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Sequence, Chains, Asymmetric and Biological Units

Title RECEPTOR BINDING DOMAIN OF BOTULINUM NEUROTOXIN A IN COMPLEX HUMAN GLYCOSYLATED SV2C
Keywords GLYCOSYLATION, BOTULINUM NEUROTOXIN, RECEPTOR BINDING DOMAIN HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JLV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BOTULINUM NEUROTOXIN TYPE A  A 425 3500 0
2  Protein   BOTULINUM NEUROTOXIN TYPE A  B 425 3500 0
3  Protein   SYNAPTIC VESICLE GLYCOPROTEIN 2C  C 97 812 0
4  Protein   SYNAPTIC VESICLE GLYCOPROTEIN 2C  D 91 764 0
5  Ligand    E 4 0 49
6  Ligand    F 3 0 38
7  Ligand   BOTULINUM NEUROTOXIN TYPE A  A 3 0 14
8  Ligand   BOTULINUM NEUROTOXIN TYPE A  B 3 0 13
9  Ligand   SYNAPTIC VESICLE GLYCOPROTEIN 2C  C 1 0 14
10 Water     659 0 659
total       1711 8576 787
Proteins
Unit 1 PRO870 MET871 ASN872 ILE873 ILE874 ASN875 THR876 SER877 ILE878 LEU879 ASN880 LEU881 ARG882 TYR883 GLU884 SER885 ASN886 HIS887 LEU888 ILE889 ASP890 LEU891 SER892 ARG893 TYR894 ALA895 SER896 LYS897 ILE898 ASN899 ILE900 GLY901 SER902 LYS903 VAL904 ASN905 PHE906 ASP907 PRO908 ILE909 ASP910 LYS911 ASN912 GLN913 ILE914 GLN915 LEU916 PHE917 ASN918 LEU919 GLU920 SER921 SER922 LYS923 ILE924 GLU925 VAL926 ILE927 LEU928 LYS929 ASN930 ALA931 ILE932 VAL933 TYR934 ASN935 SER936 MET937 TYR938 GLU939 ASN940 PHE941 SER942 THR943 SER944 PHE945 TRP946 ILE947 ARG948 ILE949 PRO950 LYS951 TYR952 PHE953 ASN954 SER955 ILE956 SER957 LEU958 ASN959 ASN960 GLU961 TYR962 THR963 ILE964 ILE965 ASN966 CYS967 MET968 GLU969 ASN970 ASN971 SER972 GLY973 TRP974 LYS975 VAL976 SER977 LEU978 ASN979 TYR980 GLY981 GLU982 ILE983 ILE984 TRP985 THR986 LEU987 GLN988 ASP989 THR990 GLN991 GLU992 ILE993 LYS994 GLN995 ARG996 VAL997 VAL998 PHE999 LYS1000 TYR1001 SER1002 GLN1003 MET1004 ILE1005 ASN1006 ILE1007 SER1008 ASP1009 TYR1010 ILE1011 ASN1012 ARG1013 TRP1014 ILE1015 PHE1016 VAL1017 THR1018 ILE1019 THR1020 ASN1021 ASN1022 ARG1023 LEU1024 ASN1025 ASN1026 SER1027 LYS1028 ILE1029 TYR1030 ILE1031 ASN1032 GLY1033 ARG1034 LEU1035 ILE1036 ASP1037 GLN1038 LYS1039 PRO1040 ILE1041 SER1042 ASN1043 LEU1044 GLY1045 ASN1046 ILE1047 HIS1048 ALA1049 SER1050 ASN1051 ASN1052 ILE1053 MET1054 PHE1055 LYS1056 LEU1057 ASP1058 GLY1059 CYS1060 ARG1061 ASP1062 THR1063 HIS1064 ARG1065 TYR1066 ILE1067 TRP1068 ILE1069 LYS1070 TYR1071 PHE1072 ASN1073 LEU1074 PHE1075 ASP1076 LYS1077 GLU1078 LEU1079 ASN1080 GLU1081 LYS1082 GLU1083 ILE1084 LYS1085 ASP1086 LEU1087 TYR1088 ASP1089 ASN1090 GLN1091 SER1092 ASN1093 SER1094 GLY1095 ILE1096 LEU1097 LYS1098 ASP1099 PHE1100 TRP1101 GLY1102 ASP1103 TYR1104 LEU1105 GLN1106 TYR1107 ASP1108 LYS1109 PRO1110 TYR1111 TYR1112 MET1113 LEU1114 ASN1115 LEU1116 TYR1117 ASP1118 PRO1119 ASN1120 LYS1121 TYR1122 VAL1123 ASP1124 VAL1125 ASN1126 ASN1127 VAL1128 GLY1129 ILE1130 ARG1131 GLY1132 TYR1133 MET1134 TYR1135 LEU1136 LYS1137 GLY1138 PRO1139 ARG1140 GLY1141 SER1142 VAL1143 MET1144 THR1145 THR1146 ASN1147 ILE1148 TYR1149 LEU1150 ASN1151 SER1152 SER1153 LEU1154 TYR1155 ARG1156 GLY1157 ALA1158 LYS1159 PHE1160 ILE1161 ILE1162 LYS1163 LYS1164 TYR1165 ALA1166 ASN1169 LYS1170 ASP1171 ASN1172 ILE1173 VAL1174 ARG1175 ASN1176 ASN1177 ASP1178 ARG1179 VAL1180 TYR1181 ILE1182 ASN1183 VAL1184 VAL1185 VAL1186 LYS1187 ASN1188 LYS1189 GLU1190 TYR1191 ARG1192 LEU1193 ALA1194 THR1195 ASN1196 ALA1197 SER1198 GLN1199 ALA1200 GLY1201 VAL1202 GLU1203 LYS1204 ILE1205 LEU1206 SER1207 ALA1208 LEU1209 GLU1210 ILE1211 PRO1212 ASP1213 VAL1214 GLY1215 ASN1216 LEU1217 SER1218 GLN1219 VAL1220 VAL1221 VAL1222 MET1223 LYS1224 SER1225 LYS1226 ASN1227 ASP1228 GLN1229 GLY1230 ILE1231 THR1232 ASN1233 LYS1234 CYS1235 LYS1236 MET1237 ASN1238 LEU1239 GLN1240 ASP1241 ASN1242 ASN1243 GLY1244 ASN1245 ASP1246 ILE1247 GLY1248 PHE1249 ILE1250 GLY1251 PHE1252 HIS1253 GLN1254 PHE1255 ASN1256 ASN1257 ILE1258 ALA1259 LYS1260 LEU1261 VAL1262 ALA1263 SER1264 ASN1265 TRP1266 TYR1267 ASN1268 ARG1269 GLN1270 ILE1271 GLU1272 ARG1273 SER1274 SER1275 ARG1276 THR1277 LEU1278 GLY1279 CYS1280 SER1281 TRP1282 GLU1283 PHE1284 ILE1285 PRO1286 VAL1287 ASP1288 ASP1289 GLY1290 TRP1291 GLY1292 GLU1293 ARG1294 PRO1295 LEU1296
Unit 2 PRO870 MET871 ASN872 ILE873 ILE874 ASN875 THR876 SER877 ILE878 LEU879 ASN880 LEU881 ARG882 TYR883 GLU884 SER885 ASN886 HIS887 LEU888 ILE889 ASP890 LEU891 SER892 ARG893 TYR894 ALA895 SER896 LYS897 ILE898 ASN899 ILE900 GLY901 SER902 LYS903 VAL904 ASN905 PHE906 ASP907 PRO908 ILE909 ASP910 LYS911 ASN912 GLN913 ILE914 GLN915 LEU916 PHE917 ASN918 LEU919 GLU920 SER921 SER922 LYS923 ILE924 GLU925 VAL926 ILE927 LEU928 LYS929 ASN930 ALA931 ILE932 VAL933 TYR934 ASN935 SER936 MET937 TYR938 GLU939 ASN940 PHE941 SER942 THR943 SER944 PHE945 TRP946 ILE947 ARG948 ILE949 PRO950 LYS951 TYR952 PHE953 ASN954 SER955 ILE956 SER957 LEU958 ASN959 ASN960 GLU961 TYR962 THR963 ILE964 ILE965 ASN966 CYS967 MET968 GLU969 ASN970 ASN971 SER972 GLY973 TRP974 LYS975 VAL976 SER977 LEU978 ASN979 TYR980 GLY981 GLU982 ILE983 ILE984 TRP985 THR986 LEU987 GLN988 ASP989 THR990 GLN991 GLU992 ILE993 LYS994 GLN995 ARG996 VAL997 VAL998 PHE999 LYS1000 TYR1001 SER1002 GLN1003 MET1004 ILE1005 ASN1006 ILE1007 SER1008 ASP1009 TYR1010 ILE1011 ASN1012 ARG1013 TRP1014 ILE1015 PHE1016 VAL1017 THR1018 ILE1019 THR1020 ASN1021 ASN1022 ARG1023 LEU1024 ASN1025 ASN1026 SER1027 LYS1028 ILE1029 TYR1030 ILE1031 ASN1032 GLY1033 ARG1034 LEU1035 ILE1036 ASP1037 GLN1038 LYS1039 PRO1040 ILE1041 SER1042 ASN1043 LEU1044 GLY1045 ASN1046 ILE1047 HIS1048 ALA1049 SER1050 ASN1051 ASN1052 ILE1053 MET1054 PHE1055 LYS1056 LEU1057 ASP1058 GLY1059 CYS1060 ARG1061 ASP1062 THR1063 HIS1064 ARG1065 TYR1066 ILE1067 TRP1068 ILE1069 LYS1070 TYR1071 PHE1072 ASN1073 LEU1074 PHE1075 ASP1076 LYS1077 GLU1078 LEU1079 ASN1080 GLU1081 LYS1082 GLU1083 ILE1084 LYS1085 ASP1086 LEU1087 TYR1088 ASP1089 ASN1090 GLN1091 SER1092 ASN1093 SER1094 GLY1095 ILE1096 LEU1097 LYS1098 ASP1099 PHE1100 TRP1101 GLY1102 ASP1103 TYR1104 LEU1105 GLN1106 TYR1107 ASP1108 LYS1109 PRO1110 TYR1111 TYR1112 MET1113 LEU1114 ASN1115 LEU1116 TYR1117 ASP1118 PRO1119 ASN1120 LYS1121 TYR1122 VAL1123 ASP1124 VAL1125 ASN1126 ASN1127 VAL1128 GLY1129 ILE1130 ARG1131 GLY1132 TYR1133 MET1134 TYR1135 LEU1136 LYS1137 GLY1138 PRO1139 ARG1140 GLY1141 SER1142 VAL1143 MET1144 THR1145 THR1146 ASN1147 ILE1148 TYR1149 LEU1150 ASN1151 SER1152 SER1153 LEU1154 TYR1155 ARG1156 GLY1157 ALA1158 LYS1159 PHE1160 ILE1161 ILE1162 LYS1163 LYS1164 TYR1165 ALA1166 ASN1169 LYS1170 ASP1171 ASN1172 ILE1173 VAL1174 ARG1175 ASN1176 ASN1177 ASP1178 ARG1179 VAL1180 TYR1181 ILE1182 ASN1183 VAL1184 VAL1185 VAL1186 LYS1187 ASN1188 LYS1189 GLU1190 TYR1191 ARG1192 LEU1193 ALA1194 THR1195 ASN1196 ALA1197 SER1198 GLN1199 ALA1200 GLY1201 VAL1202 GLU1203 LYS1204 ILE1205 LEU1206 SER1207 ALA1208 LEU1209 GLU1210 ILE1211 PRO1212 ASP1213 VAL1214 GLY1215 ASN1216 LEU1217 SER1218 GLN1219 VAL1220 VAL1221 VAL1222 MET1223 LYS1224 SER1225 LYS1226 ASN1227 ASP1228 GLN1229 GLY1230 ILE1231 THR1232 ASN1233 LYS1234 CYS1235 LYS1236 MET1237 ASN1238 LEU1239 GLN1240 ASP1241 ASN1242 ASN1243 GLY1244 ASN1245 ASP1246 ILE1247 GLY1248 PHE1249 ILE1250 GLY1251 PHE1252 HIS1253 GLN1254 PHE1255 ASN1256 ASN1257 ILE1258 ALA1259 LYS1260 LEU1261 VAL1262 ALA1263 SER1264 ASN1265 TRP1266 TYR1267 ASN1268 ARG1269 GLN1270 ILE1271 GLU1272 ARG1273 SER1274 SER1275 ARG1276 THR1277 LEU1278 GLY1279 CYS1280 SER1281 TRP1282 GLU1283 PHE1284 ILE1285 PRO1286 VAL1287 ASP1288 ASP1289 GLY1290 TRP1291 GLY1292 GLU1293 ARG1294 PRO1295 LEU1296
Unit 3 GLU470 GLY471 ARG472 VAL473 GLU474 ARG475 ASP476 LYS477 TYR478 ALA479 ASN480 PHE481 THR482 ILE483 ASN484 PHE485 THR486 MET487 GLU488 ASN489 GLN490 ILE491 HIS492 THR493 GLY494 MET495 GLU496 TYR497 ASP498 ASN499 GLY500 ARG501 PHE502 ILE503 GLY504 VAL505 LYS506 PHE507 LYS508 SER509 VAL510 THR511 PHE512 LYS513 ASP514 SER515 VAL516 PHE517 LYS518 SER519 CYS520 THR521 PHE522 GLU523 ASP524 VAL525 THR526 SER527 VAL528 ASN529 THR530 TYR531 PHE532 LYS533 ASN534 CYS535 THR536 PHE537 ILE538 ASP539 THR540 VAL541 PHE542 ASP543 ASN544 THR545 ASP546 PHE547 GLU548 PRO549 TYR550 LYS551 PHE552 ILE553 ASP554 SER555 GLU556 PHE557 LYS558 ASN559 CYS560 SER561 PHE562 PHE563 HIS564 ASN565 LYS566
Unit 4 GLU474 ARG475 ASP476 LYS477 TYR478 ALA479 ASN480 PHE481 THR482 ILE483 ASN484 PHE485 THR486 MET487 GLU488 ASN489 GLN490 ILE491 HIS492 THR493 GLY494 MET495 GLU496 TYR497 ASP498 ASN499 GLY500 ARG501 PHE502 ILE503 GLY504 VAL505 LYS506 PHE507 LYS508 SER509 VAL510 THR511 PHE512 LYS513 ASP514 SER515 VAL516 PHE517 LYS518 SER519 CYS520 THR521 PHE522 GLU523 ASP524 VAL525 THR526 SER527 VAL528 ASN529 THR530 TYR531 PHE532 LYS533 ASN534 CYS535 THR536 PHE537 ILE538 ASP539 THR540 VAL541 PHE542 ASP543 ASN544 THR545 ASP546 PHE547 GLU548 PRO549 TYR550 LYS551 PHE552 ILE553 ASP554 SER555 GLU556 PHE557 LYS558 ASN559 CYS560 SER561 PHE562 PHE563 HIS564
Ligands
Unit 5 NAG1 NAG2 BMA3 FUC4
Unit 6 NAG1 NAG2 FUC3
Unit 7 ACT1301 PO41302 PO41303
Unit 8 ACT1301 ACT1302 PO41303
Unit 9 NAG605
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany