 GLY-268 LYS-267 LEU-266 ILE-265 ALA-264 TYR-263 PRO-262 ILE-261 ALA-260 VAL-259 GLU-258 ALA-257 LEU-256 SER-255 LEU-254 ILE-253 TYR-252 ASN-251 LYS-250 ASP-249 LEU-248 LEU-247 PRO-246 ASN-245 PRO-244 PRO-243 LYS-242 THR-241 TRP-240 GLU-239 GLU-238 ILE-237 PRO-236 ALA-235 LEU-234 ASP-233 LYS-232 GLU-231 LEU-230 LYS-229 ALA-228 LYS-227 GLY-226 LYS-225 SER-224 ALA-223 LEU-222 MET-221 PHE-220 ASN-219 LEU-218 GLN-217 GLU-216 PRO-215 TYR-214 PHE-213 THR-212 TRP-211 PRO-210 LEU-209 ILE-208 ALA-207 ALA-206 ASP-205 GLY-204 GLY-203 TYR-202 ALA-201 PHE-200 LYS-199 TYR-198 GLU-197 ASN-196 GLY-195 LYS-194 TYR-193 ASP-192 ILE-191 LYS-190 ASP-189 VAL-188 GLY-187 VAL-186 ASP-185 ASN-184 ALA-183 GLY-182 ALA-181 LYS-180 ALA-179 GLY-178 LEU-177 THR-176 PHE-175 LEU-174 VAL-173 ASP-172 LEU-171 ILE-170 LYS-169 ASN-168 LYS-167 HIS-166 MET-165 ASN-164 ALA-163 ASP-162 THR-161 ASP-160 TYR-159 SER-158 ILE-157 ALA-156 GLU-155 ALA-154 ALA-153 PHE-152 ASN-151 LYS-150 GLY-149 GLU-148 THR-147 ALA-146 MET-145 THR-144 ILE-143 ASN-142 GLY-141 PRO-140 TRP-139 ALA-138 TRP-137 SER-136 ASN-135 ILE-134 ASP-133 THR-132 SER-131 LYS-130 VAL-129 ASN-128 TYR-127 GLY-126 VAL-125 THR-124 VAL-123 LEU-122 PRO-121 THR-120 PHE-119 LYS-118 GLY-117 GLN-116 PRO-115 SER-114 LYS-113 PRO-112 PHE-111 VAL-110 GLY-109 VAL-108 LEU-107 SER-106 ALA-105 GLY-104 ILE-103 ASN-102 ALA-101 ALA-100 SER-99 PRO-98 ASN-97 LYS-96 GLU-95 LEU-94 ALA-93 LYS-92 GLU-91 PHE-90 LEU-89 GLU-88 ASN-87 TYR-86 LEU-85 LEU-84 THR-83 ASP-82 GLU-81 GLY-80 LEU-79 GLU-78 ALA-77 VAL-76 ASN-75 LYS-74 ASP-73 LYS-72 PRO-71 LEU-70 GLY-69 ALA-68 VAL-67 ALA-66 LEU-65 LYS-64 SER-63 TYR-62 GLU-61 GLU-60 GLU-59 LEU-58 ALA-57 LYS-56 ASP-55 PRO-54 ARG-53 ILE-52 ALA-51 ALA-50 THR-49 MET-48 GLU-47 ASN-46 ALA-45 GLN-44 LYS-43 GLY-42 GLU-41 ILE-40 MET-39 PRO-38 ASN-37 ILE-36 PRO-35 GLN-34 MET-33 SER-32 ALA-31 PHE-30 TRP-29 TYR-28 ALA-27 VAL-26 ARG-25 THR-24 ALA-23 VAL-22 ILE-21 ASN-20 ALA-19 ALA-18 SER-17 GLY-16 ARG-15 GLN-14 THR-13 VAL-12 ASP-11 GLU-10 ALA-9 LEU-8 LYS-7 ASP-6 ALA-5 GLN-4 THR-3 ASN-2 ALA-1 ALA0 GLU494 LEU495 ASN496 GLY497 PRO498 LEU499 ARG500 GLU501 GLU502 ILE503 VAL504 ASN505 PHE506 ASN507 CYS508 ARG509 LYS510 LEU511 VAL512 ALA513 SER514 MET515 PRO516 LEU517 PHE518 ALA519 ASN520 ALA521 ASP522 PRO523 ASN524 PHE525 VAL526 THR527 ALA528 MET529 LEU530 THR531 LYS532 LEU533 LYS534 PHE535 GLU536 VAL537 PHE538 GLN539 PRO540 GLY541 ASP542 TYR543 ILE544 ILE545 ARG546 GLU547 GLY548 THR549 ILE550 GLY551 LYS552 LYS553 MET554 TYR555 PHE556 ILE557 GLN558 HIS559 GLY560 VAL561 VAL562 SER563 VAL564 LEU565 THR566 LYS567 GLY568 ASN569 LYS570 GLU571 MET572 LYS573 LEU574 SER575 ASP576 GLY577 SER578 TYR579 PHE580 GLY581 GLU582 ILE583 CYS584 LEU585 LEU586 THR587 ARG588 GLY589 ARG590 ARG591 THR592 ALA593 SER594 VAL595 ARG596 ALA597 ASP598 THR599 TYR600 CYS601 ARG602 LEU603 TYR604 SER605 LEU606 SER607 VAL608 ASP609 ASN610 PHE611 ASN612 GLU613 VAL614 LEU615 GLU616 GLU617 TYR618 PRO619 MET620 MET621 ARG622 ARG623 ALA624 PHE625 GLU626 THR627 VAL628 ALA629 ILE630
Ligands
Unit 3 GLC1 GLC2
Unit 4 GLC1 GLC2
Unit 5 NO3702
Unit 6 NO3702 NO3703
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany