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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF XERH SITE-SPECIFIC RECOMBINASE BOUND TO SUBSTRATE: PRE-CLEAVAGE COMPLEX
Keywords XER, TYROSINE RECOMBINASE, SITE-SPECIFIC RECOMBINASE, CHROMO DIMER RESOLUTION, CELL CYCLE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JK0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TYROSINE RECOMBINASE XERH  A 347 2781 0
2  Protein   TYROSINE RECOMBINASE XERH  B 345 2755 0
3  Protein   TYROSINE RECOMBINASE XERH  C 348 2757 0
4  Protein   TYROSINE RECOMBINASE XERH  D 349 2722 0
5  Other macromolecule   DNA (30-MER)  E 30 610 0
6  Other macromolecule   DNA (30-MER)  F 30 616 0
7  Other macromolecule   DNA (30-MER)  G 30 610 0
8  Other macromolecule   DNA (30-MER)  H 29 598 0
9  Ligand   TYROSINE RECOMBINASE XERH  A 4 0 17
10  Ligand   TYROSINE RECOMBINASE XERH  B 5 0 29
11  Ligand   TYROSINE RECOMBINASE XERH  C 2 0 8
12  Ligand   TYROSINE RECOMBINASE XERH  D 1 0 4
13 Water     1136 0 1136
total       2656 13449 1194
Proteins
Unit 1 MET1 LYS2 HIS3 PRO4 LEU5 GLU6 GLU7 LEU8 LYS9 ASP10 PRO11 THR12 GLU13 ASN14 LEU15 LEU16 LEU17 TRP18 ILE19 GLY20 ARG21 PHE22 LEU23 ARG24 TYR25 LYS26 CYS27 THR28 SER29 LEU30 SER31 ASN32 SER33 GLN34 VAL35 LYS36 ASP37 GLN38 ASN39 LYS40 VAL41 PHE42 GLU43 CYS44 LEU45 ASN46 GLU47 LEU48 ASN49 GLN50 ALA51 CYS52 SER53 SER54 SER55 GLN56 LEU57 GLU58 LYS59 VAL60 CYS61 LYS62 LYS63 ALA64 ARG65 ASN66 ALA67 GLY68 LEU69 LEU70 GLY71 ILE72 ASN73 THR74 TYR75 ALA76 LEU77 PRO78 LEU79 LEU80 LYS81 PHE82 HIS83 GLU84 TYR85 PHE86 SER87 LYS88 ALA89 ARG90 LEU91 ILE92 ALA97 PHE98 ASN99 SER100 LEU101 LYS102 ASN103 ILE104 ASP105 GLU106 VAL107 MET108 LEU109 ALA110 GLU111 PHE112 LEU113 SER114 VAL115 TYR116 THR117 GLY118 GLY119 LEU120 SER121 LEU122 ALA123 THR124 LYS125 LYS126 ASN127 TYR128 ARG129 ILE130 ALA131 LEU132 LEU133 GLY134 LEU135 PHE136 SER137 TYR138 ILE139 ASP140 LYS141 GLN142 ASN143 GLN144 ASP145 GLU146 ASN147 GLU148 LYS149 SER150 TYR151 ILE152 TYR153 ASN154 ILE155 THR156 LEU157 LYS158 LYS170 LEU171 PRO172 THR173 HIS174 LEU175 ASN176 ASN177 GLU178 GLU179 LEU180 GLU181 LYS182 PHE183 LEU184 GLU185 SER186 ILE187 ASP188 LYS189 ILE190 GLU191 MET192 SER193 ALA194 LYS195 VAL196 ARG197 ALA198 ARG199 ASN200 ARG201 LEU202 LEU203 ILE204 LYS205 ILE206 ILE207 VAL208 PHE209 THR210 GLY211 MET212 ARG213 SER214 ASN215 GLU216 ALA217 LEU218 GLN219 LEU220 LYS221 ILE222 LYS223 ASP224 PHE225 THR226 LEU227 GLU228 ASN229 GLY230 CYS231 TYR232 THR233 ILE234 LEU235 ILE236 LYS237 GLY238 LYS239 GLY240 ASP241 LYS242 TYR243 ARG244 ALA245 VAL246 MET247 LEU248 LYS249 ALA250 PHE251 HIS252 ILE253 GLU254 SER255 LEU256 LEU257 LYS258 GLU259 TRP260 LEU261 ILE262 GLU263 ARG264 GLU265 LEU266 TYR267 PRO268 VAL269 LYS270 ASN271 ASP272 LEU273 LEU274 PHE275 CYS276 ASN277 GLN278 LYS279 GLY280 SER281 ALA282 LEU283 THR284 GLN285 ALA286 TYR287 LEU288 TYR289 LYS290 GLN291 VAL292 GLU293 ARG294 ILE295 ILE296 ASN297 PHE298 ALA299 GLY300 LEU301 ARG302 ARG303 GLU304 LYS305 ASN306 GLY307 ALA308 HIS309 MET310 LEU311 ARG312 HIS313 SER314 PHE315 ALA316 THR317 LEU318 LEU319 TYR320 GLN321 LYS322 ARG323 HIS324 ASP325 LEU326 ILE327 LEU328 VAL329 GLN330 GLU331 ALA332 LEU333 GLY334 HIS335 ALA336 SER337 LEU338 ASN339 THR340 SER341 ARG342 ILE343 TYR344 THR345 HIS346 PHE347 ASP348 LYS349 GLN350 ARG351 LEU352 GLU353 GLU354 ALA355 ALA356 SER357 ILE358 TRP359 GLU360 GLU361 ASN362
Unit 2 MET1 LYS2 HIS3 PRO4 LEU5 GLU6 GLU7 LEU8 LYS9 ASP10 PRO11 THR12 GLU13 ASN14 LEU15 LEU16 LEU17 TRP18 ILE19 GLY20 ARG21 PHE22 LEU23 ARG24 TYR25 LYS26 CYS27 THR28 SER29 LEU30 SER31 ASN32 SER33 GLN34 VAL35 LYS36 ASP37 GLN38 ASN39 LYS40 VAL41 PHE42 GLU43 CYS44 LEU45 ASN46 GLU47 LEU48 ASN49 GLN50 ALA51 CYS52 SER53 SER54 SER55 GLN56 LEU57 GLU58 LYS59 VAL60 CYS61 LYS62 LYS63 ALA64 ARG65 ASN66 ALA67 GLY68 LEU69 LEU70 GLY71 ILE72 ASN73 THR74 TYR75 ALA76 LEU77 PRO78 LEU79 LEU80 LYS81 PHE82 HIS83 GLU84 TYR85 PHE86 SER87 LYS88 ALA89 ARG90 LEU91 ILE92 THR93 PHE98 ASN99 SER100 LEU101 LYS102 ASN103 ILE104 ASP105 GLU106 VAL107 MET108 LEU109 ALA110 GLU111 PHE112 LEU113 SER114 VAL115 TYR116 THR117 GLY118 GLY119 LEU120 SER121 LEU122 ALA123 THR124 LYS125 LYS126 ASN127 TYR128 ARG129 ILE130 ALA131 LEU132 LEU133 GLY134 LEU135 PHE136 SER137 TYR138 ILE139 ASP140 LYS141 GLN142 ASN143 GLN144 ASP145 GLU146 ASN147 GLU148 LYS149 SER150 TYR151 ILE152 TYR153 ASN154 ILE155 THR156 LEU157 LYS158 LYS170 LEU171 PRO172 THR173 HIS174 LEU175 ASN176 ASN177 GLU178 GLU179 LEU180 GLU181 LYS182 PHE183 LEU184 GLU185 SER186 ILE187 ASP188 LYS189 ILE190 GLU191 MET192 SER193 ALA194 LYS195 VAL196 ARG197 ALA198 ARG199 ASN200 ARG201 LEU202 LEU203 ILE204 LYS205 ILE206 ILE207 VAL208 PHE209 THR210 GLY211 MET212 ARG213 SER214 ASN215 GLU216 ALA217 LEU218 GLN219 LEU220 LYS221 ILE222 LYS223 ASP224 PHE225 THR226 LEU227 GLU228 ASN229 GLY230 CYS231 TYR232 THR233 ILE234 LEU235 ILE236 LYS237 GLY238 LYS239 GLY240 ASP241 LYS242 TYR243 ARG244 ALA245 VAL246 MET247 LEU248 LYS249 ALA250 PHE251 HIS252 ILE253 GLU254 SER255 LEU256 LEU257 LYS258 GLU259 TRP260 LEU261 ILE262 GLU263 ARG264 GLU265 LEU266 TYR267 PRO268 VAL269 LYS270 ASN271 ASP272 LEU273 LEU274 PHE275 CYS276 ASN277 GLN278 LYS279 GLY280 SER281 ALA282 LEU283 THR284 GLN285 ALA286 TYR287 LEU288 TYR289 LYS290 GLN291 VAL292 GLU293 ARG294 ILE295 ILE296 ASN297 PHE298 ALA299 GLY300 LEU301 ARG302 ARG303 GLU304 LYS305 ASN306 GLY307 ALA308 HIS309 MET310 LEU311 ARG312 HIS313 SER314 PHE315 ALA316 THR317 LEU318 LEU319 TYR320 GLN321 LYS322 ARG323 HIS324 ASP325 LEU326 ILE327 LEU328 VAL329 GLN330 GLU331 ALA332 LEU333 GLY334 HIS335 ALA336 SER337 LEU338 ASN339 THR340 SER341 ARG342 ILE343 TYR344 THR345 HIS346 PHE347 ASP348 LYS349 GLN350 ARG351 LEU352 GLU353 GLU354 ALA355 ALA356 SER357 ILE358 TRP359 GLU360
Unit 3 MET1 LYS2 HIS3 PRO4 LEU5 GLU6 GLU7 LEU8 LYS9 ASP10 PRO11 THR12 GLU13 ASN14 LEU15 LEU16 LEU17 TRP18 ILE19 GLY20 ARG21 PHE22 LEU23 ARG24 TYR25 LYS26 CYS27 THR28 SER29 LEU30 SER31 ASN32 SER33 GLN34 VAL35 LYS36 ASP37 GLN38 ASN39 LYS40 VAL41 PHE42 GLU43 CYS44 LEU45 ASN46 GLU47 LEU48 ASN49 GLN50 ALA51 CYS52 SER53 SER54 SER55 GLN56 LEU57 GLU58 LYS59 VAL60 CYS61 LYS62 LYS63 ALA64 ARG65 ASN66 ALA67 GLY68 LEU69 LEU70 GLY71 ILE72 ASN73 THR74 TYR75 ALA76 LEU77 PRO78 LEU79 LEU80 LYS81 PHE82 HIS83 GLU84 TYR85 PHE86 SER87 LYS88 ALA89 ARG90 LEU91 ILE92 THR93 GLU94 ARG95 LEU96 ALA97 PHE98 ASN99 SER100 LEU101 LYS102 ASN103 ILE104 ASP105 GLU106 VAL107 MET108 LEU109 ALA110 GLU111 PHE112 LEU113 SER114 VAL115 TYR116 THR117 GLY118 GLY119 LEU120 SER121 LEU122 ALA123 THR124 LYS125 LYS126 ASN127 TYR128 ARG129 ILE130 ALA131 LEU132 LEU133 GLY134 LEU135 PHE136 SER137 TYR138 ILE139 ASP140 LYS141 GLN142 ASN143 GLN144 ASP145 GLU146 ASN147 GLU148 LYS149 SER150 TYR151 ILE152 TYR153 ASN154 ILE155 THR156 LEU157 LYS158 ASN159 ILE160 LYS170 LEU171 PRO172 THR173 HIS174 LEU175 ASN176 ASN177 GLU178 GLU179 LEU180 GLU181 LYS182 PHE183 LEU184 GLU185 SER186 ILE187 ASP188 LYS189 ILE190 GLU191 MET192 SER193 ALA194 LYS195 VAL196 ARG197 ALA198 ARG199 ASN200 ARG201 LEU202 LEU203 ILE204 LYS205 ILE206 ILE207 VAL208 PHE209 THR210 GLY211 MET212 ARG213 SER214 ASN215 GLU216 ALA217 LEU218 GLN219 LEU220 LYS221 ILE222 LYS223 ASP224 PHE225 THR226 LEU227 GLU228 ASN229 GLY230 CYS231 TYR232 THR233 ILE234 LEU235 ILE236 LYS237 GLY238 LYS239 GLY240 ASP241 LYS242 TYR243 ARG244 ALA245 VAL246 MET247 LEU248 LYS249 ALA250 PHE251 HIS252 ILE253 GLU254 SER255 LEU256 LEU257 LYS258 GLU259 TRP260 LEU261 ILE262 GLU263 ARG264 GLU265 LEU266 TYR267 PRO268 VAL269 LYS270 ASN271 ASP272 LEU273 LEU274 PHE275 CYS276 ASN277 GLN278 LYS279 GLY280 SER281 ALA282 LEU283 THR284 GLN285 ALA286 TYR287 LEU288 TYR289 LYS290 GLN291 VAL292 GLU293 ARG294 ILE295 ILE296 ASN297 PHE298 ALA299 GLY300 LEU301 ARG302 ARG303 GLU304 LYS305 ASN306 GLY307 ALA308 HIS309 MET310 LEU311 ARG312 HIS313 SER314 PHE315 ALA316 THR317 LEU318 LEU319 TYR320 GLN321 LYS322 ARG323 HIS324 ASP325 LEU326 ILE327 LEU328 VAL329 GLN330 GLU331 ALA332 LEU333 GLY334 HIS335 ALA336 SER337 LEU338 ASN339 THR340 SER341 ARG342 ILE343 TYR344 THR345 HIS346 PHE347 ARG351 LEU352 GLU353 GLU354 ALA355 ALA356 SER357 ILE358 TRP359 GLU360
Unit 4 MET1 LYS2 HIS3 PRO4 LEU5 GLU6 GLU7 LEU8 LYS9 ASP10 PRO11 THR12 GLU13 ASN14 LEU15 LEU16 LEU17 TRP18 ILE19 GLY20 ARG21 PHE22 LEU23 ARG24 TYR25 LYS26 CYS27 THR28 SER29 LEU30 SER31 ASN32 SER33 GLN34 VAL35 LYS36 ASP37 GLN38 ASN39 LYS40 VAL41 PHE42 GLU43 CYS44 LEU45 ASN46 GLU47 LEU48 ASN49 GLN50 ALA51 CYS52 SER53 SER54 SER55 GLN56 LEU57 GLU58 LYS59 VAL60 CYS61 LYS62 LYS63 ALA64 ARG65 ASN66 ALA67 GLY68 LEU69 LEU70 GLY71 ILE72 ASN73 THR74 TYR75 ALA76 LEU77 PRO78 LEU79 LEU80 LYS81 PHE82 HIS83 GLU84 TYR85 PHE86 SER87 LYS88 ALA89 ARG90 LEU91 ILE92 THR93 GLU94 ARG95 LEU96 ALA97 PHE98 ASN99 SER100 LEU101 LYS102 ASN103 ILE104 ASP105 GLU106 VAL107 MET108 LEU109 ALA110 GLU111 PHE112 LEU113 SER114 VAL115 TYR116 THR117 GLY118 GLY119 LEU120 SER121 LEU122 ALA123 THR124 LYS125 LYS126 ASN127 TYR128 ARG129 ILE130 ALA131 LEU132 LEU133 GLY134 LEU135 PHE136 SER137 TYR138 ILE139 ASP140 LYS141 GLN142 ASN143 GLN144 ASP145 GLU146 ASN147 GLU148 LYS149 SER150 TYR151 ILE152 TYR153 ASN154 ILE155 THR156 LEU157 LYS158 ASN159 ILE160 SER161 LYS170 LEU171 PRO172 THR173 HIS174 LEU175 ASN176 ASN177 GLU178 GLU179 LEU180 GLU181 LYS182 PHE183 LEU184 GLU185 SER186 ILE187 ASP188 LYS189 ILE190 GLU191 MET192 SER193 ALA194 LYS195 VAL196 ARG197 ALA198 ARG199 ASN200 ARG201 LEU202 LEU203 ILE204 LYS205 ILE206 ILE207 VAL208 PHE209 THR210 GLY211 MET212 ARG213 SER214 ASN215 GLU216 ALA217 LEU218 GLN219 LEU220 LYS221 ILE222 LYS223 ASP224 PHE225 THR226 LEU227 GLU228 ASN229 GLY230 CYS231 TYR232 THR233 ILE234 LEU235 ILE236 LYS237 GLY238 LYS239 GLY240 ASP241 LYS242 TYR243 ARG244 ALA245 VAL246 MET247 LEU248 LYS249 ALA250 PHE251 HIS252 ILE253 GLU254 SER255 LEU256 LEU257 LYS258 GLU259 TRP260 LEU261 ILE262 GLU263 ARG264 GLU265 LEU266 TYR267 PRO268 VAL269 LYS270 ASN271 ASP272 LEU273 LEU274 PHE275 CYS276 ASN277 GLN278 LYS279 GLY280 SER281 ALA282 LEU283 THR284 GLN285 ALA286 TYR287 LEU288 TYR289 LYS290 GLN291 VAL292 GLU293 ARG294 ILE295 ILE296 ASN297 PHE298 ALA299 GLY300 LEU301 ARG302 ARG303 GLU304 LYS305 ASN306 GLY307 ALA308 HIS309 MET310 LEU311 ARG312 HIS313 SER314 PHE315 ALA316 THR317 LEU318 LEU319 TYR320 GLN321 LYS322 ARG323 HIS324 ASP325 LEU326 ILE327 LEU328 VAL329 GLN330 GLU331 ALA332 LEU333 GLY334 HIS335 ALA336 SER337 LEU338 ASN339 THR340 SER341 ARG342 ILE343 TYR344 THR345 HIS346 ARG351 LEU352 GLU353 GLU354 ALA355 ALA356 SER357 ILE358 TRP359 GLU360 GLU361
Other macromolecules
Unit 5 DG1 DA2 DG3 DT4 DT5 DA6 DT7 DG8 DA9 DA10 DA11 DA12 DC13 DT14 DG15 DC16 DA17 DC18 DT19 DT20 DT21 DT22 DC23 DA24 DA25 DA26 DC27 DT28 DT29 DT30
Unit 6 DA1 DA2 DA3 DG4 DT5 DT6 DT7 DG8 DA9 DA10 DA11 DA12 DG13 DT14 DG15 DC16 DA17 DG18 DT19 DT20 DT21 DT22 DC23 DA24 DT25 DA26 DA27 DC28 DT29 DA30
Unit 7 DG1 DA2 DG3 DT4 DT5 DA6 DT7 DG8 DA9 DA10 DA11 DA12 DC13 DT14 DG15 DC16 DA17 DC18 DT19 DT20 DT21 DT22 DC23 DA24 DA25 DA26 DC27 DT28 DT29 DT30
Unit 8 DA2 DA3 DG4 DT5 DT6 DT7 DG8 DA9 DA10 DA11 DA12 DG13 DT14 DG15 DC16 DA17 DG18 DT19 DT20 DT21 DT22 DC23 DA24 DT25 DA26 DA27 DC28 DT29 DA30
Ligands
Unit 9 GOL401 GOL402 EDO403 CL404
Unit 10 GOL401 GOL402 GOL403 EDO404 PEG405
Unit 11 EDO401 EDO402
Unit 12 EDO401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany