5J3E - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN THYN1 PROTEIN IN COMPLEX WITH 5- METHYLCYTOSINE CONTAINING DNA
• Keywords: PROTEIN-DNA COMPLEX, MODIFIED DNA, 5-METHYLCYTOSINE CONTAINI STRUCTURAL GENOMICS CONSORTIUM, SGC, NUCLEAR PROTEIN-DNA CO
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5J3E	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THYMOCYTE NUCLEAR PROTEIN 1	A	172	1372	0
2	Protein	THYMOCYTE NUCLEAR PROTEIN 1	B	171	1356	0
3	Other macromolecule	5-METHYLCYTOSINE CONTAINING DNA	C	12	224	20
4	Other macromolecule	5-METHYLCYTOSINE CONTAINING DNA	D	12	224	20
5	Other macromolecule	5-METHYLCYTOSINE CONTAINING DNA	E	12	224	20
6	Other macromolecule	5-METHYLCYTOSINE CONTAINING DNA	F	12	224	20
7	Ligand	THYMOCYTE NUCLEAR PROTEIN 1	A	3	0	3
8	Ligand	THYMOCYTE NUCLEAR PROTEIN 1	B	5	0	5
9	Water			10	0	10
total				409	3624	98

Proteins

Unit 1

LEU 53 SER 54 SER 55 HIS 56 TRP 57 LEU 58 MET 59 LYS 60 SER 61 GLU 62 PRO 63 GLU 64 SER 65 ARG 66 LEU 67 GLU 68 LYS 69 GLY 70 VAL 71 ASP 72 VAL 73 LYS 74 PHE 75 SER 76 ILE 77 GLU 78 ASP 79 LEU 80 LYS 81 ALA 82 GLN 83 PRO 84 LYS 85 GLN 86 THR 87 THR 88 CYS 89 TRP 90 ASP 91 GLY 92 VAL 93 ARG 94 ASN 95 TYR 96 GLN 97 ALA 98 ARG 99 ASN 100 PHE 101 LEU 102 ARG 103 ALA 104 MET 105 LYS 106 LEU 107 GLY 108 GLU 109 GLU 110 ALA 111 PHE 112 PHE 113 TYR 114 HIS 115 SER 116 ASN 117 CYS 118 LYS 119 GLU 120 PRO 121 GLY 122 ILE 123 ALA 124 GLY 125 LEU 126 MET 127 LYS 128 ILE 129 VAL 130 LYS 131 GLU 132 ALA 133 TYR 134 PRO 135 ASP 136 HIS 137 THR 138 GLN 139 PHE 140 GLU 141 LYS 142 ASN 143 ASN 144 PRO 145 HIS 146 TYR 147 ASP 148 PRO 149 SER 150 SER 151 LYS 152 GLU 153 ASP 154 ASN 155 PRO 156 LYS 157 TRP 158 SER 159 MET 160 VAL 161 ASP 162 VAL 163 GLN 164 PHE 165 VAL 166 ARG 167 MET 168 MET 169 LYS 170 ARG 171 PHE 172 ILE 173 PRO 174 LEU 175 ALA 176 GLU 177 LEU 178 LYS 179 SER 180 TYR 181 HIS 182 GLN 183 ALA 184 HIS 185 LYS 186 ALA 187 THR 188 GLY 189 GLY 190 PRO 191 LEU 192 LYS 193 ASN 194 MET 195 VAL 196 LEU 197 PHE 198 THR 199 ARG 200 GLN 201 ARG 202 LEU 203 SER 204 ILE 205 GLN 206 PRO 207 LEU 208 THR 209 GLN 210 GLU 211 GLU 212 PHE 213 ASP 214 PHE 215 VAL 216 LEU 217 SER 218 LEU 219 GLU 220 GLU 221 LYS 222 GLU 223 PRO 224

Unit 2

SER 54 SER 55 HIS 56 TRP 57 LEU 58 MET 59 LYS 60 SER 61 GLU 62 PRO 63 GLU 64 SER 65 ARG 66 LEU 67 GLU 68 LYS 69 GLY 70 VAL 71 ASP 72 VAL 73 LYS 74 PHE 75 SER 76 ILE 77 GLU 78 ASP 79 LEU 80 LYS 81 ALA 82 GLN 83 PRO 84 LYS 85 GLN 86 THR 87 THR 88 CYS 89 TRP 90 ASP 91 GLY 92 VAL 93 ARG 94 ASN 95 TYR 96 GLN 97 ALA 98 ARG 99 ASN 100 PHE 101 LEU 102 ARG 103 ALA 104 MET 105 LYS 106 LEU 107 GLY 108 GLU 109 GLU 110 ALA 111 PHE 112 PHE 113 TYR 114 HIS 115 SER 116 ASN 117 CYS 118 LYS 119 GLU 120 PRO 121 GLY 122 ILE 123 ALA 124 GLY 125 LEU 126 MET 127 LYS 128 ILE 129 VAL 130 LYS 131 GLU 132 ALA 133 TYR 134 PRO 135 ASP 136 HIS 137 THR 138 GLN 139 PHE 140 GLU 141 LYS 142 ASN 143 ASN 144 PRO 145 HIS 146 TYR 147 ASP 148 PRO 149 SER 150 SER 151 LYS 152 GLU 153 ASP 154 ASN 155 PRO 156 LYS 157 TRP 158 SER 159 MET 160 VAL 161 ASP 162 VAL 163 GLN 164 PHE 165 VAL 166 ARG 167 MET 168 MET 169 LYS 170 ARG 171 PHE 172 ILE 173 PRO 174 LEU 175 ALA 176 GLU 177 LEU 178 LYS 179 SER 180 TYR 181 HIS 182 GLN 183 ALA 184 HIS 185 LYS 186 ALA 187 THR 188 GLY 189 GLY 190 PRO 191 LEU 192 LYS 193 ASN 194 MET 195 VAL 196 LEU 197 PHE 198 THR 199 ARG 200 GLN 201 ARG 202 LEU 203 SER 204 ILE 205 GLN 206 PRO 207 LEU 208 THR 209 GLN 210 GLU 211 GLU 212 PHE 213 ASP 214 PHE 215 VAL 216 LEU 217 SER 218 LEU 219 GLU 220 GLU 221 LYS 222 GLU 223 PRO 224

Other macromolecules

Unit 3	DG 1 DC 2 DC 3 DA 4 DA 5 5CM 6 DG 7 DT 8 DT 9 DG 10 DG 11 DC 12
Unit 4	DG 1 DC 2 DC 3 DA 4 DA 5 5CM 6 DG 7 DT 8 DT 9 DG 10 DG 11 DC 12
Unit 5	DG 1 DC 2 DC 3 DA 4 DA 5 5CM 6 DG 7 DT 8 DT 9 DG 10 DG 11 DC 12
Unit 6	DG 1 DC 2 DC 3 DA 4 DA 5 5CM 6 DG 7 DT 8 DT 9 DG 10 DG 11 DC 12

Ligands

Unit 7	UNX 301 UNX 302 UNX 303
Unit 8	UNX 301 UNX 302 UNX 303 UNX 304 UNX 305