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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF S. POMBE DCP2:DCP1:EDC1 MRNA DECAPPING
Keywords HYDROLASE, DECAPPING, MRNA DECAY, EVH1, NUDIX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5J3T     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MRNA-DECAPPING ENZYME SUBUNIT 1  A 126 1051 0
2  Protein   MRNA DECAPPING COMPLEX SUBUNIT 2  B 230 1895 0
3  Protein   EDC1  C 25 188 0
4  Ligand   MRNA-DECAPPING ENZYME SUBUNIT 1  A 2 0 6
5  Ligand   MRNA DECAPPING COMPLEX SUBUNIT 2  B 4 0 10
6 Water     215 0 215
total       602 3134 231

Proteins
Unit 1 GLU2 ASP3 GLU4 ASN5 ILE6 LEU7 ARG8 ASN9 ALA10 VAL11 ASN12 LEU13 GLN14 VAL15 LEU16 LYS17 PHE18 HIS19 TYR20 PRO21 GLU22 ILE23 GLU24 SER25 ILE26 ILE27 ASP28 ILE29 ALA30 SER31 HIS32 VAL33 ALA34 VAL35 TYR36 GLN37 PHE38 ASP39 VAL40 GLY41 SER42 GLN43 LYS44 TRP45 LEU46 LYS47 THR48 SER49 ILE50 GLU51 GLY52 THR53 PHE54 PHE55 LEU56 VAL57 LYS58 ASP59 GLN60 ARG61 ALA62 ARG63 VAL64 GLY65 TYR66 VAL67 ILE68 LEU69 ASN70 ARG71 ASN72 SER73 PRO74 GLU75 ASN76 LEU77 TYR78 LEU79 PHE80 ILE81 ASN82 HIS83 PRO84 SER85 ASN86 VAL87 HIS88 LEU89 VAL90 ASP91 ARG92 TYR93 LEU94 ILE95 HIS96 ARG97 THR98 GLU99 ASN100 GLN101 HIS102 VAL103 VAL104 GLY105 LEU106 TRP107 MET108 PHE109 ASP110 PRO111 ASN112 ASP113 MET114 SER115 ARG116 ILE117 PHE118 ASN119 ILE120 VAL121 LYS122 GLU123 SER124 LEU125 LEU126 ARG127
Unit 2 SER2 PHE3 THR4 ASN5 ALA6 THR7 PHE8 SER9 GLN10 VAL11 LEU12 ASP13 ASP14 LEU15 SER16 ALA17 ARG18 PHE19 ILE20 LEU21 ASN22 LEU23 PRO24 ALA25 GLU26 GLU27 GLN28 SER29 SER30 VAL31 GLU32 ARG33 LEU34 CYS35 PHE36 GLN37 ILE38 GLU39 GLN40 ALA41 HIS42 TRP43 PHE44 TYR45 GLU46 ASP47 PHE48 ILE49 ARG50 ALA51 GLN52 ASN53 ASP54 GLN55 LEU56 PRO57 SER58 LEU59 GLY60 LEU61 ARG62 VAL63 PHE64 SER65 ALA66 LYS67 LEU68 PHE69 ALA70 HIS71 CYS72 PRO73 LEU74 LEU75 TRP76 LYS77 TRP78 SER79 LYS80 VAL81 HIS82 GLU83 GLU84 ALA85 PHE86 ASP87 ASP88 PHE89 LEU90 ARG91 TYR92 LYS93 THR94 ARG95 ILE96 PRO97 VAL98 ARG99 GLY100 ALA101 ILE102 MET103 LEU104 ASP105 MET106 SER107 MET108 GLN109 GLN110 CYS111 VAL112 LEU113 VAL114 LYS115 GLY116 TRP117 LYS118 ALA119 SER120 SER121 GLY122 TRP123 GLY124 PHE125 PRO126 LYS127 GLY128 LYS129 ILE130 ASP131 LYS132 ASP133 GLU134 SER135 ASP136 VAL137 ASP138 CYS139 ALA140 ILE141 ARG142 GLU143 VAL144 TYR145 GLU146 GLU147 THR148 GLY149 PHE150 ASP151 CYS152 SER153 SER154 ARG155 ILE156 ASN157 PRO158 ASN159 GLU160 PHE161 ILE162 ASP163 MET164 THR165 ILE166 ARG167 GLY168 GLN169 ASN170 VAL171 ARG172 LEU173 TYR174 ILE175 ILE176 PRO177 GLY178 ILE179 SER180 LEU181 ASP182 THR183 ARG184 PHE185 GLU186 SER187 ARG188 THR189 ARG190 LYS191 GLU192 ILE193 SER194 LYS195 ILE196 GLU197 TRP198 HIS199 ASN200 LEU201 MET202 ASP203 LEU204 PRO205 THR206 ASN217 LYS218 PHE219 TYR220 MET221 VAL222 ILE223 PRO224 PHE225 LEU226 ALA227 PRO228 LEU229 LYS230 LYS231 TRP232 ILE233 LYS234 LYS235 ARG236 ASN237 ILE238 ALA239 ASN240 ASN241
Unit 3 SER155 ILE156 LEU157 TYR158 ALA159 GLY160 PRO161 THR162 PHE163 THR164 HIS165 SER166 PRO167 ALA168 ALA169 SER170 ASN171 LEU172 PRO173 ILE174 PRO175 THR176 PHE177 LEU178 HIS179

Ligands
Unit 4 FMT201 FMT202
Unit 5 FMT301 FMT302 FMT303 MG304

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany