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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RV2837C COMPLEXED WITH 5'-PAPA AND 5'-A
Keywords EXONUCLEASE, DHH-DHHA1, C-DI-AMP HYDROLASE, HYDROLASE-RNA CO
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5JJU     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED PROTEIN RV2837C  A 325 2398 0
2  Protein   UNCHARACTERIZED PROTEIN RV2837C  B 325 2398 0
3  RNA    C 2 44 0
4  Ligand   UNCHARACTERIZED PROTEIN RV2837C  A 2 0 2
5  Ligand   UNCHARACTERIZED PROTEIN RV2837C  B 4 0 48
6 Water     166 0 166
total       824 4840 216

Proteins
Unit 1 GLY18 ALA19 ARG20 VAL21 ASP22 ALA23 VAL24 GLY25 ALA26 ALA27 ALA28 LEU29 LEU30 SER31 ALA32 ALA33 ALA34 ARG35 VAL36 GLY37 VAL38 VAL39 CYS40 HIS41 VAL42 HIS43 PRO44 ASP45 ALA46 ASP47 THR48 ILE49 GLY50 ALA51 GLY52 LEU53 ALA54 LEU55 ALA56 LEU57 VAL58 LEU59 ASP60 GLY61 CYS62 GLY63 LYS64 ARG65 VAL66 GLU67 VAL68 SER69 PHE70 ALA71 ALA72 PRO73 ALA74 THR75 LEU76 PRO77 GLU78 SER79 LEU80 ARG81 SER82 LEU83 PRO84 GLY85 CYS86 HIS87 LEU88 LEU89 VAL90 ARG91 PRO92 GLU93 VAL94 MET95 ARG96 ARG97 ASP98 VAL99 ASP100 LEU101 VAL102 VAL103 THR104 VAL105 ASP106 ILE107 PRO108 SER109 VAL110 ASP111 ARG112 LEU113 GLY114 ALA115 LEU116 GLY117 ASP118 LEU119 THR120 ASP121 SER122 GLY123 ARG124 GLU125 LEU126 LEU127 VAL128 ILE129 ASP130 HIS131 HIS132 ALA133 SER134 ASN135 ASP136 LEU137 PHE138 GLY139 THR140 ALA141 ASN142 PHE143 ILE144 ASP145 PRO146 SER147 ALA148 ASP149 SER150 THR151 THR152 THR153 MET154 VAL155 ALA156 GLU157 ILE158 LEU159 ASP160 ALA161 TRP162 GLY163 LYS164 PRO165 ILE166 ASP167 PRO168 ARG169 VAL170 ALA171 HIS172 CYS173 ILE174 TYR175 ALA176 GLY177 LEU178 ALA179 THR180 ASP181 THR182 GLY183 SER184 PHE185 ARG186 TRP187 ALA188 SER189 VAL190 ARG191 GLY192 TYR193 ARG194 LEU195 ALA196 ALA197 ARG198 LEU199 VAL200 GLU201 ILE202 GLY203 VAL204 ASP205 ASN206 ALA207 THR208 VAL209 SER210 ARG211 THR212 LEU213 MET214 ASP215 SER216 HIS217 PRO218 PHE219 THR220 TRP221 LEU222 PRO223 LEU224 LEU225 SER226 ARG227 VAL228 LEU229 GLY230 SER231 ALA232 GLN233 LEU234 VAL235 SER236 GLU237 ALA238 VAL239 GLY240 GLY241 ARG242 GLY243 LEU244 VAL245 TYR246 VAL247 VAL248 VAL249 ASP250 ASN251 ARG252 GLU253 TRP254 VAL255 ALA256 ALA257 ARG258 SER259 GLU260 GLU261 VAL262 GLU263 SER264 ILE265 VAL266 ASP267 ILE268 VAL269 ARG270 THR271 THR272 GLN273 GLN274 ALA275 GLU276 VAL277 ALA278 ALA279 VAL280 PHE281 LYS282 GLU283 VAL284 GLU285 PRO286 HIS287 ARG288 TRP289 SER290 VAL291 SER292 MET293 ARG294 ALA295 LYS296 THR297 VAL298 ASN299 LEU300 ALA301 ALA302 VAL303 ALA304 SER305 GLY306 PHE307 GLY308 GLY309 GLY310 GLY311 HIS312 ARG313 LEU314 ALA315 ALA316 GLY317 TYR318 THR319 THR320 THR321 GLY322 SER323 ILE324 ASP325 ASP326 ALA327 VAL328 ALA329 SER330 LEU331 ARG332 ALA333 ALA334 LEU335 GLY336 LEU337 THR338 ARG339 ALA340 PRO341 PRO342
Unit 2 GLY18 ALA19 ARG20 VAL21 ASP22 ALA23 VAL24 GLY25 ALA26 ALA27 ALA28 LEU29 LEU30 SER31 ALA32 ALA33 ALA34 ARG35 VAL36 GLY37 VAL38 VAL39 CYS40 HIS41 VAL42 HIS43 PRO44 ASP45 ALA46 ASP47 THR48 ILE49 GLY50 ALA51 GLY52 LEU53 ALA54 LEU55 ALA56 LEU57 VAL58 LEU59 ASP60 GLY61 CYS62 GLY63 LYS64 ARG65 VAL66 GLU67 VAL68 SER69 PHE70 ALA71 ALA72 PRO73 ALA74 THR75 LEU76 PRO77 GLU78 SER79 LEU80 ARG81 SER82 LEU83 PRO84 GLY85 CYS86 HIS87 LEU88 LEU89 VAL90 ARG91 PRO92 GLU93 VAL94 MET95 ARG96 ARG97 ASP98 VAL99 ASP100 LEU101 VAL102 VAL103 THR104 VAL105 ASP106 ILE107 PRO108 SER109 VAL110 ASP111 ARG112 LEU113 GLY114 ALA115 LEU116 GLY117 ASP118 LEU119 THR120 ASP121 SER122 GLY123 ARG124 GLU125 LEU126 LEU127 VAL128 ILE129 ASP130 HIS131 HIS132 ALA133 SER134 ASN135 ASP136 LEU137 PHE138 GLY139 THR140 ALA141 ASN142 PHE143 ILE144 ASP145 PRO146 SER147 ALA148 ASP149 SER150 THR151 THR152 THR153 MET154 VAL155 ALA156 GLU157 ILE158 LEU159 ASP160 ALA161 TRP162 GLY163 LYS164 PRO165 ILE166 ASP167 PRO168 ARG169 VAL170 ALA171 HIS172 CYS173 ILE174 TYR175 ALA176 GLY177 LEU178 ALA179 THR180 ASP181 THR182 GLY183 SER184 PHE185 ARG186 TRP187 ALA188 SER189 VAL190 ARG191 GLY192 TYR193 ARG194 LEU195 ALA196 ALA197 ARG198 LEU199 VAL200 GLU201 ILE202 GLY203 VAL204 ASP205 ASN206 ALA207 THR208 VAL209 SER210 ARG211 THR212 LEU213 MET214 ASP215 SER216 HIS217 PRO218 PHE219 THR220 TRP221 LEU222 PRO223 LEU224 LEU225 SER226 ARG227 VAL228 LEU229 GLY230 SER231 ALA232 GLN233 LEU234 VAL235 SER236 GLU237 ALA238 VAL239 GLY240 GLY241 ARG242 GLY243 LEU244 VAL245 TYR246 VAL247 VAL248 VAL249 ASP250 ASN251 ARG252 GLU253 TRP254 VAL255 ALA256 ALA257 ARG258 SER259 GLU260 GLU261 VAL262 GLU263 SER264 ILE265 VAL266 ASP267 ILE268 VAL269 ARG270 THR271 THR272 GLN273 GLN274 ALA275 GLU276 VAL277 ALA278 ALA279 VAL280 PHE281 LYS282 GLU283 VAL284 GLU285 PRO286 HIS287 ARG288 TRP289 SER290 VAL291 SER292 MET293 ARG294 ALA295 LYS296 THR297 VAL298 ASN299 LEU300 ALA301 ALA302 VAL303 ALA304 SER305 GLY306 PHE307 GLY308 GLY309 GLY310 GLY311 HIS312 ARG313 LEU314 ALA315 ALA316 GLY317 TYR318 THR319 THR320 THR321 GLY322 SER323 ILE324 ASP325 ASP326 ALA327 VAL328 ALA329 SER330 LEU331 ARG332 ALA333 ALA334 LEU335 GLY336 LEU337 THR338 ARG339 ALA340 PRO341 PRO342

Nucleic acids
Unit 3 A1003 A1004

Ligands
Unit 4 MN1001 MN1002
Unit 5 MN1001 MN1002 AMP1003 AMP1004

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany