5JDB - Sequence, Chains, Asymmetric and Biological Units

• Title: BINDING SPECIFICITY OF P[8] VP8* PROTEINS OF ROTAVIRUS VACCI WITH HISTO-BLOOD GROUP ANTIGENS
• Keywords: ROTAVIRUS, VP8, VACCINE, VIRAL PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5JDB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	OUTER CAPSID PROTEIN VP4	A	160	1308	0
2	Protein	OUTER CAPSID PROTEIN VP4	B	160	1308	0
3	Protein	OUTER CAPSID PROTEIN VP4	C	160	1308	0
4	Protein	OUTER CAPSID PROTEIN VP4	D	160	1308	0
5	Protein	OUTER CAPSID PROTEIN VP4	E	160	1308	0
6	Protein	OUTER CAPSID PROTEIN VP4	F	160	1308	0
7	Water			483	0	483
total				1443	7848	483

Proteins

Unit 1	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160
Unit 2	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160
Unit 3	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160
Unit 4	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160
Unit 5	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160
Unit 6	ILE 1 LEU 2 ASP 3 GLY 4 PRO 5 TYR 6 GLN 7 PRO 8 THR 9 THR 10 PHE 11 THR 12 PRO 13 PRO 14 ILE 15 ASP 16 TYR 17 TRP 18 ILE 19 LEU 20 ILE 21 ASN 22 SER 23 ASN 24 THR 25 ASN 26 GLY 27 VAL 28 VAL 29 TYR 30 GLU 31 SER 32 THR 33 ASN 34 ASN 35 SER 36 ASP 37 PHE 38 TRP 39 THR 40 ALA 41 VAL 42 VAL 43 ALA 44 ILE 45 GLU 46 PRO 47 HIS 48 VAL 49 ASN 50 PRO 51 VAL 52 ASP 53 ARG 54 GLN 55 TYR 56 THR 57 VAL 58 PHE 59 GLY 60 GLU 61 ASN 62 LYS 63 GLN 64 PHE 65 ASN 66 VAL 67 ARG 68 ASN 69 ASP 70 SER 71 ASP 72 LYS 73 TRP 74 LYS 75 PHE 76 LEU 77 GLU 78 MET 79 PHE 80 ARG 81 SER 82 SER 83 SER 84 GLN 85 ASN 86 GLU 87 PHE 88 TYR 89 ASN 90 ARG 91 ARG 92 THR 93 LEU 94 THR 95 SER 96 ASP 97 THR 98 LYS 99 LEU 100 VAL 101 GLY 102 ILE 103 LEU 104 LYS 105 TYR 106 GLY 107 GLY 108 ARG 109 ILE 110 TRP 111 THR 112 PHE 113 HIS 114 GLY 115 GLU 116 THR 117 PRO 118 ARG 119 ALA 120 THR 121 THR 122 ASP 123 SER 124 SER 125 ASN 126 THR 127 ALA 128 ASN 129 LEU 130 ASN 131 ASP 132 ILE 133 SER 134 ILE 135 ILE 136 ILE 137 HIS 138 SER 139 GLU 140 PHE 141 TYR 142 ILE 143 ILE 144 PRO 145 ARG 146 SER 147 GLN 148 GLU 149 SER 150 LYS 151 CYS 152 ASN 153 GLU 154 TYR 155 ILE 156 ASN 157 ASN 158 GLY 159 LEU 160