5JIR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF TREPONEMA PALLIDUM PROTEIN TP0624
• Keywords: OMPA-LIKE, PEPTIDOGLYCAN, MODULAR ASSEMBLY, NEOFUNCTIONALIZE UNKNOWN FUNCTION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5JIR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	OOP FAMILY OMPA-OMPF PORIN	B	405	3182	0
2	Protein	OOP FAMILY OMPA-OMPF PORIN	A	413	3233	0
3	Ligand	OOP FAMILY OMPA-OMPF PORIN	B	6	0	11
4	Ligand	OOP FAMILY OMPA-OMPF PORIN	A	6	0	21
5	Water			346	0	346
total				1176	6415	378

Proteins

Unit 1

ASP 63 ALA 64 VAL 65 HIS 66 THR 67 ASP 68 ALA 69 VAL 70 GLN 71 ASP 72 TRP 73 LYS 74 ASN 75 GLY 76 THR 77 ILE 78 ASN 79 ALA 80 GLN 81 LEU 82 THR 83 LEU 84 ASP 85 LEU 86 ALA 87 ARG 88 ALA 89 ARG 90 MET 91 ARG 92 LEU 93 PRO 94 ALA 95 ASP 96 ARG 97 THR 98 ALA 99 ALA 100 SER 101 GLN 102 PHE 103 LEU 104 ARG 105 TYR 106 LYS 107 ALA 108 PRO 109 ALA 110 GLN 111 LEU 112 LYS 113 ASP 114 VAL 115 TYR 116 LEU 117 SER 118 VAL 119 LEU 120 VAL 121 ASP 122 SER 123 GLN 124 ASN 125 ARG 126 VAL 127 GLY 128 ASP 129 CYS 130 LEU 131 ALA 132 HIS 133 GLU 134 LYS 135 ILE 136 ARG 137 LEU 138 ALA 139 ASP 140 ILE 141 THR 142 ALA 143 LEU 144 VAL 145 ASP 146 ALA 147 GLY 148 HIS 149 HIS 150 ALA 151 VAL 152 THR 153 THR 154 LEU 155 SER 156 PRO 157 SER 158 VAL 159 ARG 160 SER 161 LEU 162 GLN 163 LEU 164 SER 165 HIS 166 GLN 167 THR 168 PRO 169 LEU 170 THR 171 ALA 172 LEU 173 ALA 174 ARG 175 LEU 176 PHE 177 VAL 178 THR 179 HIS 180 GLU 181 THR 182 ALA 183 TYR 184 VAL 185 SER 195 ARG 196 PRO 197 TYR 198 THR 199 GLY 200 ILE 201 LEU 202 ILE 203 ASP 204 ALA 205 ARG 206 GLY 207 SER 208 LEU 209 PRO 210 VAL 211 HIS 212 GLY 213 GLU 214 TYR 215 VAL 216 SER 217 GLU 218 PRO 219 LEU 220 SER 221 ALA 222 CYS 223 LEU 224 PHE 225 PRO 226 LYS 227 ILE 228 TRP 229 SER 230 THR 231 ASP 232 MET 233 ASP 234 LEU 235 ILE 236 TYR 237 GLU 238 LYS 239 ASN 240 MET 241 VAL 242 HIS 243 PRO 244 ASP 245 ARG 246 ALA 247 LYS 248 ALA 249 TRP 250 GLY 251 VAL 252 VAL 253 ARG 254 TYR 255 GLY 256 SER 257 VAL 258 TRP 259 ASP 260 GLU 261 LYS 262 MET 263 TYR 264 ARG 265 ASP 266 ARG 267 ILE 268 GLY 269 THR 270 THR 271 PRO 272 LEU 273 LYS 274 ILE 275 ILE 276 ALA 277 ARG 278 GLY 279 VAL 280 PHE 281 GLY 282 GLN 283 GLN 284 ARG 285 THR 286 ASP 287 PRO 288 ILE 289 ILE 290 ALA 291 SER 292 LYS 293 ASP 294 ALA 295 ALA 296 GLN 297 ILE 298 LEU 299 ALA 300 ARG 301 PRO 302 GLU 303 ASN 304 LEU 305 ARG 306 LEU 307 LEU 308 ALA 309 GLU 310 GLY 311 ASN 312 VAL 313 ILE 314 ILE 315 LEU 316 CYS 317 ASP 318 GLU 319 ALA 320 ALA 321 LEU 322 ARG 323 VAL 324 HIS 325 VAL 326 PRO 327 TYR 328 PRO 329 LEU 330 VAL 331 ASP 332 GLU 333 HIS 334 PHE 335 TYR 336 PHE 337 ALA 338 TYR 339 HIS 340 ASP 341 VAL 342 LYS 343 ARG 344 PHE 345 LEU 346 THR 347 ASP 348 GLU 349 ARG 350 SER 351 PRO 352 GLY 353 VAL 354 GLY 355 VAL 356 ARG 357 SER 358 GLY 359 ILE 360 ASN 361 THR 362 LEU 363 LYS 364 ILE 365 THR 366 VAL 367 TYR 368 ASP 369 VAL 370 ARG 371 PHE 372 VAL 373 ALA 374 ASN 375 SER 376 PRO 377 GLU 378 ILE 379 LEU 380 ALA 381 SER 382 GLU 383 LYS 384 ASP 385 ARG 386 VAL 387 ASP 388 VAL 389 ILE 390 ALA 391 THR 392 ALA 393 LEU 394 LYS 395 LYS 396 MET 397 GLY 398 PRO 399 TYR 400 THR 401 ARG 402 PHE 403 LEU 404 ILE 405 GLU 406 GLY 407 HIS 408 THR 409 ALA 410 ASP 411 LEU 412 HIS 413 ARG 414 PRO 415 GLN 416 GLU 417 GLU 418 ALA 419 ALA 420 LEU 421 SER 422 VAL 423 ALA 424 ARG 425 ALA 426 GLN 427 ARG 428 MET 429 ALA 430 GLN 431 GLU 432 LEU 433 SER 434 ARG 435 ARG 436 GLY 437 ILE 438 GLU 439 MET 440 THR 441 ARG 442 ILE 443 THR 444 THR 445 ALA 446 GLY 447 HIS 448 GLY 449 ALA 450 THR 451 LYS 452 PRO 453 ILE 454 ALA 455 PRO 456 SER 457 ASP 458 THR 459 HIS 460 ALA 461 ASN 462 LYS 463 ALA 464 LYS 465 ASN 466 ARG 467 ARG 468 VAL 469 GLU 470 ILE 471 THR 472 ILE 473 LEU 474 ARG 475 ASP 476

Unit 2

ALA 64 VAL 65 HIS 66 THR 67 ASP 68 ALA 69 VAL 70 GLN 71 ASP 72 TRP 73 LYS 74 ASN 75 GLY 76 THR 77 ILE 78 ASN 79 ALA 80 GLN 81 LEU 82 THR 83 LEU 84 ASP 85 LEU 86 ALA 87 ARG 88 ALA 89 ARG 90 MET 91 ARG 92 LEU 93 PRO 94 ALA 95 ASP 96 ARG 97 THR 98 ALA 99 ALA 100 SER 101 GLN 102 PHE 103 LEU 104 ARG 105 TYR 106 LYS 107 ALA 108 PRO 109 ALA 110 GLN 111 LEU 112 LYS 113 ASP 114 VAL 115 TYR 116 LEU 117 SER 118 VAL 119 LEU 120 VAL 121 ASP 122 SER 123 GLN 124 ASN 125 ARG 126 VAL 127 GLY 128 ASP 129 CYS 130 LEU 131 ALA 132 HIS 133 GLU 134 LYS 135 ILE 136 ARG 137 LEU 138 ALA 139 ASP 140 ILE 141 THR 142 ALA 143 LEU 144 VAL 145 ASP 146 ALA 147 GLY 148 HIS 149 HIS 150 ALA 151 VAL 152 THR 153 THR 154 LEU 155 SER 156 PRO 157 SER 158 VAL 159 ARG 160 SER 161 LEU 162 GLN 163 LEU 164 SER 165 HIS 166 GLN 167 THR 168 PRO 169 LEU 170 THR 171 ALA 172 LEU 173 ALA 174 ARG 175 LEU 176 PHE 177 VAL 178 THR 179 HIS 180 GLU 181 THR 182 ALA 183 TYR 184 VAL 185 PRO 186 ALA 187 ILE 188 PRO 189 PRO 190 THR 191 SER 192 ALA 193 VAL 194 SER 195 ARG 196 PRO 197 TYR 198 THR 199 GLY 200 ILE 201 LEU 202 ILE 203 ASP 204 ALA 205 ARG 206 GLY 207 SER 208 LEU 209 PRO 210 VAL 211 HIS 212 GLY 213 GLU 214 TYR 215 VAL 216 SER 217 GLU 218 PRO 219 LEU 220 SER 221 ALA 222 CYS 223 LEU 224 PHE 225 PRO 226 LYS 227 ILE 228 TRP 229 SER 230 THR 231 ASP 232 MET 233 ASP 234 LEU 235 ILE 236 TYR 237 GLU 238 LYS 239 ASN 240 MET 241 VAL 242 HIS 243 PRO 244 ASP 245 ARG 246 ALA 247 LYS 248 ALA 249 TRP 250 GLY 251 VAL 252 VAL 253 ARG 254 TYR 255 GLY 256 SER 257 VAL 258 TRP 259 ASP 260 GLU 261 LYS 262 MET 263 TYR 264 ARG 265 ASP 266 ARG 267 ILE 268 GLY 269 THR 270 THR 271 PRO 272 LEU 273 LYS 274 ILE 275 ILE 276 ALA 277 ARG 278 GLY 279 VAL 280 PHE 281 GLY 282 GLN 283 GLN 284 ARG 285 THR 286 ASP 287 PRO 288 ILE 289 ILE 290 ALA 291 SER 292 LYS 293 ASP 294 ALA 295 ALA 296 GLN 297 ILE 298 LEU 299 ALA 300 ARG 301 PRO 302 GLU 303 ASN 304 LEU 305 ARG 306 LEU 307 LEU 308 ALA 309 GLU 310 GLY 311 ASN 312 VAL 313 ILE 314 ILE 315 LEU 316 CYS 317 ASP 318 GLU 319 ALA 320 ALA 321 LEU 322 ARG 323 VAL 324 HIS 325 VAL 326 PRO 327 TYR 328 PRO 329 LEU 330 VAL 331 ASP 332 GLU 333 HIS 334 PHE 335 TYR 336 PHE 337 ALA 338 TYR 339 HIS 340 ASP 341 VAL 342 LYS 343 ARG 344 PHE 345 LEU 346 THR 347 ASP 348 GLU 349 ARG 350 SER 351 PRO 352 GLY 353 VAL 354 GLY 355 VAL 356 ARG 357 SER 358 GLY 359 ILE 360 ASN 361 THR 362 LEU 363 LYS 364 ILE 365 THR 366 VAL 367 TYR 368 ASP 369 VAL 370 ARG 371 PHE 372 VAL 373 ALA 374 ASN 375 SER 376 PRO 377 GLU 378 ILE 379 LEU 380 ALA 381 SER 382 GLU 383 LYS 384 ASP 385 ARG 386 VAL 387 ASP 388 VAL 389 ILE 390 ALA 391 THR 392 ALA 393 LEU 394 LYS 395 LYS 396 MET 397 GLY 398 PRO 399 TYR 400 THR 401 ARG 402 PHE 403 LEU 404 ILE 405 GLU 406 GLY 407 HIS 408 THR 409 ALA 410 ASP 411 LEU 412 HIS 413 ARG 414 PRO 415 GLN 416 GLU 417 GLU 418 ALA 419 ALA 420 LEU 421 SER 422 VAL 423 ALA 424 ARG 425 ALA 426 GLN 427 ARG 428 MET 429 ALA 430 GLN 431 GLU 432 LEU 433 SER 434 ARG 435 ARG 436 GLY 437 ILE 438 GLU 439 MET 440 THR 441 ARG 442 ILE 443 THR 444 THR 445 ALA 446 GLY 447 HIS 448 GLY 449 ALA 450 THR 451 LYS 452 PRO 453 ILE 454 ALA 455 PRO 456 SER 457 ASP 458 THR 459 HIS 460 ALA 461 ASN 462 LYS 463 ALA 464 LYS 465 ASN 466 ARG 467 ARG 468 VAL 469 GLU 470 ILE 471 THR 472 ILE 473 LEU 474 ARG 475 ASP 476

Ligands

Unit 3	GOL 501 CL 502 CL 503 CL 504 CL 505 CL 506
Unit 4	GOL 501 GOL 502 GOL 503 CL 504 CL 505 CL 506