5JJV - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF XERH SITE-SPECIFIC RECOMBINASE BOUND TO PALINDROMIC DIFH SUBSTRATE: POST-CLEAVAGE COMPLEX
• Keywords: XER, TYROSINE RECOMBINASE, SITE-SPECIFIC RECOMBINASE, CHROMO DIMER RESOLUTION, CELL CYCLE, RECOMBINATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5JJV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TYROSINE RECOMBINASE XERH	A	353	2787	0
2	Protein	TYROSINE RECOMBINASE XERH	B	356	2787	0
3	Other macromolecule		C	13	250	0
4	Other macromolecule	DNA (5'- D(*TP*GP*CP*AP*GP*TP*TP*TP*TP*CP*AP*TP*AP*AP*CP*TP*A)-3')	D	17	343	0
5	Other macromolecule		E	13	266	0
6	Other macromolecule	DNA (5'- D(*TP*GP*CP*AP*GP*TP*TP*TP*TP*CP*AP*TP*AP*AP*CP*TP*A)-3')	F	17	343	0
7	Ligand	TYROSINE RECOMBINASE XERH	A	6	0	31
8	Ligand	TYROSINE RECOMBINASE XERH	B	4	0	24
9	Water			153	0	153
total				932	6776	208

Proteins

Unit 1

MET 1 LYS 2 HIS 3 PRO 4 LEU 5 GLU 6 GLU 7 LEU 8 LYS 9 ASP 10 PRO 11 THR 12 GLU 13 ASN 14 LEU 15 LEU 16 LEU 17 TRP 18 ILE 19 GLY 20 ARG 21 PHE 22 LEU 23 ARG 24 TYR 25 LYS 26 CYS 27 THR 28 SER 29 LEU 30 SER 31 ASN 32 SER 33 GLN 34 VAL 35 LYS 36 ASP 37 GLN 38 ASN 39 LYS 40 VAL 41 PHE 42 GLU 43 CYS 44 LEU 45 ASN 46 GLU 47 LEU 48 ASN 49 GLN 50 ALA 51 CYS 52 SER 53 SER 54 SER 55 GLN 56 LEU 57 GLU 58 LYS 59 VAL 60 CYS 61 LYS 62 LYS 63 ALA 64 ARG 65 ASN 66 ALA 67 GLY 68 LEU 69 LEU 70 GLY 71 ILE 72 ASN 73 THR 74 TYR 75 ALA 76 LEU 77 PRO 78 LEU 79 LEU 80 LYS 81 PHE 82 HIS 83 GLU 84 TYR 85 PHE 86 SER 87 LYS 88 ALA 89 PHE 98 ASN 99 SER 100 LEU 101 LYS 102 ASN 103 ILE 104 ASP 105 GLU 106 VAL 107 MET 108 LEU 109 ALA 110 GLU 111 PHE 112 LEU 113 SER 114 VAL 115 TYR 116 THR 117 GLY 118 GLY 119 LEU 120 SER 121 LEU 122 ALA 123 THR 124 LYS 125 LYS 126 ASN 127 TYR 128 ARG 129 ILE 130 ALA 131 LEU 132 LEU 133 GLY 134 LEU 135 PHE 136 SER 137 TYR 138 ILE 139 ASP 140 LYS 141 GLN 142 ASN 143 GLN 144 ASP 145 GLU 146 ASN 147 GLU 148 LYS 149 SER 150 TYR 151 ILE 152 TYR 153 ASN 154 ILE 155 THR 156 LEU 157 LYS 158 ASN 159 ILE 160 SER 161 GLY 162 VAL 163 ASN 164 GLN 165 SER 166 ALA 167 GLY 168 ASN 169 LYS 170 LEU 171 PRO 172 THR 173 HIS 174 LEU 175 ASN 176 ASN 177 GLU 178 GLU 179 LEU 180 GLU 181 LYS 182 PHE 183 LEU 184 GLU 185 SER 186 ILE 187 ASP 188 LYS 189 ILE 190 GLU 191 MET 192 SER 193 ALA 194 LYS 195 VAL 196 ARG 197 ALA 198 ARG 199 ASN 200 ARG 201 LEU 202 LEU 203 ILE 204 LYS 205 ILE 206 ILE 207 VAL 208 PHE 209 THR 210 GLY 211 MET 212 ARG 213 SER 214 ASN 215 GLU 216 ALA 217 LEU 218 GLN 219 LEU 220 LYS 221 ILE 222 LYS 223 ASP 224 PHE 225 THR 226 LEU 227 GLU 228 ASN 229 GLY 230 CYS 231 TYR 232 THR 233 ILE 234 LEU 235 ILE 236 LYS 237 GLY 238 LYS 239 GLY 240 ASP 241 LYS 242 TYR 243 ARG 244 ALA 245 VAL 246 MET 247 LEU 248 LYS 249 ALA 250 PHE 251 HIS 252 ILE 253 GLU 254 SER 255 LEU 256 LEU 257 LYS 258 GLU 259 TRP 260 LEU 261 ILE 262 GLU 263 ARG 264 GLU 265 LEU 266 TYR 267 PRO 268 VAL 269 LYS 270 ASN 271 ASP 272 LEU 273 LEU 274 PHE 275 CYS 276 ASN 277 GLN 278 LYS 279 GLY 280 SER 281 ALA 282 LEU 283 THR 284 GLN 285 ALA 286 TYR 287 LEU 288 TYR 289 LYS 290 GLN 291 VAL 292 GLU 293 ARG 294 ILE 295 ILE 296 ASN 297 PHE 298 ALA 299 GLY 300 LEU 301 ARG 302 ARG 303 GLU 304 LYS 305 ASN 306 GLY 307 ALA 308 HIS 309 MET 310 LEU 311 ARG 312 HIS 313 SER 314 PHE 315 ALA 316 THR 317 LEU 318 LEU 319 TYR 320 GLN 321 LYS 322 ARG 323 HIS 324 ASP 325 LEU 326 ILE 327 LEU 328 VAL 329 GLN 330 GLU 331 ALA 332 LEU 333 GLY 334 HIS 335 ALA 336 SER 337 LEU 338 ASN 339 THR 340 SER 341 ARG 342 ILE 343 TYR 344 THR 345 HIS 346 PHE 347 ASP 348 LYS 349 GLN 350 ARG 351 LEU 352 GLU 353 GLU 354 ALA 355 ALA 356 SER 357 ILE 358 TRP 359 GLU 360 GLU 361

Unit 2

SER 0 MET 1 LYS 2 HIS 3 PRO 4 LEU 5 GLU 6 GLU 7 LEU 8 LYS 9 ASP 10 PRO 11 THR 12 GLU 13 ASN 14 LEU 15 LEU 16 LEU 17 TRP 18 ILE 19 GLY 20 ARG 21 PHE 22 LEU 23 ARG 24 TYR 25 LYS 26 CYS 27 THR 28 SER 29 LEU 30 SER 31 ASN 32 SER 33 GLN 34 VAL 35 LYS 36 ASP 37 GLN 38 ASN 39 LYS 40 VAL 41 PHE 42 GLU 43 CYS 44 LEU 45 ASN 46 GLU 47 LEU 48 ASN 49 GLN 50 ALA 51 CYS 52 SER 53 SER 54 SER 55 GLN 56 LEU 57 GLU 58 LYS 59 VAL 60 CYS 61 LYS 62 LYS 63 ALA 64 ARG 65 ASN 66 ALA 67 GLY 68 LEU 69 LEU 70 GLY 71 ILE 72 ASN 73 THR 74 TYR 75 ALA 76 LEU 77 PRO 78 LEU 79 LEU 80 LYS 81 PHE 82 HIS 83 GLU 84 TYR 85 PHE 86 SER 87 LYS 88 ALA 89 ARG 90 LEU 91 ILE 92 THR 93 GLU 94 ARG 95 LEU 96 ALA 97 PHE 98 ASN 99 SER 100 LEU 101 LYS 102 ASN 103 ILE 104 ASP 105 GLU 106 VAL 107 MET 108 LEU 109 ALA 110 GLU 111 PHE 112 LEU 113 SER 114 VAL 115 TYR 116 THR 117 GLY 118 GLY 119 LEU 120 SER 121 LEU 122 ALA 123 THR 124 LYS 125 LYS 126 ASN 127 TYR 128 ARG 129 ILE 130 ALA 131 LEU 132 LEU 133 GLY 134 LEU 135 PHE 136 SER 137 TYR 138 ILE 139 ASP 140 LYS 141 GLN 142 ASN 143 GLN 144 ASP 145 GLU 146 ASN 147 GLU 148 LYS 149 SER 150 TYR 151 ILE 152 TYR 153 ASN 154 ILE 155 THR 156 LEU 157 LYS 158 ASN 159 ILE 160 SER 161 GLY 168 ASN 169 LYS 170 LEU 171 PRO 172 THR 173 HIS 174 LEU 175 ASN 176 ASN 177 GLU 178 GLU 179 LEU 180 GLU 181 LYS 182 PHE 183 LEU 184 GLU 185 SER 186 ILE 187 ASP 188 LYS 189 ILE 190 GLU 191 MET 192 SER 193 ALA 194 LYS 195 VAL 196 ARG 197 ALA 198 ARG 199 ASN 200 ARG 201 LEU 202 LEU 203 ILE 204 LYS 205 ILE 206 ILE 207 VAL 208 PHE 209 THR 210 GLY 211 MET 212 ARG 213 SER 214 ASN 215 GLU 216 ALA 217 LEU 218 GLN 219 LEU 220 LYS 221 ILE 222 LYS 223 ASP 224 PHE 225 THR 226 LEU 227 GLU 228 ASN 229 GLY 230 CYS 231 TYR 232 THR 233 ILE 234 LEU 235 ILE 236 LYS 237 GLY 238 LYS 239 GLY 240 ASP 241 LYS 242 TYR 243 ARG 244 ALA 245 VAL 246 MET 247 LEU 248 LYS 249 ALA 250 PHE 251 HIS 252 ILE 253 GLU 254 SER 255 LEU 256 LEU 257 LYS 258 GLU 259 TRP 260 LEU 261 ILE 262 GLU 263 ARG 264 GLU 265 LEU 266 TYR 267 PRO 268 VAL 269 LYS 270 ASN 271 ASP 272 LEU 273 LEU 274 PHE 275 CYS 276 ASN 277 GLN 278 LYS 279 GLY 280 SER 281 ALA 282 LEU 283 THR 284 GLN 285 ALA 286 TYR 287 LEU 288 TYR 289 LYS 290 GLN 291 VAL 292 GLU 293 ARG 294 ILE 295 ILE 296 ASN 297 PHE 298 ALA 299 GLY 300 LEU 301 ARG 302 ARG 303 GLU 304 LYS 305 ASN 306 GLY 307 ALA 308 HIS 309 MET 310 LEU 311 ARG 312 HIS 313 SER 314 PHE 315 ALA 316 THR 317 LEU 318 LEU 319 TYR 320 GLN 321 LYS 322 ARG 323 HIS 324 ASP 325 LEU 326 ILE 327 LEU 328 VAL 329 GLN 330 GLU 331 ALA 332 LEU 333 GLY 334 HIS 335 ALA 336 SER 337 LEU 338 ASN 339 THR 340 SER 341 ARG 342 ILE 343 TYR 344 THR 345 HIS 346 PHE 347 ASP 348 LYS 349 GLN 350 ARG 351 LEU 352 GLU 353 GLU 354 ALA 355 ALA 356 SER 357 ILE 358 TRP 359 GLU 360 GLU 361

Other macromolecules

Unit 3	DT 1 DA 2 DG 3 DT 4 DT 5 DA 6 DT 7 DG 8 DA 9 DA 10 DA 11 DA 12 DC 13
Unit 4	DT 14 DG 15 DC 16 DA 17 DG 18 DT 19 DT 20 DT 21 DT 22 DC 23 DA 24 DT 25 DA 26 DA 27 DC 28 DT 29 DA 30
Unit 5	DT 1 DA 2 DG 3 DT 4 DT 5 DA 6 DT 7 DG 8 DA 9 DA 10 DA 11 DA 12 DC 13
Unit 6	DT 14 DG 15 DC 16 DA 17 DG 18 DT 19 DT 20 DT 21 DT 22 DC 23 DA 24 DT 25 DA 26 DA 27 DC 28 DT 29 DA 30

Ligands

Unit 7	GOL 401 GOL 402 GOL 403 GOL 404 GOL 405 CL 406
Unit 8	GOL 401 GOL 402 GOL 403 GOL 404