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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN IZUMO1-JUNO COMPLEX (CRYSTAL FORM
Keywords FERTILIZATION, IZUMO1, JUNO, CELL ADHESION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5JKE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   IZUMO SPERM-EGG FUSION PROTEIN 1  A 232 1849 0
2  Protein   SPERM-EGG FUSION PROTEIN JUNO  B 203 1648 0
3  Protein   IZUMO SPERM-EGG FUSION PROTEIN 1  C 232 1849 0
4  Protein   SPERM-EGG FUSION PROTEIN JUNO  D 203 1648 0
5  Ligand   IZUMO SPERM-EGG FUSION PROTEIN 1  A 2 0 19
6  Ligand   SPERM-EGG FUSION PROTEIN JUNO  B 2 0 15
7  Ligand   IZUMO SPERM-EGG FUSION PROTEIN 1  C 1 0 14
8  Ligand   SPERM-EGG FUSION PROTEIN JUNO  D 3 0 20
9 Water     4 0 4
total       882 6994 72

Proteins
Unit 1 ARG18 SER19 PRO20 TRP21 CYS22 VAL23 ILE24 CYS25 ASP26 PRO27 SER28 VAL29 VAL30 LEU31 ALA32 LEU33 LYS34 SER35 LEU36 GLU37 LYS38 ASP39 TYR40 LEU41 PRO42 GLY43 HIS44 LEU45 ASP46 ALA47 LYS48 HIS49 HIS50 LYS51 ALA52 MET53 MET54 GLU55 ARG56 VAL57 GLU58 ASN59 ALA60 VAL61 LYS62 ASP63 PHE64 GLN65 GLU66 LEU67 ALA73 TYR74 MET75 GLY76 VAL77 VAL78 ASP79 GLU80 ALA81 THR82 LEU83 GLN84 LYS85 GLY86 SER87 TRP88 SER89 LEU90 LEU91 LYS92 ASP93 LEU94 LYS95 ARG96 ILE97 THR98 ASP99 SER100 ASP101 VAL102 LYS103 GLY104 ASP105 LEU106 PHE107 VAL108 LYS109 GLU110 LEU111 PHE112 TRP113 MET114 LEU115 HIS116 LEU117 GLN118 LYS119 GLU120 THR121 PHE122 ALA123 THR124 TYR125 VAL126 ALA127 ARG128 PHE129 GLN130 LYS131 GLU132 ALA133 TYR134 CYS135 PRO136 ASN137 LYS138 CYS139 GLY140 VAL141 MET142 LEU143 GLN144 THR145 LEU146 ILE147 TRP148 CYS149 LYS150 ASN151 CYS152 LYS153 LYS154 GLU155 VAL156 HIS157 ALA158 CYS159 ARG160 LYS161 SER162 TYR163 ASP164 CYS165 GLY166 GLU167 ARG168 ASN169 VAL170 GLU171 VAL172 PRO173 GLN174 MET175 GLU176 ASP177 MET178 ILE179 LEU180 ASP181 CYS182 GLU183 LEU184 ASN185 TRP186 HIS187 GLN188 ALA189 SER190 GLU191 GLY192 LEU193 THR194 ASP195 TYR196 SER197 PHE198 TYR199 ARG200 VAL201 TRP202 GLY203 ASN204 ASN205 THR206 GLU207 THR208 LEU209 VAL210 SER211 LYS212 GLY213 LYS214 GLU215 ALA216 THR217 LEU218 THR219 LYS220 PRO221 MET222 VAL223 GLY224 PRO225 GLU226 ASP227 ALA228 GLY229 SER230 TYR231 ARG232 CYS233 GLU234 LEU235 GLY236 SER237 VAL238 ASN239 SER240 SER241 PRO242 ALA243 THR244 ILE245 ILE246 ASN247 PHE248 HIS249 VAL250 THR251 VAL252 LEU253 PRO254
Unit 2 PRO18 TRP19 GLY20 ASP21 GLU22 LEU23 LEU24 ASN25 ILE26 CYS27 MET28 ASN29 ALA30 LYS31 HIS32 HIS33 LYS34 ARG35 VAL36 PRO37 SER38 PRO39 GLU40 ASP41 LYS42 LEU43 TYR44 GLU45 GLU46 CYS47 ILE48 PRO49 TRP50 LYS51 ASP52 ASN53 ALA54 CYS55 CYS56 THR57 LEU58 THR59 THR60 SER61 TRP62 GLU63 ALA64 HIS65 LEU66 ASP67 VAL68 SER69 PRO70 LEU71 TYR72 ASN73 PHE74 SER75 LEU76 PHE77 HIS78 CYS79 GLY80 LEU81 LEU82 MET83 PRO84 GLY85 CYS86 ARG87 LYS88 HIS89 PHE90 ILE91 GLN92 ALA93 ILE94 CYS95 PHE96 TYR97 GLU98 CYS99 SER100 PRO101 ASN102 LEU103 GLY104 PRO105 TRP106 ILE107 GLN108 PRO109 VAL110 GLY123 GLU124 ARG125 VAL126 VAL127 ASN128 VAL129 PRO130 LEU131 CYS132 GLN133 GLU134 ASP135 CYS136 GLU137 GLU138 TRP139 TRP140 GLU141 ASP142 CYS143 ARG144 MET145 SER146 TYR147 THR148 CYS149 LYS150 SER151 ASN152 TRP153 ARG154 GLY155 GLY156 TRP157 ASP158 TRP159 SER160 GLN161 GLY162 LYS163 ASN164 ARG165 CYS166 PRO167 LYS168 GLY169 ALA170 GLN171 CYS172 LEU173 PRO174 PHE175 SER176 HIS177 TYR178 PHE179 PRO180 THR181 PRO182 ALA183 ASP184 LEU185 CYS186 GLU187 LYS188 THR189 TRP190 SER191 ASN192 SER193 PHE194 LYS195 ALA196 SER197 PRO198 GLU199 ARG200 ARG201 ASN202 SER203 GLY204 ARG205 CYS206 LEU207 GLN208 LYS209 TRP210 PHE211 GLU212 PRO213 ALA214 GLN215 GLY216 ASN217 PRO218 ASN219 VAL220 ALA221 VAL222 ALA223 ARG224 LEU225 PHE226 ALA227 SER228 GLU229 PHE230 LEU231 GLU232
Unit 3 ARG18 SER19 PRO20 TRP21 CYS22 VAL23 ILE24 CYS25 ASP26 PRO27 SER28 VAL29 VAL30 LEU31 ALA32 LEU33 LYS34 SER35 LEU36 GLU37 LYS38 ASP39 TYR40 LEU41 PRO42 GLY43 HIS44 LEU45 ASP46 ALA47 LYS48 HIS49 HIS50 LYS51 ALA52 MET53 MET54 GLU55 ARG56 VAL57 GLU58 ASN59 ALA60 VAL61 LYS62 ASP63 PHE64 GLN65 GLU66 LEU67 ALA73 TYR74 MET75 GLY76 VAL77 VAL78 ASP79 GLU80 ALA81 THR82 LEU83 GLN84 LYS85 GLY86 SER87 TRP88 SER89 LEU90 LEU91 LYS92 ASP93 LEU94 LYS95 ARG96 ILE97 THR98 ASP99 SER100 ASP101 VAL102 LYS103 GLY104 ASP105 LEU106 PHE107 VAL108 LYS109 GLU110 LEU111 PHE112 TRP113 MET114 LEU115 HIS116 LEU117 GLN118 LYS119 GLU120 THR121 PHE122 ALA123 THR124 TYR125 VAL126 ALA127 ARG128 PHE129 GLN130 LYS131 GLU132 ALA133 TYR134 CYS135 PRO136 ASN137 LYS138 CYS139 GLY140 VAL141 MET142 LEU143 GLN144 THR145 LEU146 ILE147 TRP148 CYS149 LYS150 ASN151 CYS152 LYS153 LYS154 GLU155 VAL156 HIS157 ALA158 CYS159 ARG160 LYS161 SER162 TYR163 ASP164 CYS165 GLY166 GLU167 ARG168 ASN169 VAL170 GLU171 VAL172 PRO173 GLN174 MET175 GLU176 ASP177 MET178 ILE179 LEU180 ASP181 CYS182 GLU183 LEU184 ASN185 TRP186 HIS187 GLN188 ALA189 SER190 GLU191 GLY192 LEU193 THR194 ASP195 TYR196 SER197 PHE198 TYR199 ARG200 VAL201 TRP202 GLY203 ASN204 ASN205 THR206 GLU207 THR208 LEU209 VAL210 SER211 LYS212 GLY213 LYS214 GLU215 ALA216 THR217 LEU218 THR219 LYS220 PRO221 MET222 VAL223 GLY224 PRO225 GLU226 ASP227 ALA228 GLY229 SER230 TYR231 ARG232 CYS233 GLU234 LEU235 GLY236 SER237 VAL238 ASN239 SER240 SER241 PRO242 ALA243 THR244 ILE245 ILE246 ASN247 PHE248 HIS249 VAL250 THR251 VAL252 LEU253 PRO254
Unit 4 PRO18 TRP19 GLY20 ASP21 GLU22 LEU23 LEU24 ASN25 ILE26 CYS27 MET28 ASN29 ALA30 LYS31 HIS32 HIS33 LYS34 ARG35 VAL36 PRO37 SER38 PRO39 GLU40 ASP41 LYS42 LEU43 TYR44 GLU45 GLU46 CYS47 ILE48 PRO49 TRP50 LYS51 ASP52 ASN53 ALA54 CYS55 CYS56 THR57 LEU58 THR59 THR60 SER61 TRP62 GLU63 ALA64 HIS65 LEU66 ASP67 VAL68 SER69 PRO70 LEU71 TYR72 ASN73 PHE74 SER75 LEU76 PHE77 HIS78 CYS79 GLY80 LEU81 LEU82 MET83 PRO84 GLY85 CYS86 ARG87 LYS88 HIS89 PHE90 ILE91 GLN92 ALA93 ILE94 CYS95 PHE96 TYR97 GLU98 CYS99 SER100 PRO101 ASN102 LEU103 GLY104 PRO105 TRP106 ILE107 GLN108 PRO109 VAL110 GLY123 GLU124 ARG125 VAL126 VAL127 ASN128 VAL129 PRO130 LEU131 CYS132 GLN133 GLU134 ASP135 CYS136 GLU137 GLU138 TRP139 TRP140 GLU141 ASP142 CYS143 ARG144 MET145 SER146 TYR147 THR148 CYS149 LYS150 SER151 ASN152 TRP153 ARG154 GLY155 GLY156 TRP157 ASP158 TRP159 SER160 GLN161 GLY162 LYS163 ASN164 ARG165 CYS166 PRO167 LYS168 GLY169 ALA170 GLN171 CYS172 LEU173 PRO174 PHE175 SER176 HIS177 TYR178 PHE179 PRO180 THR181 PRO182 ALA183 ASP184 LEU185 CYS186 GLU187 LYS188 THR189 TRP190 SER191 ASN192 SER193 PHE194 LYS195 ALA196 SER197 PRO198 GLU199 ARG200 ARG201 ASN202 SER203 GLY204 ARG205 CYS206 LEU207 GLN208 LYS209 TRP210 PHE211 GLU212 PRO213 ALA214 GLN215 GLY216 ASN217 PRO218 ASN219 VAL220 ALA221 VAL222 ALA223 ARG224 LEU225 PHE226 ALA227 SER228 GLU229 PHE230 LEU231 GLU232

Ligands
Unit 5 NAG301 SO4302
Unit 6 NAG301 CL302
Unit 7 NAG300
Unit 8 NAG301 SO4302 CL303

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany