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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CHICKEN MDA5 WITH 5'P 10-MER DSRNA AND AT 2.95 A RESOLUTION (UNTWINNED).
Keywords INNATE IMMUNE PATTERN RECOGNITION RECEPTOR, RIG-I LIKE HELIC DSRNA DEPENDENT ATPASE, ZINC-CONTAINING CTD DOMAIN, IMMUNE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JCH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MELANOMA DIFFERENTIATION ASSOCIATED PROTEIN-5  A 661 5396 0
2  RNA    X 10 214 0
3  RNA    Y 10 213 0
4  Protein   MELANOMA DIFFERENTIATION ASSOCIATED PROTEIN-5  B 655 5353 0
5  RNA    U 10 214 0
6  RNA    V 10 213 0
7  Ligand   MELANOMA DIFFERENTIATION ASSOCIATED PROTEIN-5  A 3 0 29
8  Ligand   MELANOMA DIFFERENTIATION ASSOCIATED PROTEIN-5  B 3 0 29
total       1362 11603 58
Proteins
Unit 1 ASP298 LEU299 THR300 LEU301 ARG302 ASP303 TYR304 GLN305 MET306 GLU307 VAL308 ALA309 LYS310 PRO311 ALA312 LEU313 ASN314 GLY315 GLU316 ASN317 ILE318 ILE319 ILE320 CYS321 LEU322 PRO323 THR324 GLY325 SER326 GLY327 LYS328 THR329 ARG330 VAL331 ALA332 VAL333 TYR334 ILE335 THR336 LYS337 ASP338 HIS339 LEU340 ASP341 LYS342 LYS343 ARG344 LYS345 ALA346 SER347 GLU348 GLN349 GLY350 LYS351 VAL352 ILE353 VAL354 LEU355 VAL356 ASN357 LYS358 VAL359 PRO360 LEU361 VAL362 GLU363 GLN364 HIS365 LEU366 ARG367 LYS368 GLU369 PHE370 ASN371 PRO372 PHE373 LEU374 LYS375 HIS376 TRP377 TYR378 GLN379 VAL380 ILE381 GLY382 LEU383 SER384 GLY385 ASP386 SER387 GLU388 LEU389 LYS390 ILE391 SER392 PHE393 PRO394 GLU395 VAL396 VAL397 LYS398 ARG399 TYR400 ASP401 VAL402 ILE403 ILE404 CYS405 THR406 ALA407 GLN408 ILE409 LEU410 GLU411 ASN412 SER413 LEU414 LEU415 ASN416 GLU422 SER423 VAL424 ARG425 LEU426 SER427 ASP428 PHE429 SER430 LEU431 ILE432 ILE433 ILE434 ASP435 GLN436 CYS437 HIS438 HIS439 THR440 GLN441 LYS442 GLU443 GLY444 VAL445 TYR446 ASN447 ASN448 ILE449 MET450 ARG451 ARG452 TYR453 LEU454 LYS455 GLU456 LYS457 ILE458 LYS459 ASN460 ARG461 LYS462 GLN463 ALA464 LYS465 GLU466 LEU470 ILE471 PRO472 GLN473 PRO474 GLN475 ILE476 LEU477 GLY478 LEU479 THR480 ALA481 SER482 PRO483 GLY484 VAL485 GLY486 GLY487 ALA488 ARG489 SER490 ASN491 SER492 LYS493 ALA494 GLU495 GLU496 HIS497 ILE498 LEU499 LYS500 ILE501 CYS502 ALA503 ASN504 LEU505 ASP506 ALA507 CYS508 ARG509 ILE510 MET511 THR512 VAL513 LYS514 GLU515 HIS516 ALA517 SER518 GLN519 LEU520 LYS521 ASN522 GLN523 VAL524 LYS525 GLU526 PRO527 PHE528 LYS529 LYS530 THR531 VAL532 ILE533 ALA534 ASP535 ASP536 LYS537 ARG538 ARG539 ASP540 PRO541 PHE542 ARG543 GLU544 ARG545 ILE546 ILE547 GLU548 ILE549 MET550 GLN551 ASP552 ILE553 GLN554 LYS555 TYR556 CYS557 GLN558 LEU559 TYR560 PRO561 LYS562 SER563 GLU564 PHE565 GLY566 SER567 GLN568 PRO569 TYR570 GLU571 GLN572 TRP573 VAL574 ILE575 ARG576 GLU577 GLU578 ARG579 ARG580 ALA581 ALA582 LYS583 GLU584 GLU585 LYS586 ARG587 LYS588 GLU589 ARG590 VAL591 CYS592 ALA593 GLU594 HIS595 LEU596 LYS597 LYS598 TYR599 ASN600 ASP601 ALA602 LEU603 GLN604 ILE605 ASN606 ASP607 THR608 ILE609 ARG610 MET611 VAL612 ASP613 ALA614 TYR615 ASN616 HIS617 LEU618 ASN619 ASN620 PHE621 TYR622 LYS623 GLU624 LEU625 LYS626 ARG627 ARG628 LYS629 THR630 ALA631 GLU632 SER633 ASP634 ASP635 SER642 LYS643 GLN644 ASP645 GLU646 THR647 ASP648 GLU649 PHE650 LEU651 MET652 ARG653 LEU654 PHE655 HIS656 ALA657 LYS658 LYS659 LYS660 GLN661 LEU662 LYS663 GLU664 LEU665 ALA666 ARG667 LYS668 PRO669 GLU670 TYR671 ASP672 ASN673 GLU674 LYS675 LEU676 MET677 LYS678 LEU679 ARG680 ASN681 THR682 LEU683 MET684 GLU685 GLU686 PHE687 THR688 LYS689 THR690 GLU691 GLU692 PRO693 ARG694 GLY695 ILE696 ILE697 PHE698 THR699 LYS700 THR701 ARG702 GLN703 SER704 ALA705 LEU706 ALA707 LEU708 TYR709 HIS710 TRP711 ILE712 MET713 ASP714 ASN715 PRO716 LYS717 PHE718 GLU719 GLU720 VAL721 GLY722 ILE723 LYS724 ALA725 HIS726 PHE727 LEU728 ILE729 GLY730 ALA731 GLY732 HIS733 ASN734 SER735 GLU736 THR737 LYS738 PRO739 MET740 THR741 GLN742 ASN743 GLU744 GLN745 ARG746 GLU747 VAL748 ILE749 ASP750 LYS751 PHE752 ARG753 GLY754 GLY755 SER756 ILE757 ASN758 LEU759 LEU760 ILE761 ALA762 THR763 THR764 VAL765 ALA766 GLU767 GLU768 GLY769 LEU770 ASP771 ILE772 LYS773 GLU774 CYS775 ASN776 ILE777 VAL778 ILE779 ARG780 TYR781 GLY782 LEU783 VAL784 THR785 ASN786 GLU787 ILE788 ALA789 MET790 VAL791 GLN792 ALA793 ARG794 GLY795 ARG796 ALA797 ARG798 ALA799 ASP800 GLU801 SER802 THR803 TYR804 ALA805 LEU806 VAL807 ALA808 SER809 SER810 GLY811 SER812 GLY813 ALA814 VAL815 GLU816 ARG817 GLU818 ASP819 VAL820 ASN821 ILE822 PHE823 ARG824 GLU825 ASN826 MET827 MET828 TYR829 LYS830 ALA831 ILE832 ARG833 ARG834 VAL835 GLN836 GLU837 MET838 PRO839 PRO840 GLU841 GLU842 TYR843 LEU844 ASN845 LYS846 ILE847 GLN848 ASP849 PHE850 GLN851 LEU852 GLN853 SER854 ILE855 VAL856 GLU857 LYS858 GLN859 MET860 LYS861 ALA862 LYS863 ARG864 ASP865 GLN866 ARG867 LYS871 LYS872 ASN873 PRO874 SER875 LEU876 ILE877 THR878 PHE879 LEU880 CYS881 LYS882 ASN883 CYS884 HIS885 LYS886 LEU887 ILE888 CYS889 SER890 GLY891 GLU892 ASP893 ILE894 GLN895 VAL896 ILE897 GLU898 ASN899 MET900 HIS901 HIS902 VAL903 SER904 VAL905 LYS906 LYS907 ASP908 PHE909 GLN910 HIS911 LEU912 TYR913 HIS914 LYS915 ARG916 GLU917 ASN918 GLN929 THR930 ASN931 VAL932 GLU933 ILE934 ILE935 CYS936 LYS937 ASP938 CYS939 GLY940 GLN941 VAL942 TRP943 GLY944 ASN945 MET946 MET947 VAL948 TYR949 ARG950 GLY951 LEU952 ASP953 LEU954 PRO955 CYS956 LEU957 LYS958 ILE959 ARG960 ASN961 PHE962 VAL963 VAL964 ALA965 PHE966 GLU967 ASP968 THR972 LYS973 GLU974 ILE975 PHE976 LYS977 LYS978 TRP979 GLY980 GLU981 LEU982 PRO983 ILE984 ILE985 PHE986 PRO987 ASP988
Unit 4 ASP298 LEU299 THR300 LEU301 ARG302 ASP303 TYR304 GLN305 MET306 GLU307 VAL308 ALA309 LYS310 PRO311 ALA312 LEU313 ASN314 GLY315 GLU316 ASN317 ILE318 ILE319 ILE320 CYS321 LEU322 PRO323 THR324 GLY325 SER326 GLY327 LYS328 THR329 ARG330 VAL331 ALA332 VAL333 TYR334 ILE335 THR336 LYS337 ASP338 HIS339 LEU340 ASP341 LYS342 LYS343 ARG344 LYS345 ALA346 SER347 GLU348 GLN349 GLY350 LYS351 VAL352 ILE353 VAL354 LEU355 VAL356 ASN357 LYS358 VAL359 PRO360 LEU361 VAL362 GLU363 GLN364 HIS365 LEU366 ARG367 LYS368 GLU369 PHE370 ASN371 PRO372 PHE373 LEU374 LYS375 HIS376 TRP377 TYR378 GLN379 VAL380 ILE381 GLY382 LEU383 SER384 GLY385 ASP386 SER387 GLU388 LEU389 LYS390 ILE391 SER392 PHE393 PRO394 GLU395 VAL396 VAL397 LYS398 ARG399 TYR400 ASP401 VAL402 ILE403 ILE404 CYS405 THR406 ALA407 GLN408 ILE409 LEU410 GLU411 ASN412 SER413 LEU414 LEU415 ASN416 GLU422 SER423 VAL424 ARG425 LEU426 SER427 ASP428 PHE429 SER430 LEU431 ILE432 ILE433 ILE434 ASP435 GLN436 CYS437 HIS438 HIS439 THR440 GLN441 LYS442 GLU443 GLY444 VAL445 TYR446 ASN447 ASN448 ILE449 MET450 ARG451 ARG452 TYR453 LEU454 LYS455 GLU456 LYS457 ILE458 LYS459 ASN460 ARG461 LYS462 GLN463 ALA464 LYS465 GLU466 LEU470 ILE471 PRO472 GLN473 PRO474 GLN475 ILE476 LEU477 GLY478 LEU479 THR480 ALA481 SER482 PRO483 GLY484 VAL485 GLY486 GLY487 ALA488 ARG489 SER490 ASN491 SER492 LYS493 ALA494 GLU495 GLU496 HIS497 ILE498 LEU499 LYS500 ILE501 CYS502 ALA503 ASN504 LEU505 ASP506 ALA507 CYS508 ARG509 ILE510 MET511 THR512 VAL513 LYS514 GLU515 HIS516 ALA517 SER518 GLN519 LEU520 LYS521 ASN522 GLN523 VAL524 LYS525 GLU526 PRO527 PHE528 LYS529 LYS530 THR531 VAL532 ILE533 ALA534 ASP535 ASP536 LYS537 ARG538 ARG539 ASP540 PRO541 PHE542 ARG543 GLU544 ARG545 ILE546 ILE547 GLU548 ILE549 MET550 GLN551 ASP552 ILE553 GLN554 LYS555 TYR556 CYS557 GLN558 LEU559 TYR560 PRO561 LYS562 SER563 GLU564 PHE565 GLY566 SER567 GLN568 PRO569 TYR570 GLU571 GLN572 TRP573 VAL574 ILE575 ARG576 GLU577 GLU578 ARG579 ARG580 ALA581 ALA582 LYS583 GLU584 GLU585 LYS586 ARG587 LYS588 GLU589 ARG590 VAL591 CYS592 ALA593 GLU594 HIS595 LEU596 LYS597 LYS598 TYR599 ASN600 ASP601 ALA602 LEU603 GLN604 ILE605 ASN606 ASP607 THR608 ILE609 ARG610 MET611 VAL612 ASP613 ALA614 TYR615 ASN616 HIS617 LEU618 ASN619 ASN620 PHE621 TYR622 LYS623 GLU624 LEU625 LYS626 ARG627 ARG628 LYS629 THR630 ALA631 GLU632 SER633 ASP634 ASP635 SER642 LYS643 GLN644 ASP645 GLU646 THR647 ASP648 GLU649 PHE650 LEU651 MET652 ARG653 LEU654 PHE655 HIS656 ALA657 LYS658 LYS659 LYS660 GLN661 LEU662 LYS663 GLU664 LEU665 ALA666 ARG667 LYS668 PRO669 GLU670 TYR671 ASP672 ASN673 GLU674 LYS675 LEU676 MET677 LYS678 LEU679 ARG680 ASN681 THR682 LEU683 MET684 GLU685 GLU686 PHE687 THR688 LYS689 THR690 GLU691 GLU692 PRO693 ARG694 GLY695 ILE696 ILE697 PHE698 THR699 LYS700 THR701 ARG702 GLN703 SER704 ALA705 LEU706 ALA707 LEU708 TYR709 HIS710 TRP711 ILE712 MET713 ASP714 ASN715 PRO716 LYS717 PHE718 GLU719 GLU720 VAL721 GLY722 ILE723 LYS724 ALA725 HIS726 PHE727 LEU728 ILE729 GLY730 ALA731 GLY732 HIS733 ASN734 SER735 GLU736 THR737 LYS738 PRO739 MET740 THR741 GLN742 ASN743 GLU744 GLN745 ARG746 GLU747 VAL748 ILE749 ASP750 LYS751 PHE752 ARG753 GLY754 GLY755 SER756 ILE757 ASN758 LEU759 LEU760 ILE761 ALA762 THR763 THR764 VAL765 ALA766 GLU767 GLU768 GLY769 LEU770 ASP771 ILE772 LYS773 GLU774 CYS775 ASN776 ILE777 VAL778 ILE779 ARG780 TYR781 GLY782 LEU783 VAL784 THR785 ASN786 GLU787 ILE788 ALA789 MET790 VAL791 GLN792 ALA793 ARG794 GLY795 ARG796 ALA797 ARG798 ALA799 ASP800 GLU801 SER802 THR803 TYR804 ALA805 LEU806 VAL807 ALA808 SER809 SER810 GLY811 SER812 GLY813 ALA814 VAL815 GLU816 ARG817 GLU818 ASP819 VAL820 ASN821 ILE822 PHE823 ARG824 GLU825 ASN826 MET827 MET828 TYR829 LYS830 ALA831 ILE832 ARG833 ARG834 VAL835 GLN836 GLU837 MET838 PRO839 PRO840 GLU841 GLU842 TYR843 LEU844 ASN845 LYS846 ILE847 GLN848 ASP849 PHE850 GLN851 LEU852 GLN853 SER854 ILE855 VAL856 GLU857 LYS858 GLN859 MET860 LYS861 ALA862 LYS863 ARG864 ASP865 GLN866 ARG867 ILE877 THR878 PHE879 LEU880 CYS881 LYS882 ASN883 CYS884 HIS885 LYS886 LEU887 ILE888 CYS889 SER890 GLY891 GLU892 ASP893 ILE894 GLN895 VAL896 ILE897 GLU898 ASN899 MET900 HIS901 HIS902 VAL903 SER904 VAL905 LYS906 LYS907 ASP908 PHE909 GLN910 HIS911 LEU912 TYR913 HIS914 LYS915 ARG916 GLU917 ASN918 GLN929 THR930 ASN931 VAL932 GLU933 ILE934 ILE935 CYS936 LYS937 ASP938 CYS939 GLY940 GLN941 VAL942 TRP943 GLY944 ASN945 MET946 MET947 VAL948 TYR949 ARG950 GLY951 LEU952 ASP953 LEU954 PRO955 CYS956 LEU957 LYS958 ILE959 ARG960 ASN961 PHE962 VAL963 VAL964 ALA965 PHE966 GLU967 ASP968 THR972 LYS973 GLU974 ILE975 PHE976 LYS977 LYS978 TRP979 GLY980 GLU981 LEU982 PRO983 ILE984 ILE985 PHE986 PRO987 ASP988
Nucleic acids
Unit 2 G1 G2 U3 A4 C5 G6 U7 A8 C9 C10
Unit 3 G1 G2 U3 A4 C5 G6 U7 A8 C9 C10
Unit 5 G1 G2 U3 A4 C5 G6 U7 A8 C9 C10
Unit 6 G1 G2 U3 A4 C5 G6 U7 A8 C9 C10
Ligands
Unit 7 ZN1001 ADP1002 MG1003
Unit 8 ZN1001 ADP1002 MG1003
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany