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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A VARIANT HUMAN ACTIVATION-INDUCED DEOX DEAMINASE AS AN MBP FUSION PROTEIN
Keywords AID MBP-FUISON DEAMINASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JJ4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  C 541 4210 0
2  Protein   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  A 542 4187 0
3  Protein   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  B 545 4149 0
4  Ligand    D 4 0 45
5  Ligand    E 4 0 45
6  Ligand    F 4 0 45
7  Ligand   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  C 2 0 2
8  Ligand   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  A 2 0 2
9  Ligand   MALTOSE-BINDING PERIPLASMIC PROTEIN,SINGLE-STRAND CYTOSINE DEAMINASE  B 2 0 2
10 Water     36 0 36
total       1682 12546 177
Proteins
Unit 1 LYS1 ILE2 GLU3 GLU4 GLY5 LYS6 LEU7 VAL8 ILE9 TRP10 ILE11 ASN12 GLY13 ASP14 LYS15 GLY16 TYR17 ASN18 GLY19 LEU20 ALA21 GLU22 VAL23 GLY24 LYS25 LYS26 PHE27 GLU28 LYS29 ASP30 THR31 GLY32 ILE33 LYS34 VAL35 THR36 VAL37 GLU38 HIS39 PRO40 ASP41 LYS42 LEU43 GLU44 GLU45 LYS46 PHE47 PRO48 GLN49 VAL50 ALA51 ALA52 THR53 GLY54 ASP55 GLY56 PRO57 ASP58 ILE59 ILE60 PHE61 TRP62 ALA63 HIS64 ASP65 ARG66 PHE67 GLY68 GLY69 TYR70 ALA71 GLN72 SER73 GLY74 LEU75 LEU76 ALA77 GLU78 ILE79 THR80 PRO81 ASP82 LYS83 ALA84 PHE85 GLN86 ASP87 LYS88 LEU89 TYR90 PRO91 PHE92 THR93 TRP94 ASP95 ALA96 VAL97 ARG98 TYR99 ASN100 GLY101 LYS102 LEU103 ILE104 ALA105 TYR106 PRO107 ILE108 ALA109 VAL110 GLU111 ALA112 LEU113 SER114 LEU115 ILE116 TYR117 ASN118 LYS119 ASP120 LEU121 LEU122 PRO123 ASN124 PRO125 PRO126 LYS127 THR128 TRP129 GLU130 GLU131 ILE132 PRO133 ALA134 LEU135 ASP136 LYS137 GLU138 LEU139 LYS140 ALA141 LYS142 GLY143 LYS144 SER145 ALA146 LEU147 MET148 PHE149 ASN150 LEU151 GLN152 GLU153 PRO154 TYR155 PHE156 THR157 TRP158 PRO159 LEU160 ILE161 ALA162 ALA163 ASP164 GLY165 GLY166 TYR167 ALA168 PHE169 LYS170 TYR171 GLU172 ASN173 GLY174 LYS175 TYR176 ASP177 ILE178 LYS179 ASP180 VAL181 GLY182 VAL183 ASP184 ASN185 ALA186 GLY187 ALA188 LYS189 ALA190 GLY191 LEU192 THR193 PHE194 LEU195 VAL196 ASP197 LEU198 ILE199 LYS200 ASN201 LYS202 HIS203 MET204 ASN205 ALA206 ASP207 THR208 ASP209 TYR210 SER211 ILE212 ALA213 GLU214 ALA215 ALA216 PHE217 ASN218 LYS219 GLY220 GLU221 THR222 ALA223 MET224 THR225 ILE226 ASN227 GLY228 PRO229 TRP230 ALA231 TRP232 SER233 ASN234 ILE235 ASP236 THR237 SER238 LYS239 VAL240 ASN241 TYR242 GLY243 VAL244 THR245 VAL246 LEU247 PRO248 THR249 PHE250 LYS251 GLY252 GLN253 PRO254 SER255 LYS256 PRO257 PHE258 VAL259 GLY260 VAL261 LEU262 SER263 ALA264 GLY265 ILE266 ASN267 ALA268 ALA269 SER270 PRO271 ASN272 LYS273 GLU274 LEU275 ALA276 LYS277 GLU278 PHE279 LEU280 GLU281 ASN282 TYR283 LEU284 LEU285 THR286 ASP287 GLU288 GLY289 LEU290 GLU291 ALA292 VAL293 ASN294 LYS295 ASP296 LYS297 PRO298 LEU299 GLY300 ALA301 VAL302 ALA303 LEU304 LYS305 SER306 TYR307 GLU308 GLU309 GLU310 LEU311 ALA312 LYS313 ASP314 PRO315 ARG316 ILE317 ALA318 ALA319 THR320 MET321 GLU322 ASN323 ALA324 GLN325 LYS326 GLY327 GLU328 ILE329 MET330 PRO331 ASN332 ILE333 PRO334 GLN335 MET336 SER337 ALA338 PHE339 TRP340 TYR341 ALA342 VAL343 ARG344 THR345 ALA346 VAL347 ILE348 ASN349 ALA350 ALA351 SER352 GLY353 ARG354 GLN355 THR356 VAL357 ASP358 ALA359 ALA360 LEU361 ALA362 ALA363 ALA364 GLN365 THR366 ASN367 ALA368 ALA369 ALA370 LEU1005 MET1006 ASP1007 PRO1008 HIS1009 ILE1010 PHE1011 THR1012 SER1013 ASN1014 PHE1015 ASN1016 ASN1017 GLY1018 ILE1019 GLY1023 ARG1024 HIS1025 LYS1026 THR1027 TYR1028 LEU1029 CYS1030 TYR1031 GLU1032 VAL1033 GLU1034 ARG1035 LEU1036 ASP1037 SER1041 PHE1042 SER1043 LEU1044 ASP1045 PHE1046 GLY1047 TYR1048 LEU1049 ARG1050 ASN1051 LYS1052 ASN1053 GLY1054 CYS1055 HIS1056 VAL1057 GLU1058 LEU1059 LEU1060 PHE1061 LEU1062 ARG1063 TYR1064 ILE1065 SER1066 ASP1067 TRP1068 ASP1069 LEU1070 ASP1071 PRO1072 GLY1073 ARG1074 CYS1075 TYR1076 ARG1077 VAL1078 THR1079 TRP1080 PHE1081 THR1082 SER1083 TRP1084 SER1085 PRO1086 CYS1087 TYR1088 ASP1089 CYS1090 ALA1091 ARG1092 HIS1093 VAL1094 ALA1095 ASP1096 PHE1097 LEU1098 ARG1099 GLY1100 ASN1101 PRO1102 ASN1103 LEU1104 SER1105 LEU1106 ARG1107 ILE1108 PHE1109 THR1110 ALA1111 ARG1112 LEU1113 TYR1114 PHE1115 CYS1116 GLU1117 ASP1118 ARG1119 LYS1120 ALA1121 GLU1122 PRO1123 GLU1124 GLY1125 LEU1126 ARG1127 ARG1128 LEU1129 HIS1130 ARG1131 ALA1132 GLY1133 VAL1134 GLN1135 ILE1136 ALA1137 ILE1138 MET1139 THR1140 PHE1141 LYS1142 ASP1143 TYR1144 PHE1145 TYR1146 CYS1147 TRP1148 ASN1149 THR1150 PHE1151 VAL1152 GLU1153 ASN1154 HIS1155 GLU1156 ARG1157 THR1158 PHE1159 LYS1160 ALA1161 TRP1162 GLU1163 GLY1164 LEU1165 HIS1166 GLU1167 ASN1168 SER1169 VAL1170 ARG1171 LEU1172 SER1173 ARG1174 GLN1175 LEU1176 ARG1177 ARG1178 ILE1179 LEU1180 LEU1181
Unit 2 LYS1 ILE2 GLU3 GLU4 GLY5 LYS6 LEU7 VAL8 ILE9 TRP10 ILE11 ASN12 GLY13 ASP14 LYS15 GLY16 TYR17 ASN18 GLY19 LEU20 ALA21 GLU22 VAL23 GLY24 LYS25 LYS26 PHE27 GLU28 LYS29 ASP30 THR31 GLY32 ILE33 LYS34 VAL35 THR36 VAL37 GLU38 HIS39 PRO40 ASP41 LYS42 LEU43 GLU44 GLU45 LYS46 PHE47 PRO48 GLN49 VAL50 ALA51 ALA52 THR53 GLY54 ASP55 GLY56 PRO57 ASP58 ILE59 ILE60 PHE61 TRP62 ALA63 HIS64 ASP65 ARG66 PHE67 GLY68 GLY69 TYR70 ALA71 GLN72 SER73 GLY74 LEU75 LEU76 ALA77 GLU78 ILE79 THR80 PRO81 ASP82 LYS83 ALA84 PHE85 GLN86 ASP87 LYS88 LEU89 TYR90 PRO91 PHE92 THR93 TRP94 ASP95 ALA96 VAL97 ARG98 TYR99 ASN100 GLY101 LYS102 LEU103 ILE104 ALA105 TYR106 PRO107 ILE108 ALA109 VAL110 GLU111 ALA112 LEU113 SER114 LEU115 ILE116 TYR117 ASN118 LYS119 ASP120 LEU121 LEU122 PRO123 ASN124 PRO125 PRO126 LYS127 THR128 TRP129 GLU130 GLU131 ILE132 PRO133 ALA134 LEU135 ASP136 LYS137 GLU138 LEU139 LYS140 ALA141 LYS142 GLY143 LYS144 SER145 ALA146 LEU147 MET148 PHE149 ASN150 LEU151 GLN152 GLU153 PRO154 TYR155 PHE156 THR157 TRP158 PRO159 LEU160 ILE161 ALA162 ALA163 ASP164 GLY165 GLY166 TYR167 ALA168 PHE169 LYS170 TYR171 GLU172 ASN173 GLY174 LYS175 TYR176 ASP177 ILE178 LYS179 ASP180 VAL181 GLY182 VAL183 ASP184 ASN185 ALA186 GLY187 ALA188 LYS189 ALA190 GLY191 LEU192 THR193 PHE194 LEU195 VAL196 ASP197 LEU198 ILE199 LYS200 ASN201 LYS202 HIS203 MET204 ASN205 ALA206 ASP207 THR208 ASP209 TYR210 SER211 ILE212 ALA213 GLU214 ALA215 ALA216 PHE217 ASN218 LYS219 GLY220 GLU221 THR222 ALA223 MET224 THR225 ILE226 ASN227 GLY228 PRO229 TRP230 ALA231 TRP232 SER233 ASN234 ILE235 ASP236 THR237 SER238 LYS239 VAL240 ASN241 TYR242 GLY243 VAL244 THR245 VAL246 LEU247 PRO248 THR249 PHE250 LYS251 GLY252 GLN253 PRO254 SER255 LYS256 PRO257 PHE258 VAL259 GLY260 VAL261 LEU262 SER263 ALA264 GLY265 ILE266 ASN267 ALA268 ALA269 SER270 PRO271 ASN272 LYS273 GLU274 LEU275 ALA276 LYS277 GLU278 PHE279 LEU280 GLU281 ASN282 TYR283 LEU284 LEU285 THR286 ASP287 GLU288 GLY289 LEU290 GLU291 ALA292 VAL293 ASN294 LYS295 ASP296 LYS297 PRO298 LEU299 GLY300 ALA301 VAL302 ALA303 LEU304 LYS305 SER306 TYR307 GLU308 GLU309 GLU310 LEU311 ALA312 LYS313 ASP314 PRO315 ARG316 ILE317 ALA318 ALA319 THR320 MET321 GLU322 ASN323 ALA324 GLN325 LYS326 GLY327 GLU328 ILE329 MET330 PRO331 ASN332 ILE333 PRO334 GLN335 MET336 SER337 ALA338 PHE339 TRP340 TYR341 ALA342 VAL343 ARG344 THR345 ALA346 VAL347 ILE348 ASN349 ALA350 ALA351 SER352 GLY353 ARG354 GLN355 THR356 VAL357 ASP358 ALA359 ALA360 LEU361 ALA362 ALA363 ALA364 GLN365 THR366 ASN367 ALA368 ALA369 ALA370 LEU1005 MET1006 ASP1007 PRO1008 HIS1009 ILE1010 PHE1011 THR1012 SER1013 ASN1014 PHE1015 ASN1016 ASN1017 GLY1018 ILE1019 GLY1023 ARG1024 HIS1025 LYS1026 THR1027 TYR1028 LEU1029 CYS1030 TYR1031 GLU1032 VAL1033 GLU1034 ARG1035 LEU1036 ASP1037 THR1040 SER1041 PHE1042 SER1043 LEU1044 ASP1045 PHE1046 GLY1047 TYR1048 LEU1049 ARG1050 ASN1051 LYS1052 ASN1053 GLY1054 CYS1055 HIS1056 VAL1057 GLU1058 LEU1059 LEU1060 PHE1061 LEU1062 ARG1063 TYR1064 ILE1065 SER1066 ASP1067 TRP1068 ASP1069 LEU1070 ASP1071 PRO1072 GLY1073 ARG1074 CYS1075 TYR1076 ARG1077 VAL1078 THR1079 TRP1080 PHE1081 THR1082 SER1083 TRP1084 SER1085 PRO1086 CYS1087 TYR1088 ASP1089 CYS1090 ALA1091 ARG1092 HIS1093 VAL1094 ALA1095 ASP1096 PHE1097 LEU1098 ARG1099 GLY1100 ASN1101 PRO1102 ASN1103 LEU1104 SER1105 LEU1106 ARG1107 ILE1108 PHE1109 THR1110 ALA1111 ARG1112 LEU1113 TYR1114 PHE1115 CYS1116 GLU1117 ASP1118 ARG1119 LYS1120 ALA1121 GLU1122 PRO1123 GLU1124 GLY1125 LEU1126 ARG1127 ARG1128 LEU1129 HIS1130 ARG1131 ALA1132 GLY1133 VAL1134 GLN1135 ILE1136 ALA1137 ILE1138 MET1139 THR1140 PHE1141 LYS1142 ASP1143 TYR1144 PHE1145 TYR1146 CYS1147 TRP1148 ASN1149 THR1150 PHE1151 VAL1152 GLU1153 ASN1154 HIS1155 GLU1156 ARG1157 THR1158 PHE1159 LYS1160 ALA1161 TRP1162 GLU1163 GLY1164 LEU1165 HIS1166 GLU1167 ASN1168 SER1169 VAL1170 ARG1171 LEU1172 SER1173 ARG1174 GLN1175 LEU1176 ARG1177 ARG1178 ILE1179 LEU1180 LEU1181
Unit 3 LYS1 ILE2 GLU3 GLU4 GLY5 LYS6 LEU7 VAL8 ILE9 TRP10 ILE11 ASN12 GLY13 ASP14 LYS15 GLY16 TYR17 ASN18 GLY19 LEU20 ALA21 GLU22 VAL23 GLY24 LYS25 LYS26 PHE27 GLU28 LYS29 ASP30 THR31 GLY32 ILE33 LYS34 VAL35 THR36 VAL37 GLU38 HIS39 PRO40 ASP41 LYS42 LEU43 GLU44 GLU45 LYS46 PHE47 PRO48 GLN49 VAL50 ALA51 ALA52 THR53 GLY54 ASP55 GLY56 PRO57 ASP58 ILE59 ILE60 PHE61 TRP62 ALA63 HIS64 ASP65 ARG66 PHE67 GLY68 GLY69 TYR70 ALA71 GLN72 SER73 GLY74 LEU75 LEU76 ALA77 GLU78 ILE79 THR80 PRO81 ASP82 LYS83 ALA84 PHE85 GLN86 ASP87 LYS88 LEU89 TYR90 PRO91 PHE92 THR93 TRP94 ASP95 ALA96 VAL97 ARG98 TYR99 ASN100 GLY101 LYS102 LEU103 ILE104 ALA105 TYR106 PRO107 ILE108 ALA109 VAL110 GLU111 ALA112 LEU113 SER114 LEU115 ILE116 TYR117 ASN118 LYS119 ASP120 LEU121 LEU122 PRO123 ASN124 PRO125 PRO126 LYS127 THR128 TRP129 GLU130 GLU131 ILE132 PRO133 ALA134 LEU135 ASP136 LYS137 GLU138 LEU139 LYS140 ALA141 LYS142 GLY143 LYS144 SER145 ALA146 LEU147 MET148 PHE149 ASN150 LEU151 GLN152 GLU153 PRO154 TYR155 PHE156 THR157 TRP158 PRO159 LEU160 ILE161 ALA162 ALA163 ASP164 GLY165 GLY166 TYR167 ALA168 PHE169 LYS170 TYR171 GLU172 ASN173 GLY174 LYS175 TYR176 ASP177 ILE178 LYS179 ASP180 VAL181 GLY182 VAL183 ASP184 ASN185 ALA186 GLY187 ALA188 LYS189 ALA190 GLY191 LEU192 THR193 PHE194 LEU195 VAL196 ASP197 LEU198 ILE199 LYS200 ASN201 LYS202 HIS203 MET204 ASN205 ALA206 ASP207 THR208 ASP209 TYR210 SER211 ILE212 ALA213 GLU214 ALA215 ALA216 PHE217 ASN218 LYS219 GLY220 GLU221 THR222 ALA223 MET224 THR225 ILE226 ASN227 GLY228 PRO229 TRP230 ALA231 TRP232 SER233 ASN234 ILE235 ASP236 THR237 SER238 LYS239 VAL240 ASN241 TYR242 GLY243 VAL244 THR245 VAL246 LEU247 PRO248 THR249 PHE250 LYS251 GLY252 GLN253 PRO254 SER255 LYS256 PRO257 PHE258 VAL259 GLY260 VAL261 LEU262 SER263 ALA264 GLY265 ILE266 ASN267 ALA268 ALA269 SER270 PRO271 ASN272 LYS273 GLU274 LEU275 ALA276 LYS277 GLU278 PHE279 LEU280 GLU281 ASN282 TYR283 LEU284 LEU285 THR286 ASP287 GLU288 GLY289 LEU290 GLU291 ALA292 VAL293 ASN294 LYS295 ASP296 LYS297 PRO298 LEU299 GLY300 ALA301 VAL302 ALA303 LEU304 LYS305 SER306 TYR307 GLU308 GLU309 GLU310 LEU311 ALA312 LYS313 ASP314 PRO315 ARG316 ILE317 ALA318 ALA319 THR320 MET321 GLU322 ASN323 ALA324 GLN325 LYS326 GLY327 GLU328 ILE329 MET330 PRO331 ASN332 ILE333 PRO334 GLN335 MET336 SER337 ALA338 PHE339 TRP340 TYR341 ALA342 VAL343 ARG344 THR345 ALA346 VAL347 ILE348 ASN349 ALA350 ALA351 SER352 GLY353 ARG354 GLN355 THR356 VAL357 ASP358 ALA359 ALA360 LEU361 ALA362 ALA363 ALA364 GLN365 THR366 ASN367 ALA368 ALA369 ALA370 LEU1005 MET1006 ASP1007 PRO1008 HIS1009 ILE1010 PHE1011 THR1012 SER1013 ASN1014 PHE1015 ASN1016 ASN1017 GLY1018 ILE1019 GLY1023 ARG1024 HIS1025 LYS1026 THR1027 TYR1028 LEU1029 CYS1030 TYR1031 GLU1032 VAL1033 GLU1034 ARG1035 LEU1036 ASP1037 SER1038 ALA1039 THR1040 SER1041 PHE1042 SER1043 LEU1044 ASP1045 PHE1046 GLY1047 TYR1048 LEU1049 ARG1050 ASN1051 LYS1052 ASN1053 GLY1054 CYS1055 HIS1056 VAL1057 GLU1058 LEU1059 LEU1060 PHE1061 LEU1062 ARG1063 TYR1064 ILE1065 SER1066 ASP1067 TRP1068 ASP1069 LEU1070 ASP1071 PRO1072 GLY1073 ARG1074 CYS1075 TYR1076 ARG1077 VAL1078 THR1079 TRP1080 PHE1081 THR1082 SER1083 TRP1084 SER1085 PRO1086 CYS1087 TYR1088 ASP1089 CYS1090 ALA1091 ARG1092 HIS1093 VAL1094 ALA1095 ASP1096 PHE1097 LEU1098 ARG1099 GLY1100 ASN1101 PRO1102 ASN1103 LEU1104 SER1105 LEU1106 ARG1107 ILE1108 PHE1109 THR1110 ALA1111 ARG1112 LEU1113 TYR1114 PHE1115 CYS1116 GLU1117 ASP1118 ARG1119 LYS1120 ALA1121 GLU1122 PRO1123 GLU1124 GLY1125 LEU1126 ARG1127 ARG1128 LEU1129 HIS1130 ARG1131 ALA1132 GLY1133 VAL1134 GLN1135 ILE1136 ALA1137 ILE1138 MET1139 THR1140 PHE1141 LYS1142 ASP1143 TYR1144 PHE1145 TYR1146 CYS1147 TRP1148 ASN1149 THR1150 PHE1151 VAL1152 GLU1153 ASN1154 HIS1155 GLU1156 ARG1157 THR1158 PHE1159 LYS1160 ALA1161 TRP1162 GLU1163 GLY1164 LEU1165 HIS1166 GLU1167 ASN1168 SER1169 VAL1170 ARG1171 LEU1172 SER1173 ARG1174 GLN1175 LEU1176 ARG1177 ARG1178 ILE1179 LEU1180 LEU1181 PRO1182
Ligands
Unit 4 GLC1 GLC2 GLC3 GLC4
Unit 5 GLC1 GLC2 GLC3 GLC4
Unit 6 GLC1 GLC2 GLC3 GLC4
Unit 7 ZN1201 CA1202
Unit 8 ZN1201 CA1202
Unit 9 ZN1201 CA1202
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany