Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN ACID SPHINGOMYELINASE
Keywords LYSOSOMAL HYDROLASE, NEIMANN-PICK DISEASE, SPHINGOLIPID, SAP HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5JG8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPHINGOMYELIN PHOSPHODIESTERASE  A 529 4165 0
2  Protein   SPHINGOMYELIN PHOSPHODIESTERASE  B 530 4176 0
3  Ligand    C 2 0 28
4  Ligand    D 2 0 32
5  Ligand    E 2 0 28
6  Ligand    F 3 0 39
7  Ligand    G 3 0 50
8  Ligand    H 2 0 32
9  Ligand    I 2 0 28
10  Ligand   SPHINGOMYELIN PHOSPHODIESTERASE  A 6 0 56
11  Ligand   SPHINGOMYELIN PHOSPHODIESTERASE  B 5 0 42
total       1086 8341 335

Proteins
Unit 1 GLY83 TRP84 GLY85 ASN86 LEU87 THR88 CYS89 PRO90 ILE91 CYS92 LYS93 GLY94 LEU95 PHE96 THR97 ALA98 ILE99 ASN100 LEU101 GLY102 LEU103 LYS104 LYS105 GLU106 PRO107 ASN108 VAL109 ALA110 ARG111 VAL112 GLY113 SER114 VAL115 ALA116 ILE117 LYS118 LEU119 CYS120 ASN121 LEU122 LEU123 LYS124 ILE125 ALA126 PRO127 PRO128 ALA129 VAL130 CYS131 GLN132 SER133 ILE134 VAL135 HIS136 LEU137 PHE138 GLU139 ASP140 ASP141 MET142 VAL143 GLU144 VAL145 TRP146 ARG147 ARG148 SER149 VAL150 LEU151 SER152 PRO153 SER154 GLU155 ALA156 CYS157 GLY158 LEU159 LEU160 LEU161 GLY162 SER163 THR164 CYS165 GLY166 HIS167 TRP168 ASP169 ILE170 PHE171 SER172 SER173 TRP174 ASN175 ILE176 SER177 LEU178 PRO179 THR180 VAL181 PRO182 LYS183 PRO184 PRO185 PRO186 LYS187 PRO188 PRO189 SER190 PRO191 PRO192 ALA193 PRO194 GLY195 ALA196 PRO197 VAL198 SER199 ARG200 ILE201 LEU202 PHE203 LEU204 THR205 ASP206 LEU207 HIS208 TRP209 ASP210 HIS211 ASP212 TYR213 LEU214 GLU215 GLY216 THR217 ASP218 PRO219 ASP220 CYS221 ALA222 ASP223 PRO224 LEU225 CYS226 CYS227 ARG228 ARG229 GLY230 SER231 GLY232 LEU233 PRO234 PRO235 ALA236 SER237 ARG238 PRO239 GLY240 ALA241 GLY242 TYR243 TRP244 GLY245 GLU246 TYR247 SER248 LYS249 CYS250 ASP251 LEU252 PRO253 LEU254 ARG255 THR256 LEU257 GLU258 SER259 LEU260 LEU261 SER262 GLY263 LEU264 GLY265 PRO266 ALA267 GLY268 PRO269 PHE270 ASP271 MET272 VAL273 TYR274 TRP275 THR276 GLY277 ASP278 ILE279 PRO280 ALA281 HIS282 ASP283 VAL284 TRP285 HIS286 GLN287 THR288 ARG289 GLN290 ASP291 GLN292 LEU293 ARG294 ALA295 LEU296 THR297 THR298 VAL299 THR300 ALA301 LEU302 VAL303 ARG304 LYS305 PHE306 LEU307 GLY308 PRO309 VAL310 PRO311 VAL312 TYR313 PRO314 ALA315 VAL316 GLY317 ASN318 HIS319 GLU320 SER321 THR322 PRO323 VAL324 ASN325 SER326 PHE327 PRO328 PRO329 PRO330 PHE331 ILE332 GLU333 GLY334 ASN335 HIS336 SER337 SER338 ARG339 TRP340 LEU341 TYR342 GLU343 ALA344 MET345 ALA346 LYS347 ALA348 TRP349 GLU350 PRO351 TRP352 LEU353 PRO354 ALA355 GLU356 ALA357 LEU358 ARG359 THR360 LEU361 ARG362 ILE363 GLY364 GLY365 PHE366 TYR367 ALA368 LEU369 SER370 PRO371 TYR372 PRO373 GLY374 LEU375 ARG376 LEU377 ILE378 SER379 LEU380 ASN381 MET382 ASN383 PHE384 CYS385 SER386 ARG387 GLU388 ASN389 PHE390 TRP391 LEU392 LEU393 ILE394 ASN395 SER396 THR397 ASP398 PRO399 ALA400 GLY401 GLN402 LEU403 GLN404 TRP405 LEU406 VAL407 GLY408 GLU409 LEU410 GLN411 ALA412 ALA413 GLU414 ASP415 ARG416 GLY417 ASP418 LYS419 VAL420 HIS421 ILE422 ILE423 GLY424 HIS425 ILE426 PRO427 PRO428 GLY429 HIS430 CYS431 LEU432 LYS433 SER434 TRP435 SER436 TRP437 ASN438 TYR439 TYR440 ARG441 ILE442 VAL443 ALA444 ARG445 TYR446 GLU447 ASN448 THR449 LEU450 ALA451 ALA452 GLN453 PHE454 PHE455 GLY456 HIS457 THR458 HIS459 VAL460 ASP461 GLU462 PHE463 GLU464 VAL465 PHE466 TYR467 ASP468 GLU469 GLU470 THR471 LEU472 SER473 ARG474 PRO475 LEU476 ALA477 VAL478 ALA479 PHE480 LEU481 ALA482 PRO483 SER484 ALA485 THR486 THR487 TYR488 ILE489 GLY490 LEU491 ASN492 PRO493 GLY494 TYR495 ARG496 VAL497 TYR498 GLN499 ILE500 ASP501 GLY502 ASN503 TYR504 SER505 GLY506 SER507 SER508 HIS509 VAL510 VAL511 LEU512 ASP513 HIS514 GLU515 THR516 TYR517 ILE518 LEU519 ASN520 LEU521 THR522 GLN523 ALA524 ASN525 ILE526 PRO527 GLY528 ALA529 ILE530 PRO531 HIS532 TRP533 GLN534 LEU535 LEU536 TYR537 ARG538 ALA539 ARG540 GLU541 THR542 TYR543 GLY544 LEU545 PRO546 ASN547 THR548 LEU549 PRO550 THR551 ALA552 TRP553 HIS554 ASN555 LEU556 VAL557 TYR558 ARG559 MET560 ARG561 GLY562 ASP563 MET564 GLN565 LEU566 PHE567 GLN568 THR569 PHE570 TRP571 PHE572 LEU573 TYR574 HIS575 LYS576 GLY577 HIS578 PRO579 PRO580 SER581 GLU582 PRO583 CYS584 GLY585 THR586 PRO587 CYS588 ARG589 LEU590 ALA591 THR592 LEU593 CYS594 ALA595 GLN596 LEU597 SER598 ALA599 ARG600 ALA601 ASP602 SER603 PRO604 ALA605 LEU606 CYS607 ARG608 HIS609 LEU610 MET611
Unit 2 PHE82 GLY83 TRP84 GLY85 ASN86 LEU87 THR88 CYS89 PRO90 ILE91 CYS92 LYS93 GLY94 LEU95 PHE96 THR97 ALA98 ILE99 ASN100 LEU101 GLY102 LEU103 LYS104 LYS105 GLU106 PRO107 ASN108 VAL109 ALA110 ARG111 VAL112 GLY113 SER114 VAL115 ALA116 ILE117 LYS118 LEU119 CYS120 ASN121 LEU122 LEU123 LYS124 ILE125 ALA126 PRO127 PRO128 ALA129 VAL130 CYS131 GLN132 SER133 ILE134 VAL135 HIS136 LEU137 PHE138 GLU139 ASP140 ASP141 MET142 VAL143 GLU144 VAL145 TRP146 ARG147 ARG148 SER149 VAL150 LEU151 SER152 PRO153 SER154 GLU155 ALA156 CYS157 GLY158 LEU159 LEU160 LEU161 GLY162 SER163 THR164 CYS165 GLY166 HIS167 TRP168 ASP169 ILE170 PHE171 SER172 SER173 TRP174 ASN175 ILE176 SER177 LEU178 PRO179 THR180 VAL181 PRO182 LYS183 PRO184 PRO185 PRO186 LYS187 PRO188 PRO189 SER190 PRO191 PRO192 ALA193 PRO194 GLY195 ALA196 PRO197 VAL198 SER199 ARG200 ILE201 LEU202 PHE203 LEU204 THR205 ASP206 LEU207 HIS208 TRP209 ASP210 HIS211 ASP212 TYR213 LEU214 GLU215 GLY216 THR217 ASP218 PRO219 ASP220 CYS221 ALA222 ASP223 PRO224 LEU225 CYS226 CYS227 ARG228 ARG229 GLY230 SER231 GLY232 LEU233 PRO234 PRO235 ALA236 SER237 ARG238 PRO239 GLY240 ALA241 GLY242 TYR243 TRP244 GLY245 GLU246 TYR247 SER248 LYS249 CYS250 ASP251 LEU252 PRO253 LEU254 ARG255 THR256 LEU257 GLU258 SER259 LEU260 LEU261 SER262 GLY263 LEU264 GLY265 PRO266 ALA267 GLY268 PRO269 PHE270 ASP271 MET272 VAL273 TYR274 TRP275 THR276 GLY277 ASP278 ILE279 PRO280 ALA281 HIS282 ASP283 VAL284 TRP285 HIS286 GLN287 THR288 ARG289 GLN290 ASP291 GLN292 LEU293 ARG294 ALA295 LEU296 THR297 THR298 VAL299 THR300 ALA301 LEU302 VAL303 ARG304 LYS305 PHE306 LEU307 GLY308 PRO309 VAL310 PRO311 VAL312 TYR313 PRO314 ALA315 VAL316 GLY317 ASN318 HIS319 GLU320 SER321 THR322 PRO323 VAL324 ASN325 SER326 PHE327 PRO328 PRO329 PRO330 PHE331 ILE332 GLU333 GLY334 ASN335 HIS336 SER337 SER338 ARG339 TRP340 LEU341 TYR342 GLU343 ALA344 MET345 ALA346 LYS347 ALA348 TRP349 GLU350 PRO351 TRP352 LEU353 PRO354 ALA355 GLU356 ALA357 LEU358 ARG359 THR360 LEU361 ARG362 ILE363 GLY364 GLY365 PHE366 TYR367 ALA368 LEU369 SER370 PRO371 TYR372 PRO373 GLY374 LEU375 ARG376 LEU377 ILE378 SER379 LEU380 ASN381 MET382 ASN383 PHE384 CYS385 SER386 ARG387 GLU388 ASN389 PHE390 TRP391 LEU392 LEU393 ILE394 ASN395 SER396 THR397 ASP398 PRO399 ALA400 GLY401 GLN402 LEU403 GLN404 TRP405 LEU406 VAL407 GLY408 GLU409 LEU410 GLN411 ALA412 ALA413 GLU414 ASP415 ARG416 GLY417 ASP418 LYS419 VAL420 HIS421 ILE422 ILE423 GLY424 HIS425 ILE426 PRO427 PRO428 GLY429 HIS430 CYS431 LEU432 LYS433 SER434 TRP435 SER436 TRP437 ASN438 TYR439 TYR440 ARG441 ILE442 VAL443 ALA444 ARG445 TYR446 GLU447 ASN448 THR449 LEU450 ALA451 ALA452 GLN453 PHE454 PHE455 GLY456 HIS457 THR458 HIS459 VAL460 ASP461 GLU462 PHE463 GLU464 VAL465 PHE466 TYR467 ASP468 GLU469 GLU470 THR471 LEU472 SER473 ARG474 PRO475 LEU476 ALA477 VAL478 ALA479 PHE480 LEU481 ALA482 PRO483 SER484 ALA485 THR486 THR487 TYR488 ILE489 GLY490 LEU491 ASN492 PRO493 GLY494 TYR495 ARG496 VAL497 TYR498 GLN499 ILE500 ASP501 GLY502 ASN503 TYR504 SER505 GLY506 SER507 SER508 HIS509 VAL510 VAL511 LEU512 ASP513 HIS514 GLU515 THR516 TYR517 ILE518 LEU519 ASN520 LEU521 THR522 GLN523 ALA524 ASN525 ILE526 PRO527 GLY528 ALA529 ILE530 PRO531 HIS532 TRP533 GLN534 LEU535 LEU536 TYR537 ARG538 ALA539 ARG540 GLU541 THR542 TYR543 GLY544 LEU545 PRO546 ASN547 THR548 LEU549 PRO550 THR551 ALA552 TRP553 HIS554 ASN555 LEU556 VAL557 TYR558 ARG559 MET560 ARG561 GLY562 ASP563 MET564 GLN565 LEU566 PHE567 GLN568 THR569 PHE570 TRP571 PHE572 LEU573 TYR574 HIS575 LYS576 GLY577 HIS578 PRO579 PRO580 SER581 GLU582 PRO583 CYS584 GLY585 THR586 PRO587 CYS588 ARG589 LEU590 ALA591 THR592 LEU593 CYS594 ALA595 GLN596 LEU597 SER598 ALA599 ARG600 ALA601 ASP602 SER603 PRO604 ALA605 LEU606 CYS607 ARG608 HIS609 LEU610 MET611

Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NAG2
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2 MAN3
Unit 7 NAG1 NAG2 MAN3
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 ZN701 ZN702 ACT703 NAG704 NAG705 NAG712
Unit 11 ZN701 ZN702 ACT703 NAG704 NAG705

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany