5J14 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ENDOGLYCOCERAMIDASE I FROM RHODOCOC-CUS COMPLEX WITH GM3
• Keywords: COMPLEX, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5J14	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PUTATIVE SECRETED ENDOGLYCOSYLCERAMIDASE	A	450	3453	0
2	Protein	PUTATIVE SECRETED ENDOGLYCOSYLCERAMIDASE	B	434	3336	0
3	Ligand		C	3	0	43
4	Ligand		D	2	0	23
5	Ligand	PUTATIVE SECRETED ENDOGLYCOSYLCERAMIDASE	A	2	0	40
6	Ligand	PUTATIVE SECRETED ENDOGLYCOSYLCERAMIDASE	B	2	0	40
7	Water			707	0	707
total				1600	6789	853

Proteins

Unit 1

PRO 29 ALA 30 THR 31 PRO 32 ILE 33 THR 34 THR 35 LEU 36 GLN 37 ALA 38 ASP 39 GLY 40 THR 41 HIS 42 LEU 43 VAL 44 ASP 45 GLY 46 TYR 47 GLY 48 ARG 49 THR 50 VAL 51 LEU 52 LEU 53 HIS 54 GLY 55 VAL 56 ASN 57 ASN 58 VAL 59 ASP 60 LYS 61 ASP 62 ALA 63 PRO 64 TYR 65 LEU 66 PRO 67 ALA 68 GLY 69 GLU 70 THR 71 LEU 72 THR 73 PRO 74 GLN 75 ASP 76 ILE 77 ASP 78 ILE 79 LEU 80 VAL 81 ARG 82 HIS 83 GLY 84 PHE 85 ASN 86 THR 87 VAL 88 ARG 89 LEU 90 GLY 91 THR 92 SER 93 PHE 94 ASP 95 ALA 96 LEU 97 MET 98 PRO 99 GLN 100 ARG 101 GLY 102 GLN 103 ILE 104 ASP 105 GLU 106 ALA 107 TYR 108 LEU 109 ASP 110 ARG 111 LEU 112 THR 113 GLY 114 VAL 115 VAL 116 ASP 117 ALA 118 LEU 119 THR 120 ALA 121 ARG 122 GLY 123 MET 124 HIS 125 VAL 126 LEU 127 LEU 128 ASP 129 ASN 130 HIS 131 GLN 132 ASP 133 GLY 134 LEU 135 SER 136 LYS 137 ALA 138 TRP 139 GLY 140 GLY 141 ASN 142 GLY 143 PHE 144 PRO 145 GLU 146 TRP 147 ALA 148 ILE 149 GLU 150 SER 151 ARG 152 PRO 153 ARG 154 GLU 155 TRP 156 GLU 157 PRO 158 ASN 159 PRO 160 GLY 161 PHE 162 PRO 163 LEU 164 TYR 165 TYR 166 LEU 167 MET 168 PRO 169 SER 170 LEU 171 ASN 172 ALA 173 GLY 174 TRP 175 ASP 176 GLU 177 VAL 178 TRP 179 GLY 180 ASN 181 THR 182 HIS 183 GLY 184 ALA 185 LEU 186 ASP 187 HIS 188 LEU 189 GLY 190 THR 191 ALA 192 LEU 193 GLY 194 ALA 195 LEU 196 ALA 197 GLU 198 ARG 199 VAL 200 GLU 201 GLY 202 LYS 203 PRO 204 GLY 205 VAL 206 MET 207 GLY 208 ILE 209 GLU 210 LEU 211 LEU 212 ASN 213 GLU 214 PRO 215 TRP 216 PRO 217 GLY 218 SER 219 ARG 220 PHE 221 LEU 222 SER 223 CYS 224 PHE 225 PRO 226 ASN 227 GLY 228 CYS 229 PRO 230 ASP 231 PHE 232 ASP 233 ARG 234 THR 235 TYR 236 GLN 237 ALA 238 ALA 239 MET 240 GLN 241 LYS 242 LEU 243 THR 244 ASP 245 ALA 246 VAL 247 ARG 248 ALA 249 GLN 250 ASN 251 PRO 252 THR 253 ILE 254 PRO 255 VAL 256 TYR 257 TRP 258 GLU 259 PRO 260 ASN 261 VAL 262 THR 263 TRP 264 ASN 265 GLN 266 MET 267 MET 268 PRO 269 SER 270 ASN 271 LEU 272 PHE 273 ALA 274 PRO 275 PRO 276 VAL 277 THR 278 PRO 279 ALA 280 LEU 281 THR 282 THR 283 ALA 284 ASP 285 VAL 286 VAL 287 PHE 288 ALA 289 PRO 290 HIS 291 ASP 292 TYR 293 CYS 294 ILE 295 PRO 296 SER 297 GLN 298 LEU 299 ALA 300 ILE 301 TYR 302 LEU 303 GLY 304 LEU 305 PRO 306 GLN 307 ALA 308 LEU 309 ARG 310 GLY 311 LEU 312 CYS 313 VAL 314 PRO 315 GLN 316 GLN 317 ASP 318 LEU 319 THR 320 TRP 321 SER 322 ASN 323 ILE 324 ASP 325 ALA 326 ILE 327 THR 328 GLU 329 ARG 330 ALA 331 ASN 332 VAL 333 PRO 334 THR 335 VAL 336 ILE 337 THR 338 SER 339 PHE 340 GLY 341 ASP 342 GLY 343 ASP 344 PRO 345 THR 346 VAL 347 LEU 348 LYS 349 ASN 350 THR 351 LEU 352 ALA 353 ARG 354 ALA 355 ASP 356 GLU 357 ARG 358 PHE 359 ILE 360 GLY 361 TRP 362 GLN 363 TYR 364 TRP 365 HIS 366 PHE 367 GLY 368 ALA 369 GLY 370 ASN 371 ALA 372 THR 373 ASP 374 PRO 375 PHE 376 LEU 377 GLY 378 GLU 379 VAL 380 GLY 381 ARG 382 GLN 383 LEU 384 VAL 385 ARG 386 THR 387 TYR 388 PRO 389 GLN 390 ALA 391 THR 392 ALA 393 GLY 394 GLU 395 PRO 396 GLY 397 ARG 398 MET 399 ILE 400 PHE 401 ASP 402 ALA 403 ASP 404 ASN 405 GLY 406 ASP 407 PHE 408 ALA 409 TYR 410 ARG 411 PHE 412 THR 413 PRO 414 ARG 415 ALA 416 ALA 417 THR 418 ARG 419 PRO 420 THR 421 GLU 422 ILE 423 PHE 424 VAL 425 SER 426 ASP 427 LEU 428 HIS 429 TYR 430 PRO 431 ASP 432 GLY 433 TYR 434 ALA 435 VAL 436 GLN 437 VAL 438 ASP 439 GLY 440 GLY 441 GLN 442 VAL 443 THR 444 SER 445 ALA 446 PRO 447 GLY 448 ALA 449 ARG 450 ILE 451 VAL 452 THR 453 VAL 454 VAL 455 ALA 456 ASP 457 GLY 458 SER 459 GLY 460 PRO 461 VAL 462 THR 463 VAL 464 LYS 465 ILE 466 ASN 467 ARG 468 PRO 469 GLY 470 SER 471 ALA 472 GLY 473 ALA 474 GLU 475 VAL 476 PRO 477 ASP 478

Unit 2

THR 31 PRO 32 ILE 33 THR 34 THR 35 LEU 36 GLN 37 ALA 38 ASP 39 GLY 40 THR 41 HIS 42 LEU 43 VAL 44 ASP 45 GLY 46 TYR 47 GLY 48 ARG 49 THR 50 VAL 51 LEU 52 LEU 53 HIS 54 GLY 55 VAL 56 ASN 57 ASN 58 VAL 59 ASP 60 LYS 61 ASP 62 ALA 63 PRO 64 TYR 65 LEU 66 PRO 67 ALA 68 GLY 69 GLU 70 THR 71 LEU 72 THR 73 PRO 74 GLN 75 ASP 76 ILE 77 ASP 78 ILE 79 LEU 80 VAL 81 ARG 82 HIS 83 GLY 84 PHE 85 ASN 86 THR 87 VAL 88 ARG 89 LEU 90 GLY 91 THR 92 SER 93 PHE 94 ASP 95 ALA 96 LEU 97 MET 98 PRO 99 GLN 100 ARG 101 GLY 102 GLN 103 ILE 104 ASP 105 GLU 106 ALA 107 TYR 108 LEU 109 ASP 110 ARG 111 LEU 112 THR 113 GLY 114 VAL 115 VAL 116 ASP 117 ALA 118 LEU 119 THR 120 ALA 121 ARG 122 GLY 123 MET 124 HIS 125 VAL 126 LEU 127 LEU 128 ASP 129 ASN 130 HIS 131 GLN 132 ASP 133 GLY 134 LEU 135 SER 136 LYS 137 ALA 138 TRP 139 GLY 140 GLY 141 ASN 142 GLY 143 PHE 144 PRO 145 GLU 146 TRP 147 ALA 148 ILE 149 GLU 150 SER 151 ARG 152 PRO 153 ARG 154 GLU 155 TRP 156 GLU 157 PRO 158 ASN 159 PRO 160 GLY 161 PHE 162 PRO 163 LEU 164 TYR 165 TYR 166 LEU 167 MET 168 PRO 169 SER 170 LEU 171 ASN 172 ALA 173 GLY 174 TRP 175 ASP 176 GLU 177 VAL 178 TRP 179 GLY 180 ASN 181 THR 182 HIS 183 GLY 184 ALA 185 LEU 186 ASP 187 HIS 188 LEU 189 GLY 190 THR 191 ALA 192 LEU 193 GLY 194 ALA 195 LEU 196 ALA 197 GLU 198 ARG 199 VAL 200 GLU 201 GLY 202 LYS 203 PRO 204 GLY 205 VAL 206 MET 207 GLY 208 ILE 209 GLU 210 LEU 211 LEU 212 ASN 213 GLU 214 PRO 215 TRP 216 PRO 217 GLY 218 SER 219 ARG 220 PHE 221 LEU 222 SER 223 CYS 224 PHE 225 PRO 226 ASN 227 GLY 228 CYS 229 PRO 230 ASP 231 PHE 232 ASP 233 ARG 234 THR 235 TYR 236 GLN 237 ALA 238 ALA 239 MET 240 GLN 241 LYS 242 LEU 243 THR 244 ASP 245 ALA 246 VAL 247 ARG 248 ALA 249 GLN 250 ASN 251 PRO 252 THR 253 ILE 254 PRO 255 VAL 256 TYR 257 TRP 258 GLU 259 PRO 260 ASN 261 VAL 262 THR 263 TRP 264 ASN 265 GLN 266 MET 267 MET 268 PRO 269 SER 270 ASN 271 LEU 272 PHE 273 ALA 274 PRO 275 PRO 276 VAL 277 THR 278 PRO 279 ALA 280 LEU 281 THR 282 THR 283 ALA 284 ASP 285 VAL 286 VAL 287 PHE 288 ALA 289 PRO 290 HIS 291 ASP 292 TYR 293 CYS 294 ILE 295 PRO 296 SER 297 GLN 298 LEU 312 CYS 313 VAL 314 PRO 315 GLN 316 GLN 317 ASP 318 LEU 319 THR 320 TRP 321 SER 322 ASN 323 ILE 324 ASP 325 ALA 326 ILE 327 THR 328 GLU 329 ARG 330 ALA 331 ASN 332 VAL 333 PRO 334 THR 335 VAL 336 ILE 337 THR 338 SER 339 PHE 340 GLY 341 ASP 342 GLY 343 ASP 344 PRO 345 THR 346 VAL 347 LEU 348 LYS 349 ASN 350 THR 351 LEU 352 ALA 353 ARG 354 ALA 355 ASP 356 GLU 357 ARG 358 PHE 359 ILE 360 GLY 361 TRP 362 GLN 363 TYR 364 TRP 365 HIS 366 PHE 367 GLY 368 ALA 369 GLY 370 ASN 371 ALA 372 THR 373 ASP 374 PRO 375 PHE 376 LEU 377 GLY 378 GLU 379 VAL 380 GLY 381 ARG 382 GLN 383 LEU 384 VAL 385 ARG 386 THR 387 TYR 388 PRO 389 GLN 390 ALA 391 THR 392 ALA 393 GLY 394 GLU 395 PRO 396 GLY 397 ARG 398 MET 399 ILE 400 PHE 401 ASP 402 ALA 403 ASP 404 ASN 405 GLY 406 ASP 407 PHE 408 ALA 409 TYR 410 ARG 411 PHE 412 THR 413 PRO 414 ARG 415 ALA 416 ALA 417 THR 418 ARG 419 PRO 420 THR 421 GLU 422 ILE 423 PHE 424 VAL 425 SER 426 ASP 427 LEU 428 HIS 429 TYR 430 PRO 431 ASP 432 GLY 433 TYR 434 ALA 435 VAL 436 GLN 437 VAL 438 ASP 439 GLY 440 GLY 441 GLN 442 VAL 443 THR 444 SER 445 ALA 446 PRO 447 GLY 448 ALA 449 ARG 450 ILE 451 VAL 452 THR 453 VAL 454 VAL 455 ALA 456 ASP 457 GLY 458 SER 459 GLY 460 PRO 461 VAL 462 THR 463 VAL 464 LYS 465 ILE 466 ASN 467 ARG 468 PRO 469 GLY 470 SER 471 ALA 472 GLY 473 ALA 474 GLU 475 VAL 476 PRO 477

Ligands

Unit 3	BGC 1 GAL 2 SIA 3
Unit 4	BGC 1 GAL 2
Unit 5	NA 504 18C 505
Unit 6	NA 503 18C 504