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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DECAMERIC BFDV CAPSID PROTEIN
Keywords BFDV VIRUS CAPSID JELLY ROLL, VIRUS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5J09     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  A 171 2783 0
2  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  B 169 2762 0
3  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  C 169 2762 0
4  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  D 171 2789 0
5  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  E 170 2772 0
6  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  F 170 2772 0
7  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  G 170 2772 0
8  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  H 169 2762 0
9  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  I 169 2762 0
10  Protein   BEAK AND FEATHER DISEASE VIRUS CAPSID PROTEIN  J 170 2772 0
11 Water     1407 0 1407
total       3105 27708 1407
Proteins
Unit 1 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLN199 SER204 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238
Unit 2 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 3 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 4 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLN199 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 5 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 6 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 7 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 8 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 9 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
Unit 10 ARG46 ILE47 TYR48 THR49 LEU50 ARG51 LEU52 THR53 ARG54 GLN55 PHE56 GLN57 PHE58 LYS59 ILE60 ASN61 LYS62 GLN63 THR64 THR65 SER66 VAL67 GLY68 ASN69 LEU70 ILE71 PHE72 ASN73 ALA74 ASP75 TYR76 ILE77 THR78 PHE79 ALA80 LEU81 ASP82 ASP83 PHE84 LEU85 GLN86 ALA87 VAL88 PRO89 ASN90 PRO91 HIS92 THR93 LEU94 ASN95 PHE96 GLU97 ASP98 TYR99 ARG100 ILE101 LYS102 LEU103 ALA104 LYS105 MET106 GLU107 MET108 ARG109 PRO110 THR111 GLY112 GLY113 HIS114 TYR115 THR116 VAL117 GLN118 SER119 ASP120 GLY121 PHE122 GLY123 HIS124 THR125 ALA126 VAL127 ILE128 GLN129 ASP130 SER131 ARG132 ILE133 THR134 ARG135 PHE136 LYS137 THR138 THR139 ALA140 ASP141 GLN142 THR143 GLN144 ASP145 PRO146 LEU147 ALA148 PRO149 PHE150 ASP151 GLY152 ALA153 LYS154 LYS155 TRP156 PHE157 VAL158 SER159 ARG160 GLY161 PHE162 LYS163 ARG164 LEU165 LEU166 ARG167 PRO168 LYS169 PRO170 ASN189 SER190 ALA191 ARG192 THR193 GLY194 TRP195 ILE196 PRO197 LEU198 ALA205 GLY206 THR207 LYS208 VAL209 ARG210 HIS211 TYR212 GLY213 ILE214 ALA215 PHE216 SER217 PHE218 PRO219 GLN220 PRO221 GLU222 GLN223 THR224 ILE225 THR226 TYR227 VAL228 THR229 LYS230 LEU231 THR232 LEU233 TYR234 VAL235 GLN236 PHE237 ARG238 GLN239
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany